메뉴 건너뛰기




Volumn 28, Issue 10, 2015, Pages 1914-1925

Integrating High-Dimensional Transcriptomics and Image Analysis Tools into Early Safety Screening: Proof of Concept for a New Early Drug Development Strategy

Author keywords

[No Author keywords available]

Indexed keywords

COLCHICINE; DOCETAXEL; GRISEOFULVIN; NOCODAZOLE; QUINAZOLINE; QUINOLINE; QUINOXALINE; TUBULIN; VINBLASTINE; PDE10A PROTEIN, HUMAN; PHOSPHODIESTERASE; PHOSPHODIESTERASE INHIBITOR; PYRROLIDINE DERIVATIVE; TRANSCRIPTOME;

EID: 84944722935     PISSN: 0893228X     EISSN: 15205010     Source Type: Journal    
DOI: 10.1021/acs.chemrestox.5b00103     Document Type: Article
Times cited : (11)

References (61)
  • 1
    • 84944752740 scopus 로고    scopus 로고
    • TUFTS drug development cost. http://csdd.tufts.edu/news/complete-story/pr-tufts-csdd-2014-cost-study.
    • TUFTS drug development cost
  • 2
    • 84881296154 scopus 로고    scopus 로고
    • Trial watch: phase II and phase III attrition rates 2011-2012
    • Arrowsmith, J. and Miller, P. (2013) Trial watch: phase II and phase III attrition rates 2011-2012 Nat. Rev. Drug Discovery 12, 569-569 10.1038/nrd4090
    • (2013) Nat. Rev. Drug Discovery , vol.12 , pp. 569
    • Arrowsmith, J.1    Miller, P.2
  • 3
    • 84906250752 scopus 로고    scopus 로고
    • Exploratory toxicology as an integrated part of drug discovery. Part II: screening strategies
    • Hornberg, J. J., Laursen, M., Brenden, N., Persson, M., Thougaard, A. V., Toft, D. B., and Mow, T. (2014) Exploratory toxicology as an integrated part of drug discovery. Part II: screening strategies Drug Discovery Today 19, 1137-1144 10.1016/j.drudis.2013.12.009
    • (2014) Drug Discovery Today , vol.19 , pp. 1137-1144
    • Hornberg, J.J.1    Laursen, M.2    Brenden, N.3    Persson, M.4    Thougaard, A.V.5    Toft, D.B.6    Mow, T.7
  • 7
    • 59849091019 scopus 로고    scopus 로고
    • Toward a new toxicology-evolution or revolution?
    • Hartung, T. (2008) Toward a new toxicology-evolution or revolution? ATLA, Altern. Lab. Anim. 36, 635-639
    • (2008) ATLA, Altern. Lab. Anim. , vol.36 , pp. 635-639
    • Hartung, T.1
  • 8
    • 59849129394 scopus 로고    scopus 로고
    • Food for thought on the evolution of toxicology and the phasing out of animal testing
    • Hartung, T. and Leist, M. (2008) Food for thought on the evolution of toxicology and the phasing out of animal testing Altex 25, 91-96
    • (2008) Altex , vol.25 , pp. 91-96
    • Hartung, T.1    Leist, M.2
  • 9
    • 67650445156 scopus 로고    scopus 로고
    • Toxicology for the twenty-first century
    • Hartung, T. (2009) Toxicology for the twenty-first century Nature 460, 208-212 10.1038/460208a
    • (2009) Nature , vol.460 , pp. 208-212
    • Hartung, T.1
  • 10
    • 80052910975 scopus 로고    scopus 로고
    • Food for Thought⋯ on mapping the human toxome
    • Hartung, T. and McBride, M. (2011) Food for Thought⋯ on mapping the human toxome Altex 28, 83-93 10.14573/altex.2011.2.083
    • (2011) Altex , vol.28 , pp. 83-93
    • Hartung, T.1    McBride, M.2
  • 11
    • 84862775836 scopus 로고    scopus 로고
    • Paradigm shift in toxicity testing and modeling
    • Sun, H., Xia, M., Austin, C. P., and Huang, R. (2012) Paradigm shift in toxicity testing and modeling AAPS J. 14, 473-480 10.1208/s12248-012-9358-1
    • (2012) AAPS J. , vol.14 , pp. 473-480
    • Sun, H.1    Xia, M.2    Austin, C.P.3    Huang, R.4
  • 14
    • 39749104206 scopus 로고    scopus 로고
    • Novel technologies for the discovery and quantitation of biomarkers of toxicity
    • Collings, F. B. and Vaidya, V. S. (2008) Novel technologies for the discovery and quantitation of biomarkers of toxicity Toxicology 245, 167-174 10.1016/j.tox.2007.11.020
    • (2008) Toxicology , vol.245 , pp. 167-174
    • Collings, F.B.1    Vaidya, V.S.2
  • 16
    • 84860296344 scopus 로고    scopus 로고
    • The impact of network biology in pharmacology and toxicology
    • Panagiotou, G. and Taboureau, O. (2012) The impact of network biology in pharmacology and toxicology SAR QSAR Environ. Res. 23, 221-235 10.1080/1062936X.2012.657237
    • (2012) SAR QSAR Environ. Res. , vol.23 , pp. 221-235
    • Panagiotou, G.1    Taboureau, O.2
  • 22
    • 84872327016 scopus 로고    scopus 로고
    • Discovery of a new series of [1, 2, 4] triazolo [4, 3-a] quinoxalines as dual phosphodiesterase 2/phosphodiesterase 10 (PDE2/PDE10) inhibitors
    • Andrés, J. I., Buijnsters, P., De Angelis, M., Langlois, X., Rombouts, F., Trabanco, A. A., and Vanhoof, G. (2013) Discovery of a new series of [1, 2, 4] triazolo [4, 3-a] quinoxalines as dual phosphodiesterase 2/phosphodiesterase 10 (PDE2/PDE10) inhibitors Bioorg. Med. Chem. Lett. 23, 785-790 10.1016/j.bmcl.2012.11.077
    • (2013) Bioorg. Med. Chem. Lett. , vol.23 , pp. 785-790
    • Andrés, J.I.1    Buijnsters, P.2    De Angelis, M.3    Langlois, X.4    Rombouts, F.5    Trabanco, A.A.6    Vanhoof, G.7
  • 23
    • 0025346326 scopus 로고
    • The micronucleus assay as a test for the detection of aneugenic activity
    • Vanparys, P., Vermeiren, F., Sysmans, M., and Temmerman, R. (1990) The micronucleus assay as a test for the detection of aneugenic activity Mutat. Res. Lett. 244, 95-103 10.1016/0165-7992(90)90056-P
    • (1990) Mutat. Res. Lett. , vol.244 , pp. 95-103
    • Vanparys, P.1    Vermeiren, F.2    Sysmans, M.3    Temmerman, R.4
  • 24
    • 0029965342 scopus 로고    scopus 로고
    • Direct tubulin polymerization perturbation contributes significantly to the induction of micronuclei in vivo
    • ter Haar, E., Day, B. W., and Rosenkranz, H. S. (1996) Direct tubulin polymerization perturbation contributes significantly to the induction of micronuclei in vivo Mutat. Res., Fundam. Mol. Mech. Mutagen. 350, 331-337 10.1016/0027-5107(95)00175-1
    • (1996) Mutat. Res., Fundam. Mol. Mech. Mutagen. , vol.350 , pp. 331-337
    • Ter Haar, E.1    Day, B.W.2    Rosenkranz, H.S.3
  • 26
    • 33645823677 scopus 로고    scopus 로고
    • A new summarization method for Affymetrix probe level data
    • Hochreiter, S., Clevert, D. A., and Obermayer, K. (2006) A new summarization method for Affymetrix probe level data Bioinformatics 22, 943-949 10.1093/bioinformatics/btl033
    • (2006) Bioinformatics , vol.22 , pp. 943-949
    • Hochreiter, S.1    Clevert, D.A.2    Obermayer, K.3
  • 28
    • 36448929060 scopus 로고    scopus 로고
    • I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data
    • Talloen, W., Clevert, D. A., Hochreiter, S., Amaratunga, D., Bijnens, L., Kass, S., and Göhlmann, H. W. (2007) I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data Bioinformatics 23, 2897-2902 10.1093/bioinformatics/btm478
    • (2007) Bioinformatics , vol.23 , pp. 2897-2902
    • Talloen, W.1    Clevert, D.A.2    Hochreiter, S.3    Amaratunga, D.4    Bijnens, L.5    Kass, S.6    Göhlmann, H.W.7
  • 30
    • 0347994074 scopus 로고    scopus 로고
    • Graphical exploration of gene expression data: a comparative study of three multivariate methods
    • Wouters, L., Göhlmann, H. W., Bijnens, L., Kass, S. U., Molenberghs, G., and Lewi, P. J. (2003) Graphical exploration of gene expression data: a comparative study of three multivariate methods Biometrics 59, 1131-1139 10.1111/j.0006-341X.2003.00130.x
    • (2003) Biometrics , vol.59 , pp. 1131-1139
    • Wouters, L.1    Göhlmann, H.W.2    Bijnens, L.3    Kass, S.U.4    Molenberghs, G.5    Lewi, P.J.6
  • 33
    • 0017059028 scopus 로고
    • The production of micronuclei from chromosome aberrations in irradiated cultures of human lymphocytes
    • Countryman, P. I. and Heddle, J. A. (1976) The production of micronuclei from chromosome aberrations in irradiated cultures of human lymphocytes Mutat. Res., Fundam. Mol. Mech. Mutagen. 41, 321-331 10.1016/0027-5107(76)90105-6
    • (1976) Mutat. Res., Fundam. Mol. Mech. Mutagen. , vol.41 , pp. 321-331
    • Countryman, P.I.1    Heddle, J.A.2
  • 35
    • 84944795785 scopus 로고    scopus 로고
    • DCI. http://www.dcilabs.com/index.php.
    • DCI1
  • 36
    • 84858968655 scopus 로고    scopus 로고
    • Phaedra, a protocol-driven system for analysis and validation of high-content imaging and flow cytometry
    • Cornelissen, F., Cik, M., and Gustin, E. (2012) Phaedra, a protocol-driven system for analysis and validation of high-content imaging and flow cytometry J. Biomol. Screening 17, 496-506 10.1177/1087057111432885
    • (2012) J. Biomol. Screening , vol.17 , pp. 496-506
    • Cornelissen, F.1    Cik, M.2    Gustin, E.3
  • 38
    • 84939183762 scopus 로고    scopus 로고
    • PDE10A inhibitors stimulate or suppress motor behavior dependent on the relative activation state of the direct and indirect striatal output pathways
    • Megens, A. A., Hendrickx, H. M., Mahieu, M., Wellens, A. L., Boer, P., and Vanhoof, G. (2014) PDE10A inhibitors stimulate or suppress motor behavior dependent on the relative activation state of the direct and indirect striatal output pathways Pharmacol. Res. Perspect. 2, e00057 10.1002/prp2.57
    • (2014) Pharmacol. Res. Perspect. , vol.2
    • Megens, A.A.1    Hendrickx, H.M.2    Mahieu, M.3    Wellens, A.L.4    Boer, P.5    Vanhoof, G.6
  • 39
    • 77649191871 scopus 로고    scopus 로고
    • Microtubules and resistance to tubulin-binding agents
    • Kavallaris, M. (2010) Microtubules and resistance to tubulin-binding agents Nat. Rev. Cancer 10, 194-204 10.1038/nrc2803
    • (2010) Nat. Rev. Cancer , vol.10 , pp. 194-204
    • Kavallaris, M.1
  • 40
    • 1942438028 scopus 로고    scopus 로고
    • Microtubules as a target for anticancer drugs
    • Jordan, M. A. and Wilson, L. (2004) Microtubules as a target for anticancer drugs Nat. Rev. Cancer 4, 253-265 10.1038/nrc1317
    • (2004) Nat. Rev. Cancer , vol.4 , pp. 253-265
    • Jordan, M.A.1    Wilson, L.2
  • 41
    • 80052762819 scopus 로고    scopus 로고
    • The in vitro MN assay in 2011: origin and fate, biological significance, protocols, high throughput methodologies and toxicological relevance
    • Kirsch-Volders, M., Plas, G., Elhajouji, A., Lukamowicz, M., Gonzalez, L., Vande Loock, K., and Decordier, I. (2011) The in vitro MN assay in 2011: origin and fate, biological significance, protocols, high throughput methodologies and toxicological relevance Arch. Toxicol. 85, 873-899 10.1007/s00204-011-0691-4
    • (2011) Arch. Toxicol. , vol.85 , pp. 873-899
    • Kirsch-Volders, M.1    Plas, G.2    Elhajouji, A.3    Lukamowicz, M.4    Gonzalez, L.5    Vande Loock, K.6    Decordier, I.7
  • 42
    • 72049087982 scopus 로고    scopus 로고
    • An in vitro micronucleus assay with size-classified micronucleus counting to discriminate aneugens from clastogens
    • Hashimoto, K., Nakajima, Y., Matsumura, S., and Chatani, F. (2010) An in vitro micronucleus assay with size-classified micronucleus counting to discriminate aneugens from clastogens Toxicol. In Vitro 24, 208-216 10.1016/j.tiv.2009.09.006
    • (2010) Toxicol. In Vitro , vol.24 , pp. 208-216
    • Hashimoto, K.1    Nakajima, Y.2    Matsumura, S.3    Chatani, F.4
  • 43
    • 0032806136 scopus 로고    scopus 로고
    • A proposal for a simple way to distinguish aneugens from clastogens in the in vitro micronucleus test
    • Matsuoka, A., Matsuura, K., Sakamoto, H., Hayashi, M., and Sofuni, T. (1999) A proposal for a simple way to distinguish aneugens from clastogens in the in vitro micronucleus test Mutagenesis 14, 385-389 10.1093/mutage/14.4.385
    • (1999) Mutagenesis , vol.14 , pp. 385-389
    • Matsuoka, A.1    Matsuura, K.2    Sakamoto, H.3    Hayashi, M.4    Sofuni, T.5
  • 44
    • 2142656351 scopus 로고    scopus 로고
    • Regulation of microtubule, apoptosis, and cell cycle-related genes by taxotere in prostate cancer cells analyzed by microarray
    • Li, Y., Li, X., Hussain, M., and Sarkar, F. H. (2004) Regulation of microtubule, apoptosis, and cell cycle-related genes by taxotere in prostate cancer cells analyzed by microarray Neoplasia 6, 158-167 10.1593/neo.03391
    • (2004) Neoplasia , vol.6 , pp. 158-167
    • Li, Y.1    Li, X.2    Hussain, M.3    Sarkar, F.H.4
  • 45
    • 17544366715 scopus 로고    scopus 로고
    • Localization of the vinblastine-binding site on β-tubulin
    • Rai, S. S. and Wolff, J. (1996) Localization of the vinblastine-binding site on β-tubulin J. Biol. Chem. 271, 14707-14711 10.1074/jbc.271.25.14707
    • (1996) J. Biol. Chem. , vol.271 , pp. 14707-14711
    • Rai, S.S.1    Wolff, J.2
  • 46
    • 48949120324 scopus 로고    scopus 로고
    • A simple and robust method for connecting small-molecule drugs using gene-expression signatures
    • Zhang, S. D. and Gant, T. W. (2008) A simple and robust method for connecting small-molecule drugs using gene-expression signatures BMC Bioinf. 9, 258 10.1186/1471-2105-9-258
    • (2008) BMC Bioinf. , vol.9 , pp. 258
    • Zhang, S.D.1    Gant, T.W.2
  • 47
    • 77949814178 scopus 로고    scopus 로고
    • Building a tiered approach to in vitro predictive toxicity screening: a focus on assays with in vivo relevance
    • McKim, J. M., Jr (2010) Building a tiered approach to in vitro predictive toxicity screening: a focus on assays with in vivo relevance Comb. Chem. High Throughput Screening 13, 188-206 10.2174/138620710790596736
    • (2010) Comb. Chem. High Throughput Screening , vol.13 , pp. 188-206
    • McKim, J.M.1
  • 48
    • 77954316269 scopus 로고    scopus 로고
    • Overcoming psychological barriers to good discovery decisions
    • Chadwick, A. T. and Segall, M. D. (2010) Overcoming psychological barriers to good discovery decisions Drug Discovery Today 15, 561-569 10.1016/j.drudis.2010.05.007
    • (2010) Drug Discovery Today , vol.15 , pp. 561-569
    • Chadwick, A.T.1    Segall, M.D.2
  • 50
    • 84867889521 scopus 로고    scopus 로고
    • An overview of tubulin inhibitors that interact with the colchicine binding site
    • Lu, Y., Chen, J., Xiao, M., Li, W., and Miller, D. D. (2012) An overview of tubulin inhibitors that interact with the colchicine binding site Pharm. Res. 29, 2943-2971 10.1007/s11095-012-0828-z
    • (2012) Pharm. Res. , vol.29 , pp. 2943-2971
    • Lu, Y.1    Chen, J.2    Xiao, M.3    Li, W.4    Miller, D.D.5
  • 51
    • 0024431507 scopus 로고
    • Autoregulatory control of beta-tubulin mRNA stability is linked to translation elongation
    • Gay, D. A., Sisodia, S. S., and Cleveland, D. W. (1989) Autoregulatory control of beta-tubulin mRNA stability is linked to translation elongation Proc. Natl. Acad. Sci. U. S. A. 86, 5763-5767 10.1073/pnas.86.15.5763
    • (1989) Proc. Natl. Acad. Sci. U. S. A. , vol.86 , pp. 5763-5767
    • Gay, D.A.1    Sisodia, S.S.2    Cleveland, D.W.3
  • 52
    • 0020556519 scopus 로고
    • Is Apparent Autoregulatory Control of Tubulin Synthesis Nontranscriptionally Regulated?
    • Cleveland, D. W. and Havercroft, J. C. (1983) Is Apparent Autoregulatory Control of Tubulin Synthesis Nontranscriptionally Regulated? J. Cell Biol. 97, 919-924 10.1083/jcb.97.3.919
    • (1983) J. Cell Biol. , vol.97 , pp. 919-924
    • Cleveland, D.W.1    Havercroft, J.C.2
  • 53
    • 84876343455 scopus 로고    scopus 로고
    • Aneuploidy in health, disease, and aging
    • Ricke, R. M. and van Deursen, J. M. (2013) Aneuploidy in health, disease, and aging J. Cell Biol. 201, 11-21 10.1083/jcb.201301061
    • (2013) J. Cell Biol. , vol.201 , pp. 11-21
    • Ricke, R.M.1    Van Deursen, J.M.2
  • 54
    • 78650671402 scopus 로고    scopus 로고
    • Potential thresholds for genotoxic effects by micronucleus scoring
    • Elhajouji, A., Lukamowicz, M., Cammerer, Z., and Kirsch-Volders, M. (2011) Potential thresholds for genotoxic effects by micronucleus scoring Mutagenesis 26, 199-204 10.1093/mutage/geq089
    • (2011) Mutagenesis , vol.26 , pp. 199-204
    • Elhajouji, A.1    Lukamowicz, M.2    Cammerer, Z.3    Kirsch-Volders, M.4
  • 55
    • 34347344782 scopus 로고    scopus 로고
    • Application of toxicogenomics to genetic toxicology risk assessment
    • Thybaud, V., Le Fevre, A. C., and Boitier, E. (2007) Application of toxicogenomics to genetic toxicology risk assessment Environ. Mol. Mutagen. 48, 369-379 10.1002/em.20304
    • (2007) Environ. Mol. Mutagen. , vol.48 , pp. 369-379
    • Thybaud, V.1    Le Fevre, A.C.2    Boitier, E.3
  • 56
    • 84871257721 scopus 로고    scopus 로고
    • Comparison of genotoxicant-modified transcriptomic responses in conventional and epigenetically stabilized primary rat hepatocytes with in vivo rat liver data
    • Doktorova, T. Y., Ellinger-Ziegelbauer, H., Vinken, M., Vanhaecke, T., van Delft, J., Kleinjans, J., Ahr, H.-J., and Rogiers, V. (2012) Comparison of genotoxicant-modified transcriptomic responses in conventional and epigenetically stabilized primary rat hepatocytes with in vivo rat liver data Arch. Toxicol. 86, 1703-1715 10.1007/s00204-012-0946-8
    • (2012) Arch. Toxicol. , vol.86 , pp. 1703-1715
    • Doktorova, T.Y.1    Ellinger-Ziegelbauer, H.2    Vinken, M.3    Vanhaecke, T.4    Van Delft, J.5    Kleinjans, J.6    Ahr, H.-J.7    Rogiers, V.8
  • 57
    • 84888296705 scopus 로고    scopus 로고
    • Way forward in case of a false positive in vitro genotoxicity result for a cosmetic substance?
    • Doktorova, T. Y., Ates, G., Vinken, M., Vanhaecke, T., and Rogiers, V. (2014) Way forward in case of a false positive in vitro genotoxicity result for a cosmetic substance? Toxicol. In Vitro 28, 54-59 10.1016/j.tiv.2013.09.022
    • (2014) Toxicol. In Vitro , vol.28 , pp. 54-59
    • Doktorova, T.Y.1    Ates, G.2    Vinken, M.3    Vanhaecke, T.4    Rogiers, V.5
  • 59
    • 80052827182 scopus 로고    scopus 로고
    • In vitro transcriptomic prediction of hepatotoxicity for early drug discovery
    • Cheng, F., Theodorescu, D., Schulman, I. G., and Lee, J. K. (2011) In vitro transcriptomic prediction of hepatotoxicity for early drug discovery J. Theor. Biol. 290, 27-36 10.1016/j.jtbi.2011.08.009
    • (2011) J. Theor. Biol. , vol.290 , pp. 27-36
    • Cheng, F.1    Theodorescu, D.2    Schulman, I.G.3    Lee, J.K.4
  • 60
  • 61
    • 84944795786 scopus 로고    scopus 로고
    • NIH LINCS Program. http://www.lincsproject.org/.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.