-
1
-
-
77950136923
-
National Council on Radiation Protection and Measurements report shows substantial medical exposure increase
-
D. A. Schauer, O. W. Linton, National Council on Radiation Protection and Measurements report shows substantial medical exposure increase. Radiology 253, 293 -296 (2009).
-
(2009)
Radiology
, vol.253
, pp. 293-296
-
-
Schauer, D.A.1
Linton, O.W.2
-
2
-
-
34547916043
-
-
U.S. Food and Drug Administration, Rockville, MD
-
S. H. Stern, R. V. Kaczmarek, D. C. Spelic, O. H. Suleiman, Nationwide Evaluation of X-Ray Trends (NEXT) 2000-01 Survey of Patient Radiation Exposure from Computed Tomographic (CT) Examinations in the United States (U.S. Food and Drug Administration, Rockville, MD, 2001).
-
(2001)
Nationwide Evaluation of X-Ray Trends (NEXT) 2000-01 Survey of Patient Radiation Exposure from Computed Tomographic (CT) Examinations in the United States
-
-
Stern, S.H.1
Kaczmarek, R.V.2
Spelic, D.C.3
Suleiman, O.H.4
-
3
-
-
79961037018
-
Population-based risk for complications after transthoracic needle lung biopsy of a pulmonary nodule: An analysis of discharge records
-
R. S. Wiener, L. M. Schwartz, S. Woloshin, H. G. Welch, Population-based risk for complications after transthoracic needle lung biopsy of a pulmonary nodule: An analysis of discharge records. Ann. Intern. Med. 155, 137-144 (2011).
-
(2011)
Ann. Intern. Med.
, vol.155
, pp. 137-144
-
-
Wiener, R.S.1
Schwartz, L.M.2
Woloshin, S.3
Welch, H.G.4
-
4
-
-
27144449606
-
Guidelines for management of small pulmonary nodules detected on CT scans: A statement from the Fleischner Society
-
H. MacMahon, J. H. Austin, G. Gamsu, C. J. Herold, J. R. Jett, D. P. Naidich, E. F. Patz Jr., S. J. Swensen, S. Fleischner, Guidelines for management of small pulmonary nodules detected on CT scans: A statement from the Fleischner Society. Radiology 237, 395-400 (2005).
-
(2005)
Radiology
, vol.237
, pp. 395-400
-
-
MacMahon, H.1
Austin, J.H.2
Gamsu, G.3
Herold, C.J.4
Jett, J.R.5
Naidich, D.P.6
Patz Jr., E.F.7
Swensen, S.J.8
Fleischner, S.9
-
5
-
-
79952415252
-
Emerging molecular biomarkers -Blood-based strategies to detect and monitor cancer
-
S. M. Hanash, C. S. Baik, O. Kallioniemi, Emerging molecular biomarkers -Blood-based strategies to detect and monitor cancer. Nat. Rev. Clin. Oncol. 8, 142-150 (2011).
-
(2011)
Nat. Rev. Clin. Oncol.
, vol.8
, pp. 142-150
-
-
Hanash, S.M.1
Baik, C.S.2
Kallioniemi, O.3
-
6
-
-
55549116366
-
Minimizing unintended consequences of detecting lung nodules by computed tomography
-
Y. E. Miller, Minimizing unintended consequences of detecting lung nodules by computed tomography. Am. J. Respir. Crit. Care Med. 178, 891-892 (2008).
-
(2008)
Am. J. Respir. Crit. Care Med.
, vol.178
, pp. 891-892
-
-
Miller, Y.E.1
-
7
-
-
78449291165
-
Utility of Oncotype DX risk estimates in clinically intermediate risk hormone receptor-positive, HER2-normal, grade II, lymph node-negative breast cancers
-
C. M. Kelly, S. Krishnamurthy, G. Bianchini, J. K. Litton, A. M. Gonzalez-Angulo, G. N. Hortobagyi, L. Pusztai, Utility of Oncotype DX risk estimates in clinically intermediate risk hormone receptor-positive, HER2-normal, grade II, lymph node-negative breast cancers. Cancer 116, 5161-5167 (2010).
-
(2010)
Cancer
, vol.116
, pp. 5161-5167
-
-
Kelly, C.M.1
Krishnamurthy, S.2
Bianchini, G.3
Litton, J.K.4
Gonzalez-Angulo, A.M.5
Hortobagyi, G.N.6
Pusztai, L.7
-
8
-
-
84861618843
-
-
National Academies Press, Washington, DC
-
C. Micheel, S. J. Nass, G. S. Omenn, Evolution of Translational Omics: Lessons Learned and the Path Forward (National Academies Press, Washington, DC, 2012).
-
(2012)
Evolution of Translational Omics: Lessons Learned and the Path Forward
-
-
Micheel, C.1
Nass, S.J.2
Omenn, G.S.3
-
9
-
-
84862849740
-
Added value of a serum proteomic signature in the diagnostic evaluation of lung nodules
-
C. V. Pecot, M. Li, X. J. Zhang, R. Rajanbabu, C. Calitri, A. Bungum, J. R. Jett, J. B. Putnam, C. Callaway-Lane, S. Deppen, E. L. Grogan, D. P. Carbone, J. A. Worrell, K. G. Moons, Y. Shyr, P. P. Massion, Added value of a serum proteomic signature in the diagnostic evaluation of lung nodules. Cancer Epidemiol. Biomarkers Prev. 21, 786-792 (2012).
-
(2012)
Cancer Epidemiol. Biomarkers Prev.
, vol.21
, pp. 786-792
-
-
Pecot, C.V.1
Li, M.2
Zhang, X.J.3
Rajanbabu, R.4
Calitri, C.5
Bungum, A.6
Jett, J.R.7
Putnam, J.B.8
Callaway-Lane, C.9
Deppen, S.10
Grogan, E.L.11
Carbone, D.P.12
Worrell, J.A.13
Moons, K.G.14
Shyr, Y.15
Massion, P.P.16
-
10
-
-
78650121234
-
Unlocking biomarker discovery: Large scale application of aptamer proteomic technology for early detection of lung cancer
-
R. M. Ostroff, W. L. Bigbee, W. Franklin, L. Gold, M. Mehan, Y. E. Miller, H. I. Pass, W. N. Rom, J. M. Siegfried, A. Stewart, J. J. Walker, J. L. Weissfeld, S. Williams, D. Zichi, E. N. Brody, Unlocking biomarker discovery: Large scale application of aptamer proteomic technology for early detection of lung cancer. PLoS One 5, e15003 (2010).
-
(2010)
PLoS One
, vol.5
-
-
Ostroff, R.M.1
Bigbee, W.L.2
Franklin, W.3
Gold, L.4
Mehan, M.5
Miller, Y.E.6
Pass, H.I.7
Rom, W.N.8
Siegfried, J.M.9
Stewart, A.10
Walker, J.J.11
Weissfeld, J.L.12
Williams, S.13
Zichi, D.14
Brody, E.N.15
-
11
-
-
84858766991
-
A multiplexed serum biomarker immunoassay panel discriminates clinical lung cancer patients from high-risk individuals found to be cancer-free by CT screening
-
W. L. Bigbee, V. Gopalakrishnan, J. L. Weissfeld, D. O. Wilson, S. Dacic, A. E. Lokshin, J. M. Siegfried, A multiplexed serum biomarker immunoassay panel discriminates clinical lung cancer patients from high-risk individuals found to be cancer-free by CT screening. J. Thorac. Oncol. 7, 698-708 (2012).
-
(2012)
J. Thorac. Oncol.
, vol.7
, pp. 698-708
-
-
Bigbee, W.L.1
Gopalakrishnan, V.2
Weissfeld, J.L.3
Wilson, D.O.4
Dacic, S.5
Lokshin, A.E.6
Siegfried, J.M.7
-
12
-
-
77952646004
-
Identification of an autoantibody panel to separate lung cancer from smokers and nonsmokers
-
W. N. Rom, J. D. Goldberg, D. Addrizzo-Harris, H. N. Watson, M. Khilkin, A. K. Greenberg, D. P. Naidich, B. Crawford, E. Eylers, D. Liu, E. M. Tan, Identification of an autoantibody panel to separate lung cancer from smokers and nonsmokers. BMC Cancer 10, 234 (2010).
-
(2010)
BMC Cancer
, vol.10
, pp. 234
-
-
Rom, W.N.1
Goldberg, J.D.2
Addrizzo-Harris, D.3
Watson, H.N.4
Khilkin, M.5
Greenberg, A.K.6
Naidich, D.P.7
Crawford, B.8
Eylers, E.9
Liu, D.10
Tan, E.M.11
-
13
-
-
79960076353
-
EarlyCDT-Lung: An immunobiomarker test as an aid to early detection of lung cancer
-
S. Lam, P. Boyle, G. F. Healey, P. Maddison, L. Peek, A. Murray, C. J. Chapman, J. Allen, W. C. Wood, H. F. Sewell, J. F. Robertson, EarlyCDT-Lung: An immunobiomarker test as an aid to early detection of lung cancer. Cancer Prev. Res. 4, 1126-1134 (2011).
-
(2011)
Cancer Prev. Res.
, vol.4
, pp. 1126-1134
-
-
Lam, S.1
Boyle, P.2
Healey, G.F.3
Maddison, P.4
Peek, L.5
Murray, A.6
Chapman, C.J.7
Allen, J.8
Wood, W.C.9
Sewell, H.F.10
Robertson, J.F.11
-
14
-
-
84868142905
-
EarlyCDT® -Lung test: Improved clinical utility through additional autoantibody assays
-
C. J. Chapman, G. F. Healey, A. Murray, P. Boyle, C. Robertson, L. J. Peek, J. Allen, A. J. Thorpe, G. Hamilton-Fairley, C. B. Parsy-Kowalska, I. K. MacDonald, W. Jewell, P. Maddison, J. F. Robertson, EarlyCDT® -Lung test: Improved clinical utility through additional autoantibody assays. Tumour Biol. 33, 1319-1326 (2012).
-
(2012)
Tumour Biol.
, vol.33
, pp. 1319-1326
-
-
Chapman, C.J.1
Healey, G.F.2
Murray, A.3
Boyle, P.4
Robertson, C.5
Peek, L.J.6
Allen, J.7
Thorpe, A.J.8
Hamilton-Fairley, G.9
Parsy-Kowalska, C.B.10
MacDonald, I.K.11
Jewell, W.12
Maddison, P.13
Robertson, J.F.14
-
15
-
-
34848815681
-
Diagnostic accuracy of MALDI mass spectrometric analysis of unfractionated serum in lung cancer
-
P. B. Yildiz, Y. Shyr, J. S. Rahman, N. R. Wardwell, L. J. Zimmerman, B. Shakhtour, W. H. Gray, S. Chen, M. Li, H. Roder, D. C. Liebler, W. L. Bigbee, J. M. Siegfried, J. L. Weissfeld, A. L. Gonzalez, M. Ninan, D. H. Johnson, D. P. Carbone, R. M. Caprioli, P. P. Massion, Diagnostic accuracy of MALDI mass spectrometric analysis of unfractionated serum in lung cancer. J. Thorac. Oncol. 2, 893-901 (2007).
-
(2007)
J. Thorac. Oncol.
, vol.2
, pp. 893-901
-
-
Yildiz, P.B.1
Shyr, Y.2
Rahman, J.S.3
Wardwell, N.R.4
Zimmerman, L.J.5
Shakhtour, B.6
Gray, W.H.7
Chen, S.8
Li, M.9
Roder, H.10
Liebler, D.C.11
Bigbee, W.L.12
Siegfried, J.M.13
Weissfeld, J.L.14
Gonzalez, A.L.15
Ninan, M.16
Johnson, D.H.17
Carbone, D.P.18
Caprioli, R.M.19
Massion, P.P.20
more..
-
16
-
-
67650564834
-
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma
-
T. A. Addona, S. E. Abbatiello, B. Schilling, S. J. Skates, D. R. Mani, D. M. Bunk, C. H. Spiegelman, L. J. Zimmerman, A. J. Ham, H. Keshishian, S. C. Hall, S. Allen, R. K. Blackman, C. H. Borchers, C. Buck, H. L. Cardasis, M. P. Cusack, N. G. Dodder, B. W. Gibson, J. M. Held, T. Hiltke, A. Jackson, E. B. Johansen, C. R. Kinsinger, J. Li, M. Mesri, T. A. Neubert, R. K. Niles, T. C. Pulsipher, D. Ransohoff, H. Rodriguez, P. A. Rudnick, D. Smith, D. L. Tabb, T. J. Tegeler, A. M. Variyath, L. J. Vega-Montoto, A. Wahlander, S. Waldemarson, M. Wang, J. R. Whiteaker, L. Zhao, N. L. Anderson, S. J. Fisher, D. C. Liebler, A. G. Paulovich, F. E. Regnier, P. Tempst, S. A. Carr, Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nat. Biotechnol. 27, 633-641 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 633-641
-
-
Addona, T.A.1
Abbatiello, S.E.2
Schilling, B.3
Skates, S.J.4
Mani, D.R.5
Bunk, D.M.6
Spiegelman, C.H.7
Zimmerman, L.J.8
Ham, A.J.9
Keshishian, H.10
Hall, S.C.11
Allen, S.12
Blackman, R.K.13
Borchers, C.H.14
Buck, C.15
Cardasis, H.L.16
Cusack, M.P.17
Dodder, N.G.18
Gibson, B.W.19
Held, J.M.20
Hiltke, T.21
Jackson, A.22
Johansen, E.B.23
Kinsinger, C.R.24
Li, J.25
Mesri, M.26
Neubert, T.A.27
Niles, R.K.28
Pulsipher, T.C.29
Ransohoff, D.30
Rodriguez, H.31
Rudnick, P.A.32
Smith, D.33
Tabb, D.L.34
Tegeler, T.J.35
Variyath, A.M.36
Vega-Montoto, L.J.37
Wahlander, A.38
Waldemarson, S.39
Wang, M.40
Whiteaker, J.R.41
Zhao, L.42
Anderson, N.L.43
Fisher, S.J.44
Liebler, D.C.45
Paulovich, A.G.46
Regnier, F.E.47
Tempst, P.48
Carr, S.A.49
more..
-
17
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: A tutorial
-
V. Lange, P. Picotti, B. Domon, R. Aebersold, Selected reaction monitoring for quantitative proteomics: A tutorial. Mol. Syst. Biol. 4, 222 (2008).
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
18
-
-
79952751238
-
Cancer genetics-guided discovery of serum biomarker signatures for diagnosis and prognosis of prostate cancer
-
I. Cima, R. Schiess, P. Wild, M. Kaelin, P. Schüffler, V. Lange, P. Picotti, R. Ossola, A. Templeton, O. Schubert, T. Fuchs, T. Leippold, S. Wyler, J. Zehetner, W. Jochum, J. Buhmann, T. Cerny, H. Moch, S. Gillessen, R. Aebersold, W. Krek, Cancer genetics-guided discovery of serum biomarker signatures for diagnosis and prognosis of prostate cancer. Proc. Natl. Acad. Sci. U.S.A. 108, 3342-3347 (2011).
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 3342-3347
-
-
Cima, I.1
Schiess, R.2
Wild, P.3
Kaelin, M.4
Schüffler, P.5
Lange, V.6
Picotti, P.7
Ossola, R.8
Templeton, A.9
Schubert, O.10
Fuchs, T.11
Leippold, T.12
Wyler, S.13
Zehetner, J.14
Jochum, W.15
Buhmann, J.16
Cerny, T.17
Moch, H.18
Gillessen, S.19
Aebersold, R.20
Krek, W.21
more..
-
19
-
-
84860851594
-
SRM targeted proteomics in search for biomarkers of HCV-induced progression of fibrosis to cirrhosis in HALT-C patients
-
S. Qin, Y. Zhou, A. S. Lok, A. Tsodikov, X. Yan, L. Gray, M. Yuan, R. L. Moritz, D. Galas, G. S. Omenn, L. Hood, SRM targeted proteomics in search for biomarkers of HCV-induced progression of fibrosis to cirrhosis in HALT-C patients. Proteomics 12, 1244-1252 (2012).
-
(2012)
Proteomics
, vol.12
, pp. 1244-1252
-
-
Qin, S.1
Zhou, Y.2
Lok, A.S.3
Tsodikov, A.4
Yan, X.5
Gray, L.6
Yuan, M.7
Moritz, R.L.8
Galas, D.9
Omenn, G.S.10
Hood, L.11
-
20
-
-
78649861704
-
Lung cancer serum biomarker discovery using glycoprotein capture and liquid chromatography mass spectrometry
-
X. Zeng, B. L. Hood, M. Sun, T. P. Conrads, R. S. Day, J. L. Weissfeld, J. M. Siegfried, W. L. Bigbee, Lung cancer serum biomarker discovery using glycoprotein capture and liquid chromatography mass spectrometry. J. Proteome Res. 9, 6440-6449 (2010).
-
(2010)
J. Proteome Res.
, vol.9
, pp. 6440-6449
-
-
Zeng, X.1
Hood, B.L.2
Sun, M.3
Conrads, T.P.4
Day, R.S.5
Weissfeld, J.L.6
Siegfried, J.M.7
Bigbee, W.L.8
-
21
-
-
79960269601
-
A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease
-
T. A. Addona, X. Shi, H. Keshishian, D. R. Mani, M. Burgess, M. A. Gillette, K. R. Clauser, D. Shen, G. D. Lewis, L. A. Farrell, M. A. Fifer, M. S. Sabatine, R. E. Gerszten, S. A. Carr, A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease. Nat. Biotechnol. 29, 635-643 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 635-643
-
-
Addona, T.A.1
Shi, X.2
Keshishian, H.3
Mani, D.R.4
Burgess, M.5
Gillette, M.A.6
Clauser, K.R.7
Shen, D.8
Lewis, G.D.9
Farrell, L.A.10
Fifer, M.A.11
Sabatine, M.S.12
Gerszten, R.E.13
Carr, S.A.14
-
22
-
-
79960214321
-
A targeted proteomics - based pipeline for verification of biomarkers in plasma
-
J. R. Whiteaker, C. Lin, J. Kennedy, L. Hou, M. Trute, I. Sokal, P. Yan, R. M. Schoenherr, L. Zhao, U. J. Voytovich, K. S. Kelly-Spratt, A. Krasnoselsky, P. R. Gafken, J. M. Hogan, L. A. Jones, P. Wang, L. Amon, L. A. Chodosh, P. S. Nelson, M. W. McIntosh, C. J. Kemp, A. G. Paulovich, A targeted proteomics - based pipeline for verification of biomarkers in plasma. Nat. Biotechnol. 29, 625- 634 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 625-634
-
-
Whiteaker, J.R.1
Lin, C.2
Kennedy, J.3
Hou, L.4
Trute, M.5
Sokal, I.6
Yan, P.7
Schoenherr, R.M.8
Zhao, L.9
Voytovich, U.J.10
Kelly-Spratt, K.S.11
Krasnoselsky, A.12
Gafken, P.R.13
Hogan, J.M.14
Jones, L.A.15
Wang, P.16
Amon, L.17
Chodosh, L.A.18
Nelson, P.S.19
McIntosh, M.W.20
Kemp, C.J.21
Paulovich, A.G.22
more..
-
23
-
-
84866178457
-
Workshop Participants, New and improved proteomics technologies for understanding complex biological systems: Addressing a grand challenge in the life sciences
-
L. E. Hood, G. S. Omenn, R. L. Moritz, R. Aebersold, K. R. Yamamoto, M. Amos, J. Hunter-Cevera, L. Locascio;Workshop Participants, New and improved proteomics technologies for understanding complex biological systems: Addressing a grand challenge in the life sciences. Proteomics 12, 2773-2783 (2012).
-
(2012)
Proteomics
, vol.12
, pp. 2773-2783
-
-
Hood, L.E.1
Omenn, G.S.2
Moritz, R.L.3
Aebersold, R.4
Yamamoto, K.R.5
Amos, M.6
Hunter-Cevera, J.7
Locascio, L.8
-
24
-
-
0242391970
-
Organelle proteomics: Looking at less to see more
-
S. Brunet, P. Thibault, E. Gagnon, P. Kearney, J. J. Bergeron, M. Desjardins, Organelle proteomics: Looking at less to see more. Trends Cell Biol. 13, 629-638 (2003).
-
(2003)
Trends Cell Biol.
, vol.13
, pp. 629-638
-
-
Brunet, S.1
Thibault, P.2
Gagnon, E.3
Kearney, P.4
Bergeron, J.J.5
Desjardins, M.6
-
25
-
-
27744468403
-
Proteomics of organelles and large cellular structures
-
J. R. Yates III, A. Gilchrist, K. E. Howell, J. J. Bergeron, Proteomics of organelles and large cellular structures. Nat. Rev. Mol. Cell Biol. 6, 702-714 (2005).
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 702-714
-
-
Yates III, J.R.1
Gilchrist, A.2
Howell, K.E.3
Bergeron, J.J.4
-
26
-
-
84863923380
-
Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics
-
R. Hüttenhain, M. Soste, N. Selevsek, H. Röst, A. Sethi, C. Carapito, T. Farrah, E. W. Deutsch, U. Kusebauch, R. L. Moritz, E. Niméus-Malmström, O. Rinner, R. Aebersold, Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics. Sci. Transl. Med. 4, 142ra94 (2012).
-
(2012)
Sci. Transl. Med.
, vol.4
-
-
Hüttenhain, R.1
Soste, M.2
Selevsek, N.3
Röst, H.4
Sethi, A.5
Carapito, C.6
Farrah, T.7
Deutsch, E.W.8
Kusebauch, U.9
Moritz, R.L.10
Niméus-Malmström, E.11
Rinner, O.12
Aebersold, R.13
-
28
-
-
84877961632
-
Results of initial low-dose computed tomographic screening for lung cancer
-
National Lung Screening Trial Research
-
National Lung Screening Trial Research; T. R. Church, W. C. Black, D. R. Aberle, C. D. Berg, K. L. Clingan, F. Duan, R. M. Fagerstrom, I. F. Gareen, D. S. Gierada, G. C. Jones, I. Mahon, P. M. Marcus, J. D. Sicks, A. Jain, S. Baum, Results of initial low-dose computed tomographic screening for lung cancer. N. Engl. J. Med. 368, 1980-1991 (2013).
-
(2013)
N. Engl. J. Med.
, vol.368
, pp. 1980-1991
-
-
Church, T.R.1
Black, W.C.2
Aberle, D.R.3
Berg, C.D.4
Clingan, K.L.5
Duan, F.6
Fagerstrom, R.M.7
Gareen, I.F.8
Gierada, D.S.9
Jones, G.C.10
Mahon, I.11
Marcus, P.M.12
Sicks, J.D.13
Jain, A.14
Baum, S.15
-
29
-
-
0031403024
-
The probability of malignancy in solitary pulmonary nodules. Application to small radiologically indeterminate nodules
-
S. J. Swensen, M. D. Silverstein, D. M. Ilstrup, C. D. Schleck, E. S. Edell, The probability of malignancy in solitary pulmonary nodules. Application to small radiologically indeterminate nodules. Arch. Intern. Med. 157, 849 -855 (1997).
-
(1997)
Arch. Intern. Med.
, vol.157
, pp. 849-855
-
-
Swensen, S.J.1
Silverstein, M.D.2
Ilstrup, D.M.3
Schleck, C.D.4
Edell, E.S.5
-
30
-
-
33847167612
-
A clinical model to estimate the pretest probability of lung cancer in patients with solitary pulmonary nodules
-
Veterans Affairs SNAP Cooperative Study Group
-
M. K. Gould, L. Ananth, P. G. Barnett; Veterans Affairs SNAP Cooperative Study Group, A clinical model to estimate the pretest probability of lung cancer in patients with solitary pulmonary nodules. Chest 131, 383-388 (2007).
-
(2007)
Chest
, vol.131
, pp. 383-388
-
-
Gould, M.K.1
Ananth, L.2
Barnett, P.G.3
-
31
-
-
0002322469
-
On a test of whether one of two random variables is stochastically larger than the other
-
H. B. Mann, D. R. Whitney, On a test of whether one of two random variables is stochastically larger than the other. Ann. Math. Stat. 18, 50-60 (1947).
-
(1947)
Ann. Math. Stat.
, vol.18
, pp. 50-60
-
-
Mann, H.B.1
Whitney, D.R.2
-
32
-
-
84875465170
-
Identification of multiple novel protein biomarkers shed by human serous ovarian tumors into the blood of immunocompromised mice and verified in patient sera
-
L. A. Beer, H. Wang, H. Y. Tang, Z. Cao, T. Chang-Wong, J. L. Tanyi, R. Zhang, Q. Liu, D. W. Speicher, Identification of multiple novel protein biomarkers shed by human serous ovarian tumors into the blood of immunocompromised mice and verified in patient sera. PLoS One 8, e60129 (2013).
-
(2013)
PLoS One
, vol.8
-
-
Beer, L.A.1
Wang, H.2
Tang, H.Y.3
Cao, Z.4
Chang-Wong, T.5
Tanyi, J.L.6
Zhang, R.7
Liu, Q.8
Speicher, D.W.9
-
33
-
-
74049131716
-
High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
-
P. Picotti, O. Rinner, R. Stallmach, F. Dautel, T. Farrah, B. Domon, H. Wenschuh, R. Aebersold, High-throughput generation of selected reaction-monitoring assays for proteins and proteomes. Nat. Methods 7, 43-46 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 43-46
-
-
Picotti, P.1
Rinner, O.2
Stallmach, R.3
Dautel, F.4
Farrah, T.5
Domon, B.6
Wenschuh, H.7
Aebersold, R.8
-
34
-
-
0003684449
-
-
Springer, New York
-
T. Hastie, R. Tibshirani, J. Friedman, The Elements of Statistical Learning: Data Mining, Inference, and Prediction (Springer, New York, 2009).
-
(2009)
The Elements of Statistical Learning: Data Mining, Inference, and Prediction
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
-
35
-
-
84977601395
-
-
John Wiley & Sons, Hoboken, ed. 3
-
D. W. Hosmer, S. Lemeshow, R. X. Sturdivant, Applied Logistic Regression (John Wiley & Sons, Hoboken, ed. 3, 2013).
-
(2013)
Applied Logistic Regression
-
-
Hosmer, D.W.1
Lemeshow, S.2
Sturdivant, R.X.3
-
37
-
-
0024370623
-
Analyzing a portion of the ROC curve
-
D. K. McClish, Analyzing a portion of the ROC curve. Med. Decis. Making 9, 190 -195 (1989).
-
(1989)
Med. Decis. Making
, vol.9
, pp. 190-195
-
-
McClish, D.K.1
-
38
-
-
79954587683
-
Stromal LRP1 in lung adenocarcinoma predicts clinical outcome
-
H. Meng, G. Chen, X. Zhang, Z. Wang, D. G. Thomas, T. J. Giordano, D. G. Beer, M. M. Wang, Stromal LRP1 in lung adenocarcinoma predicts clinical outcome. Clin. Cancer Res. 17, 2426-2433 (2011).
-
(2011)
Clin. Cancer Res.
, vol.17
, pp. 2426-2433
-
-
Meng, H.1
Chen, G.2
Zhang, X.3
Wang, Z.4
Thomas, D.G.5
Giordano, T.J.6
Beer, D.G.7
Wang, M.M.8
-
39
-
-
77951013233
-
Changes of circulating transforming growth factor-b1 level during radiation therapy are correlated with the prognosis of locally advanced non-small cell lung cancer
-
L. Zhao, W. Ji, L. Zhang, G. Ou, Q. Feng, Z. Zhou, M. Lei, W. Yang, L. Wang, Changes of circulating transforming growth factor-b1 level during radiation therapy are correlated with the prognosis of locally advanced non-small cell lung cancer. J. Thorac. Oncol. 5, 521-525 (2010).
-
(2010)
J. Thorac. Oncol.
, vol.5
, pp. 521-525
-
-
Zhao, L.1
Ji, W.2
Zhang, L.3
Ou, G.4
Feng, Q.5
Zhou, Z.6
Lei, M.7
Yang, W.8
Wang, L.9
-
40
-
-
4143055900
-
Overexpression of collagen XVIII is associated with poor outcome and elevated levels of circulating serum endostatin in non-small cell lung cancer
-
T. Iizasa, H. Chang, M. Suzuki, M. Otsuji, S. Yokoi, M. Chiyo, S. Motohashi, K. Yasufuku, Y. Sekine, A. Iyoda, K. Shibuya, K. Hiroshima, T. Fujisawa, Overexpression of collagen XVIII is associated with poor outcome and elevated levels of circulating serum endostatin in non-small cell lung cancer. Clin. Cancer Res. 10, 5361-5366 (2004).
-
(2004)
Clin. Cancer Res.
, vol.10
, pp. 5361-5366
-
-
Iizasa, T.1
Chang, H.2
Suzuki, M.3
Otsuji, M.4
Yokoi, S.5
Chiyo, M.6
Motohashi, S.7
Yasufuku, K.8
Sekine, Y.9
Iyoda, A.10
Shibuya, K.11
Hiroshima, K.12
Fujisawa, T.13
-
41
-
-
33745994676
-
Plasma proteomics of lung cancer by a linkage of multi-dimensional liquid chromatography and two-dimensional difference gel electrophoresis
-
T. Okano, T. Kondo, T. Kakisaka, K. Fujii,M. Yamada, H. Kato, T. Nishimura, A. Gemma, S. Kudoh, S. Hirohashi, Plasma proteomics of lung cancer by a linkage of multi-dimensional liquid chromatography and two-dimensional difference gel electrophoresis. Proteomics 6, 3938-3948 (2006).
-
(2006)
Proteomics
, vol.6
, pp. 3938-3948
-
-
Okano, T.1
Kondo, T.2
Kakisaka, T.3
Fujii, K.4
Yamada, M.5
Kato, H.6
Nishimura, T.7
Gemma, A.8
Kudoh, S.9
Hirohashi, S.10
-
42
-
-
66649105474
-
Tumoral expression of TXR1 and TSP1 predicts overall survival of patients with lung adenocarcinoma treated with first-line docetaxel-gemcitabine regimen
-
C. Papadaki,D. Mavroudis, M. Trypaki, A. Koutsopoulos, E. Stathopoulos, D. Hatzidaki, E. Tsakalaki, V. Georgoulias, J. Souglakos, Tumoral expression of TXR1 and TSP1 predicts overall survival of patients with lung adenocarcinoma treated with first-line docetaxel-gemcitabine regimen. Clin. Cancer Res. 15, 3827-3833 (2009).
-
(2009)
Clin. Cancer Res.
, vol.15
, pp. 3827-3833
-
-
Papadaki, C.1
Mavroudis, D.2
Trypaki, M.3
Koutsopoulos, A.4
Stathopoulos, E.5
Hatzidaki, D.6
Tsakalaki, E.7
Georgoulias, V.8
Souglakos, J.9
-
43
-
-
79957975024
-
Malignant pleural effusion cells show aberrant glucose metabolism gene expression
-
C. C. Lin, L. C. Chen, V. S. Tseng, J. J. Yan, W. W. Lai, W. P. Su, C. H. Lin, C. Y. Huang, W. C. Su, Malignant pleural effusion cells show aberrant glucose metabolism gene expression. Eur. Respir. J. 37, 1453-1465 (2011).
-
(2011)
Eur. Respir. J.
, vol.37
, pp. 1453-1465
-
-
Lin, C.C.1
Chen, L.C.2
Tseng, V.S.3
Yan, J.J.4
Lai, W.W.5
Su, W.P.6
Lin, C.H.7
Huang, C.Y.8
Su, W.C.9
-
44
-
-
84857064890
-
Progression of apoptic signaling from mesenteric ischemia-reperfusion injury to lungs: Correlation in the level of ER chaperones expression
-
P. Urban, M. Bilecova-Rabajdova, M. Marekova, J. Vesela, Progression of apoptic signaling from mesenteric ischemia-reperfusion injury to lungs: Correlation in the level of ER chaperones expression. Mol. Cell. Biochem. 362, 133-140 (2012).
-
(2012)
Mol. Cell. Biochem.
, vol.362
, pp. 133-140
-
-
Urban, P.1
Bilecova-Rabajdova, M.2
Marekova, M.3
Vesela, J.4
-
45
-
-
84866761739
-
Biomarkers in the lung cancer diagnosis: A clinical perspective
-
X. Li, T. Asmitananda, L. Gao, D. Gai, Z. Song, Y. Zhang, H. Ren, T. Yang, T. Chen, M. Chen, Biomarkers in the lung cancer diagnosis: A clinical perspective. Neoplasma 59, 500-507 (2012).
-
(2012)
Neoplasma
, vol.59
, pp. 500-507
-
-
Li, X.1
Asmitananda, T.2
Gao, L.3
Gai, D.4
Song, Z.5
Zhang, Y.6
Ren, H.7
Yang, T.8
Chen, T.9
Chen, M.10
-
46
-
-
0036569698
-
Expression of 90K (Mac-2 BP) correlates with distant metastasis and predicts survival in stage I non-small cell lung cancer patients
-
A.Marchetti, N. Tinari, F. Buttitta, A. Chella, C. A. Angeletti, R. Sacco, F. Mucilli, A. Ullrich, S. Iacobelli, Expression of 90K (Mac-2 BP) correlates with distant metastasis and predicts survival in stage I non-small cell lung cancer patients. Cancer Res. 62, 2535-2539 (2002).
-
(2002)
Cancer Res.
, vol.62
, pp. 2535-2539
-
-
Marchetti, A.1
Tinari, N.2
Buttitta, F.3
Chella, A.4
Angeletti, C.A.5
Sacco, R.6
Mucilli, F.7
Ullrich, A.8
Iacobelli, S.9
-
47
-
-
84881071578
-
Proteomic analysis of non-small cell lung cancer tissue interstitial fluids
-
S. Li, R. Wang, M. Zhang, L. Wang, S. Cheng, Proteomic analysis of non-small cell lung cancer tissue interstitial fluids. World J. Surg. Oncol. 11, 173 (2013).
-
(2013)
World J. Surg. Oncol.
, vol.11
, pp. 173
-
-
Li, S.1
Wang, R.2
Zhang, M.3
Wang, L.4
Cheng, S.5
-
48
-
-
33744830039
-
Plasma fibrinogen and serum C-reactive protein are associated with non-small cell lung cancer
-
J. M. Jones, N. C. McGonigle, M. McAnespie, G. W. Cran, A. N. Graham, Plasma fibrinogen and serum C-reactive protein are associated with non-small cell lung cancer. Lung Cancer 53, 97-101 (2006).
-
(2006)
Lung Cancer
, vol.53
, pp. 97-101
-
-
Jones, J.M.1
McGonigle, N.C.2
McAnespie, M.3
Cran, G.W.4
Graham, A.N.5
-
49
-
-
84964203940
-
Bootstrap methods for standard errors, confidence intervals, and other measures of statistical accuracy
-
B. Efron, R. Tibshirani, Bootstrap methods for standard errors, confidence intervals, and other measures of statistical accuracy. Statist. Sci. 1, 54-75 (1986).
-
(1986)
Statist. Sci.
, vol.1
, pp. 54-75
-
-
Efron, B.1
Tibshirani, R.2
-
50
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
D. N. Perkins, D. J. Pappin, D. M. Creasy, J. S. Cottrell, Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 3551-3567 (1999).
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
51
-
-
14344250874
-
Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry
-
D. Radulovic, S. Jelveh, S. Ryu, T. G. Hamilton, E. Foss, Y. Mao, A. Emili, Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry. Mol. Cell. Proteomics 3, 984-997 (2004).
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 984-997
-
-
Radulovic, D.1
Jelveh, S.2
Ryu, S.3
Hamilton, T.G.4
Foss, E.5
Mao, Y.6
Emili, A.7
-
52
-
-
26844492976
-
A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry
-
X. J. Li, E. C. Yi, C. J. Kemp, H. Zhang, R. Aebersold, A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry. Mol. Cell. Proteomics 4, 1328-1340 (2005).
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1328-1340
-
-
Li, X.J.1
Yi, E.C.2
Kemp, C.J.3
Zhang, H.4
Aebersold, R.5
-
53
-
-
62149110095
-
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
-
M. Y. Brusniak, B. Bodenmiller, D. Campbell, K. Cooke, J. Eddes, A. Garbutt, H. Lau, S. Letarte, L. N. Mueller, V. Sharma, O. Vitek, N. Zhang, R. Aebersold, J. D. Watts, Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics. BMC Bioinformatics 9, 542 (2008).
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 542
-
-
Brusniak, M.Y.1
Bodenmiller, B.2
Campbell, D.3
Cooke, K.4
Eddes, J.5
Garbutt, A.6
Lau, H.7
Letarte, S.8
Mueller, L.N.9
Sharma, V.10
Vitek, O.11
Zhang, N.12
Aebersold, R.13
Watts, J.D.14
-
54
-
-
23944492134
-
Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database
-
G. S. Omenn, D. J. States, M. Adamski, T. W. Blackwell, R. Menon, H. Hermjakob, R. Apweiler, B. B. Haab, R. J. Simpson, J. S. Eddes, E. A. Kapp, R. L. Moritz, D. W. Chan, A. J. Rai, A. Admon, R. Aebersold, J. Eng, W. S. Hancock, S. A. Hefta, H. Meyer, Y. K. Paik, J. S. Yoo, P. Ping, J. Pounds, J. Adkins, X. Qian, R. Wang, V. Wasinger, C. Y. Wu, X. Zhao, R. Zeng, A. Archakov, A. Tsugita, I. Beer, A. Pandey, M. Pisano, P. Andrews, H. Tammen, D. W. Speicher, S. M. Hanash, Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics 5, 3226-3245 (2005).
-
(2005)
Proteomics
, vol.5
, pp. 3226-3245
-
-
Omenn, G.S.1
States, D.J.2
Adamski, M.3
Blackwell, T.W.4
Menon, R.5
Hermjakob, H.6
Apweiler, R.7
Haab, B.B.8
Simpson, R.J.9
Eddes, J.S.10
Kapp, E.A.11
Moritz, R.L.12
Chan, D.W.13
Rai, A.J.14
Admon, A.15
Aebersold, R.16
Eng, J.17
Hancock, W.S.18
Hefta, S.A.19
Meyer, H.20
Paik, Y.K.21
Yoo, J.S.22
Ping, P.23
Pounds, J.24
Adkins, J.25
Qian, X.26
Wang, R.27
Wasinger, V.28
Wu, C.Y.29
Zhao, X.30
Zeng, R.31
Archakov, A.32
Tsugita, A.33
Beer, I.34
Pandey, A.35
Pisano, M.36
Andrews, P.37
Tammen, H.38
Speicher, D.W.39
Hanash, S.M.40
more..
-
55
-
-
33644864034
-
Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study
-
D. J. States, G. S. Omenn, T. W. Blackwell, D. Fermin, J. Eng, D. W. Speicher, S. M. Hanash, Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study. Nat. Biotechnol. 24, 333-338 (2006).
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 333-338
-
-
States, D.J.1
Omenn, G.S.2
Blackwell, T.W.3
Fermin, D.4
Eng, J.5
Speicher, D.W.6
Hanash, S.M.7
-
56
-
-
23944504308
-
Human Plasma PeptideAtlas
-
E. W. Deutsch, J. K. Eng, H. Zhang, N. L. King, A. I. Nesvizhskii, B. Lin, H. Lee, E. C. Yi, R. Ossola, R. Aebersold, Human Plasma PeptideAtlas. Proteomics 5, 3497-3500 (2005).
-
(2005)
Proteomics
, vol.5
, pp. 3497-3500
-
-
Deutsch, E.W.1
Eng, J.K.2
Zhang, H.3
King, N.L.4
Nesvizhskii, A.I.5
Lin, B.6
Lee, H.7
Yi, E.C.8
Ossola, R.9
Aebersold, R.10
-
57
-
-
85128759053
-
A list of candidate cancer biomarkers for targeted proteomics
-
M. Polanski, N. L. Anderson, A list of candidate cancer biomarkers for targeted proteomics. Biomark. Insights 1, 1-48 (2007).
-
(2007)
Biomark. Insights
, vol.1
, pp. 1-48
-
-
Polanski, M.1
Anderson, N.L.2
-
58
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
A. Krogh, B. Larsson, G. von Heijne, E. L. Sonnhammer, Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol. Biol. 305, 567-580 (2001).
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.4
-
59
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
J. D. Bendtsen, H. Nielsen, G. Von Heijne, S. Brunak, Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340, 783-795 (2004).
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
Von Heijne, G.3
Brunak, S.4
-
60
-
-
3042692704
-
Feature-based prediction of non-classical and leaderless protein secretion
-
J. D. Bendtsen, L. J. Jensen, N. Blom, G. Von Heijne, S. Brunak, Feature-based prediction of non-classical and leaderless protein secretion. Protein Eng. Des. Sel. 17, 349-356 (2004).
-
(2004)
Protein Eng. Des. Sel.
, vol.17
, pp. 349-356
-
-
Bendtsen, J.D.1
Jensen, L.J.2
Blom, N.3
Von Heijne, G.4
Brunak, S.5
-
61
-
-
84947402121
-
Rectangular confidence regions for the means of multivariate normal distributions
-
Z. Sidak, Rectangular confidence regions for the means of multivariate normal distributions. J. Am. Stat. Assoc. 62, 626-633 (1967).
-
(1967)
J. Am. Stat. Assoc.
, vol.62
, pp. 626-633
-
-
Sidak, Z.1
-
64
-
-
34247612394
-
Confidence intervals for predictive values with an emphasis to case-control studies
-
N. D. Mercaldo, K. F. Lau, X. H. Zhou, Confidence intervals for predictive values with an emphasis to case-control studies. Stat. Med. 26, 2170-2183 (2007).
-
(2007)
Stat. Med.
, vol.26
, pp. 2170-2183
-
-
Mercaldo, N.D.1
Lau, K.F.2
Zhou, X.H.3
-
65
-
-
79955595074
-
mProphet: Automated data processing and statistical validation for large-scale SRM experiments
-
L. Reiter, O. Rinner, P. Picotti, R. Hüttenhain, M. Beck, M. Y. Brusniak, M. O. Hengartner, R. Aebersold, mProphet: Automated data processing and statistical validation for large-scale SRM experiments. Nat. Methods 8, 430-435 (2011).
-
(2011)
Nat. Methods
, vol.8
, pp. 430-435
-
-
Reiter, L.1
Rinner, O.2
Picotti, P.3
Hüttenhain, R.4
Beck, M.5
Brusniak, M.Y.6
Hengartner, M.O.7
Aebersold, R.8
-
66
-
-
38649135071
-
Protein identification and peptide expression resolver: Harmonizing protein identification with protein expression data
-
P. Kearney, H. Butler, K. Eng, P. Hugo, Protein identification and peptide expression resolver: Harmonizing protein identification with protein expression data. J. Proteome Res. 7, 234-244 (2008).
-
(2008)
J. Proteome Res.
, vol.7
, pp. 234-244
-
-
Kearney, P.1
Butler, H.2
Eng, K.3
Hugo, P.4
-
69
-
-
79959499115
-
A highconfidence human plasma proteome reference set with estimated concentrations in PeptideAtlas
-
T. Farrah, E. W. Deutsch, G. S. Omenn, D. S. Campbell, Z. Sun, J. A. Bletz, P. Mallick, J. E. Katz, J. Malmström, R. Ossola, J. D. Watts, B. Lin, H. Zhang, R. L. Moritz, R. Aebersold, A highconfidence human plasma proteome reference set with estimated concentrations in PeptideAtlas. Mol. Cell. Proteomics 10, M110.006353 (2011).
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Farrah, T.1
Deutsch, E.W.2
Omenn, G.S.3
Campbell, D.S.4
Sun, Z.5
Bletz, J.A.6
Mallick, P.7
Katz, J.E.8
Malmström, J.9
Ossola, R.10
Watts, J.D.11
Lin, B.12
Zhang, H.13
Moritz, R.L.14
Aebersold, R.15
-
71
-
-
0022965475
-
An improved sequentially rejective Bonferroni test procedure
-
B. S. Holland, M. D. Copenhaver, An improved sequentially rejective Bonferroni test procedure. Biometrics 43, 737 (1987).
-
(1987)
Biometrics
, vol.43
, pp. 737
-
-
Holland, B.S.1
Copenhaver, M.D.2
|