-
1
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
10.1016/S0092-8674(04)00045-5 1:CAS:528:DC%2BD2cXhtVals7o%3D 14744438
-
Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004;116:281-97.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
10.1016/j.cell.2009.01.002 3794896 1:CAS:528:DC%2BD1MXhs1Kiuro%3D 19167326
-
Bartel DP. MicroRNAs: target recognition and regulatory functions. Cell. 2009;136:215-33.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
3
-
-
33748587841
-
A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes
-
10.1016/j.cell.2006.07.031 1:CAS:528:DC%2BD28XhtVCnsrvI 16990141
-
Miranda KC, Huynh T, Tay Y, Ang YS, Tam WL, Thomson AM, et al. A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell. 2006;126:1203-17.
-
(2006)
Cell
, vol.126
, pp. 1203-1217
-
-
Miranda, K.C.1
Huynh, T.2
Tay, Y.3
Ang, Y.S.4
Tam, W.L.5
Thomson, A.M.6
-
4
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
10.1101/gr.082701.108 2612969 1:CAS:528:DC%2BD1MXptFWjuw%3D%3D 18955434
-
Friedman RC, Farh KK, Burge CB, Bartel DP. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 2009;19:92-105.
-
(2009)
Genome Res
, vol.19
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.2
Burge, C.B.3
Bartel, D.P.4
-
5
-
-
77957766910
-
Desperately seeking microRNA targets
-
10.1038/nsmb.1921 1:CAS:528:DC%2BC3cXht1CnsLzO 20924405
-
Thomas M, Lieberman J, Lal A. Desperately seeking microRNA targets. Nat Struct Mol Biol. 2010;17:1169-74.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 1169-1174
-
-
Thomas, M.1
Lieberman, J.2
Lal, A.3
-
6
-
-
33645294070
-
Oncomirs - MicroRNAs with a role in cancer
-
10.1038/nrc1840 1:CAS:528:DC%2BD28XivVyqtrs%3D 16557279
-
Esquela-Kerscher A, Slack FJ. Oncomirs - microRNAs with a role in cancer. Nat Rev Cancer. 2006;6:259-69.
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 259-269
-
-
Esquela-Kerscher, A.1
Slack, F.J.2
-
7
-
-
18744396337
-
Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia
-
10.1073/pnas.242606799 137750 1:CAS:528:DC%2BD3sXjvVOl 12434020
-
Calin GA, Dumitru CD, Shimizu M, Bichi R, Zupo S, Noch E, et al. Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia. Proc Natl Acad Sci U S A. 2002;99:15524-9.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 15524-15529
-
-
Calin, G.A.1
Dumitru, C.D.2
Shimizu, M.3
Bichi, R.4
Zupo, S.5
Noch, E.6
-
8
-
-
54849408182
-
An analysis of human microRNA and disease associations
-
10.1371/journal.pone.0003420 2559869 18923704
-
Lu M, Zhang Q, Deng M, Miao J, Guo Y, Gao W, et al. An analysis of human microRNA and disease associations. PLoS One. 2008;3:e3420.
-
(2008)
PLoS One.
, vol.3
, pp. 3420
-
-
Lu, M.1
Zhang, Q.2
Deng, M.3
Miao, J.4
Guo, Y.5
Gao, W.6
-
9
-
-
33750370444
-
MicroRNA signatures in human cancers
-
10.1038/nrc1997 1:CAS:528:DC%2BD28XhtFWhs7fM 17060945
-
Calin GA, Croce CM. MicroRNA signatures in human cancers. Nat Rev Cancer. 2006;6:857-66.
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 857-866
-
-
Calin, G.A.1
Croce, C.M.2
-
10
-
-
84868326494
-
A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers
-
10.1101/gr.133991.111 3483559 1:CAS:528:DC%2BC38Xhs1ektr%2FP 22745231
-
Plaisier CL, Pan M, Baliga NS. A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers. Genome Res. 2012;22:2302-14.
-
(2012)
Genome Res
, vol.22
, pp. 2302-2314
-
-
Plaisier, C.L.1
Pan, M.2
Baliga, N.S.3
-
11
-
-
84869219338
-
MiR-34 - A microRNA replacement therapy is headed to the clinic
-
Bader AG. miR-34 - a microRNA replacement therapy is headed to the clinic. Front Genet. 2012;3(120):1-9.
-
(2012)
Front Genet
, vol.3
, Issue.120
, pp. 1-9
-
-
Bader, A.G.1
-
12
-
-
85013774429
-
4LBA A phase 1 study of first-in-class microRNA-34 mimic, MRX34, in patients with hepatocellular carcinoma or advanced cancer with liver metastasis
-
10.1016/S0959-8049(14)70725-7
-
Beg M, Brenner A, Sachdev J, Borad M, Cortes J, Tibes R, et al. 4LBA A phase 1 study of first-in-class microRNA-34 mimic, MRX34, in patients with hepatocellular carcinoma or advanced cancer with liver metastasis. Eur J Can. 2014;50:196.
-
(2014)
Eur J Can
, vol.50
, pp. 196
-
-
Beg, M.1
Brenner, A.2
Sachdev, J.3
Borad, M.4
Cortes, J.5
Tibes, R.6
-
13
-
-
34548316982
-
MicroRNA sponges: Competitive inhibitors of small RNAs in mammalian cells
-
10.1038/nmeth1079 1:CAS:528:DC%2BD2sXps12gsbo%3D 17694064
-
Ebert MS, Neilson JR, Sharp PA. MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells. Nat Methods. 2007;4:721-6.
-
(2007)
Nat Methods
, vol.4
, pp. 721-726
-
-
Ebert, M.S.1
Neilson, J.R.2
Sharp, P.A.3
-
14
-
-
36849060584
-
Endogenous microRNA can be broadly exploited to regulate transgene expression according to tissue, lineage and differentiation state
-
10.1038/nbt1372 1:CAS:528:DC%2BD2sXhsVSjurrL 18026085
-
Brown BD, Gentner B, Cantore A, Colleoni S, Amendola M, Zingale A, et al. Endogenous microRNA can be broadly exploited to regulate transgene expression according to tissue, lineage and differentiation state. Nat Biotechnol. 2007;25:1457-67.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1457-1467
-
-
Brown, B.D.1
Gentner, B.2
Cantore, A.3
Colleoni, S.4
Amendola, M.5
Zingale, A.6
-
15
-
-
58149252151
-
Stable knockdown of microRNA in vivo by lentiviral vectors
-
10.1038/nmeth.1277 1:CAS:528:DC%2BD1cXhsVenurbE 19043411
-
Gentner B, Schira G, Giustacchini A, Amendola M, Brown BD, Ponzoni M, et al. Stable knockdown of microRNA in vivo by lentiviral vectors. Nat Methods. 2009;6:63-6.
-
(2009)
Nat Methods
, vol.6
, pp. 63-66
-
-
Gentner, B.1
Schira, G.2
Giustacchini, A.3
Amendola, M.4
Brown, B.D.5
Ponzoni, M.6
-
16
-
-
78149303249
-
MicroRNA sponges: Progress and possibilities
-
10.1261/rna.2414110 2957044 1:CAS:528:DC%2BC3cXhsVGhsL7I 20855538
-
Ebert MS, Sharp PA. MicroRNA sponges: progress and possibilities. RNA. 2010;16:2043-50.
-
(2010)
RNA
, vol.16
, pp. 2043-2050
-
-
Ebert, M.S.1
Sharp, P.A.2
-
17
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
10.1038/nature09144 3206313 1:CAS:528:DC%2BC3cXnvFSgtLk%3D 20577206
-
Poliseno L, Salmena L, Zhang J, Carver B, Haveman WJ, Pandolfi PP. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature. 2010;465:1033-8.
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
Carver, B.4
Haveman, W.J.5
Pandolfi, P.P.6
-
18
-
-
79961170994
-
A ceRNA hypothesis: The Rosetta Stone of a hidden RNA language?
-
10.1016/j.cell.2011.07.014 3235919 1:CAS:528:DC%2BC3MXpvFGhs7k%3D 21802130
-
Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi PP. A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell. 2011;146:353-8.
-
(2011)
Cell
, vol.146
, pp. 353-358
-
-
Salmena, L.1
Poliseno, L.2
Tay, Y.3
Kats, L.4
Pandolfi, P.P.5
-
19
-
-
84892573723
-
The multilayered complexity of ceRNA crosstalk and competition
-
10.1038/nature12986 4113481 1:CAS:528:DC%2BC2cXotFGjsw%3D%3D 24429633
-
Tay Y, Rinn J, Pandolfi PP. The multilayered complexity of ceRNA crosstalk and competition. Nature. 2014;505:344-52.
-
(2014)
Nature
, vol.505
, pp. 344-352
-
-
Tay, Y.1
Rinn, J.2
Pandolfi, P.P.3
-
20
-
-
34547497309
-
Target mimicry provides a new mechanism for regulation of microRNA activity
-
10.1038/ng2079 1:CAS:528:DC%2BD2sXot1CmsLY%3D 17643101
-
Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, Rubio-Somoza I, et al. Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet. 2007;39:1033-7.
-
(2007)
Nat Genet
, vol.39
, pp. 1033-1037
-
-
Franco-Zorrilla, J.M.1
Valli, A.2
Todesco, M.3
Mateos, I.4
Puga, M.I.5
Rubio-Somoza, I.6
-
21
-
-
77953798171
-
Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA
-
10.1126/science.1187197 3075239 1:CAS:528:DC%2BC3cXnsVWntrk%3D 20558719
-
Cazalla D, Yario T, Steitz JA. Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA. Science. 2010;328:1563-6.
-
(2010)
Science
, vol.328
, pp. 1563-1566
-
-
Cazalla, D.1
Yario, T.2
Steitz, J.A.3
-
22
-
-
84875369248
-
Circular RNAs are a large class of animal RNAs with regulatory potency
-
10.1038/nature11928 1:CAS:528:DC%2BC3sXktlCmsLk%3D 23446348
-
Memczak S, Jens M, Elefsinioti A, Torti F, Krueger J, Rybak A, et al. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature. 2013;495:333-8.
-
(2013)
Nature
, vol.495
, pp. 333-338
-
-
Memczak, S.1
Jens, M.2
Elefsinioti, A.3
Torti, F.4
Krueger, J.5
Rybak, A.6
-
23
-
-
80054715378
-
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
-
10.1016/j.cell.2011.09.028
-
Cesana M, Cacchiarelli D, Legnini I, Santini T, Sthandier O, Chinappi M, et al. A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell. 2001;147:358-69.
-
(2001)
Cell
, vol.147
, pp. 358-369
-
-
Cesana, M.1
Cacchiarelli, D.2
Legnini, I.3
Santini, T.4
Sthandier, O.5
Chinappi, M.6
-
24
-
-
84868676906
-
Evidence for conserved post-transcriptional roles of unitary pseudogenes and for frequent bifunctionality of mRNAs
-
10.1186/gb-2012-13-11-r102 3580494 23153069
-
Marques AC, Tan J, Lee S, Kong L, Heger A, Ponting CP. Evidence for conserved post-transcriptional roles of unitary pseudogenes and for frequent bifunctionality of mRNAs. Genome Biol. 2012;13:R102.
-
(2012)
Genome Biol
, vol.13
, pp. 102
-
-
Marques, A.C.1
Tan, J.2
Lee, S.3
Kong, L.4
Heger, A.5
Ponting, C.P.6
-
25
-
-
84876367541
-
Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal
-
10.1016/j.devcel.2013.03.002 1:CAS:528:DC%2BC3sXltVCjtr0%3D 23541921
-
Wang Y, Xu Z, Jiang J, Xu C, Kang J, Xiao L, et al. Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal. Dev Cell. 2013;25:69-80.
-
(2013)
Dev Cell
, vol.25
, pp. 69-80
-
-
Wang, Y.1
Xu, Z.2
Jiang, J.3
Xu, C.4
Kang, J.5
Xiao, L.6
-
26
-
-
84904748043
-
Analysing the relationship between lncRNA and protein-coding gene and the role of lncRNA as ceRNA in pulmonary fibrosis
-
10.1111/jcmm.12243 1:CAS:528:DC%2BC2cXht1egt7jE 24702795
-
Song X, Cao G, Jing L, Lin S, Wang X, Zhang J, et al. Analysing the relationship between lncRNA and protein-coding gene and the role of lncRNA as ceRNA in pulmonary fibrosis. J Cell Mol Med. 2014;18:991-1003.
-
(2014)
J Cell Mol Med
, vol.18
, pp. 991-1003
-
-
Song, X.1
Cao, G.2
Jing, L.3
Lin, S.4
Wang, X.5
Zhang, J.6
-
27
-
-
77956542998
-
CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer
-
10.1093/nar/gkq285 2938198 1:CAS:528:DC%2BC3cXhtFGgsLfE 20423907
-
Wang J, Liu X, Wu H, Ni P, Gu Z, Qiao Y, et al. CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer. Nucleic Acids Res. 2010;38:5366-83.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5366-5383
-
-
Wang, J.1
Liu, X.2
Wu, H.3
Ni, P.4
Gu, Z.5
Qiao, Y.6
-
28
-
-
84908894973
-
Genome-wide analysis of noncoding regulatory mutations in cancer
-
10.1038/ng.3101 1:CAS:528:DC%2BC2cXhs1ehsr%2FF 25261935
-
Weinhold N, Jacobsen A, Schultz N, Sander C, Lee W. Genome-wide analysis of noncoding regulatory mutations in cancer. Nat Genet. 2014;46:1160-5.
-
(2014)
Nat Genet
, vol.46
, pp. 1160-1165
-
-
Weinhold, N.1
Jacobsen, A.2
Schultz, N.3
Sander, C.4
Lee, W.5
-
29
-
-
84946040120
-
COSMIC: Exploring the world's knowledge of somatic mutations in human cancer
-
10.1093/nar/gku1075 25355519
-
Forbes SA, Beare D, Gunasekaran P, Leung K, Bindal N, Boutselakis H, et al. COSMIC: exploring the world's knowledge of somatic mutations in human cancer. Nucleic Acids Res. 2015;43:D805-11.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 805-811
-
-
Forbes, S.A.1
Beare, D.2
Gunasekaran, P.3
Leung, K.4
Bindal, N.5
Boutselakis, H.6
-
30
-
-
68749113985
-
Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells
-
10.1016/j.cell.2009.06.016 2819821 1:CAS:528:DC%2BD1MXhsVCjs7rM 19703394
-
Mayr C, Bartel DP. Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells. Cell. 2009;138:673-84.
-
(2009)
Cell
, vol.138
, pp. 673-684
-
-
Mayr, C.1
Bartel, D.P.2
-
31
-
-
84885607201
-
CeRNA cross-talk in cancer: When ce-bling rivalries go awry
-
10.1158/2159-8290.CD-13-0202 3801300 1:CAS:528:DC%2BC3sXhs1WnsrnM 24072616
-
Karreth FA, Pandolfi PP. ceRNA cross-talk in cancer: when ce-bling rivalries go awry. Cancer Discov. 2013;3:1113-21.
-
(2013)
Cancer Discov
, vol.3
, pp. 1113-1121
-
-
Karreth, F.A.1
Pandolfi, P.P.2
-
32
-
-
84918545890
-
Pseudogene ptenp1 functions as a competing endogenous rna to suppress clear cell renal cell carcinoma progression
-
In press.
-
Yu G, Yao W, Gumireddy K, Li A, Wang J, Xiao W, et al. Pseudogene PTENP1 functions as a competing endogenous RNA to suppress clear cell renal cell carcinoma progression. Mol Cancer Ther. 2014; In press.
-
(2014)
Mol Cancer Ther.
-
-
Yu, G.1
Yao, W.2
Gumireddy, K.3
Li, A.4
Wang, J.5
Xiao, W.6
-
33
-
-
78149442860
-
Expression of versican 3'-untranslated region modulates endogenous microRNA functions
-
10.1371/journal.pone.0013599 2963607 21049042
-
Lee DY, Jeyapalan Z, Fang L, Yang J, Zhang Y, Yee AY, et al. Expression of versican 3'-untranslated region modulates endogenous microRNA functions. PLoS One. 2010;5:e13599.
-
(2010)
PLoS One.
, vol.5
, pp. 13599
-
-
Lee, D.Y.1
Jeyapalan, Z.2
Fang, L.3
Yang, J.4
Zhang, Y.5
Yee, A.Y.6
-
34
-
-
80054700538
-
Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs
-
10.1016/j.cell.2011.09.029 3235920 1:CAS:528:DC%2BC3MXhtlaksb3K 22000013
-
Tay Y, Kats L, Salmena L, Weiss D, Tan SM, Ala U, et al. Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs. Cell. 2011;147:344-57.
-
(2011)
Cell
, vol.147
, pp. 344-357
-
-
Tay, Y.1
Kats, L.2
Salmena, L.3
Weiss, D.4
Tan, S.M.5
Ala, U.6
-
35
-
-
80054681545
-
In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma
-
10.1016/j.cell.2011.09.032 3236086 1:CAS:528:DC%2BC3MXhtlaksbrM 22000016
-
Karreth FA, Tay Y, Perna D, Ala U, Tan SM, Rust AG, et al. In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma. Cell. 2011;147:382-95.
-
(2011)
Cell
, vol.147
, pp. 382-395
-
-
Karreth, F.A.1
Tay, Y.2
Perna, D.3
Ala, U.4
Tan, S.M.5
Rust, A.G.6
-
36
-
-
80054689794
-
An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma
-
10.1016/j.cell.2011.09.041 3214599 1:CAS:528:DC%2BC3MXhtlaksb3E 22000015
-
Sumazin P, Yang X, Chiu HS, Chung WJ, Iyer A, Llobet-Navas D, et al. An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell. 2011;147:370-81.
-
(2011)
Cell
, vol.147
, pp. 370-381
-
-
Sumazin, P.1
Yang, X.2
Chiu, H.S.3
Chung, W.J.4
Iyer, A.5
Llobet-Navas, D.6
-
37
-
-
84857066786
-
Modular regulatory principles of large non-coding RNAs
-
10.1038/nature10887 4197003 1:CAS:528:DC%2BC38Xit12gsbw%3D 22337053
-
Guttman M, Rinn JL. Modular regulatory principles of large non-coding RNAs. Nature. 2012;482:339-46.
-
(2012)
Nature
, vol.482
, pp. 339-346
-
-
Guttman, M.1
Rinn, J.L.2
-
38
-
-
84899630922
-
Linc-RNA-RoR acts as a "sponge" against mediation of the differentiation of endometrial cancer stem cells by microRNA-145
-
10.1016/j.ygyno.2014.02.033 1:CAS:528:DC%2BC2cXktlWiur8%3D 24589415
-
Zhou X, Gao Q, Wang J, Zhang X, Liu K, Duan Z. Linc-RNA-RoR acts as a "sponge" against mediation of the differentiation of endometrial cancer stem cells by microRNA-145. Gynecol Oncol. 2014;133:333-9.
-
(2014)
Gynecol Oncol
, vol.133
, pp. 333-339
-
-
Zhou, X.1
Gao, Q.2
Wang, J.3
Zhang, X.4
Liu, K.5
Duan, Z.6
-
39
-
-
84925341738
-
Long non-coding RNA and microRNAs might act in regulating the expression of BARD1 mRNAs
-
10.1016/j.biocel.2014.06.018 1:CAS:528:DC%2BC2cXht1Wjs7vE 25008968
-
Pilyugin M, Irminger-Finger I. Long non-coding RNA and microRNAs might act in regulating the expression of BARD1 mRNAs. Int J Biochem Cell Biol. 2014;54:356-67.
-
(2014)
Int J Biochem Cell Biol
, vol.54
, pp. 356-367
-
-
Pilyugin, M.1
Irminger-Finger, I.2
-
40
-
-
84899984643
-
Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331-3p in gastric cancer
-
10.1186/1476-4598-13-92 4021402 1:CAS:528:DC%2BC2MXjvVKhtb4%3D 24775712
-
Liu XH, Sun M, Nie FQ, Ge YB, Zhang EB, Yin DD, et al. Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331-3p in gastric cancer. Mol Cancer. 2014;13:92.
-
(2014)
Mol Cancer
, vol.13
, pp. 92
-
-
Liu, X.H.1
Sun, M.2
Nie, F.Q.3
Ge, Y.B.4
Zhang, E.B.5
Yin, D.D.6
-
41
-
-
84961288501
-
The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo
-
In press.
-
Karreth FK, Reschke M, Ruocco A, Ng C, Chapuy B, Léopold V, et al. The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo. Cell. 2015; In press.
-
(2015)
Cell
-
-
Karreth, F.K.1
Reschke, M.2
Ruocco, A.3
Ng, C.4
Chapuy, B.5
Léopold, V.6
-
42
-
-
84924330592
-
Competition between target sites of regulators shapes post-transcriptional gene regulation
-
10.1038/nrg3853 1:CAS:528:DC%2BC2cXitFamsr%2FL 25488579
-
Jens M, Rajewsky N. Competition between target sites of regulators shapes post-transcriptional gene regulation. Nat Rev Genet. 2015;16:113-26.
-
(2015)
Nat Rev Genet
, vol.16
, pp. 113-126
-
-
Jens, M.1
Rajewsky, N.2
-
43
-
-
80052266532
-
MicroRNAs can generate thresholds in target gene expression
-
10.1038/ng.905 3163764 1:CAS:528:DC%2BC3MXhtVGksr%2FN 21857679
-
Mukherji S, Ebert MS, Zheng GX, Tsang JS, Sharp PA, van Oudenaarden A. MicroRNAs can generate thresholds in target gene expression. Nat Genet. 2011;43:854-9.
-
(2011)
Nat Genet
, vol.43
, pp. 854-859
-
-
Mukherji, S.1
Ebert, M.S.2
Zheng, G.X.3
Tsang, J.S.4
Sharp, P.A.5
Van Oudenaarden, A.6
-
44
-
-
84870038812
-
Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties
-
10.1016/j.cell.2012.10.036 3595543 1:CAS:528:DC%2BC38Xhsleitr3E 23178124
-
Wee LM, Flores-Jasso CF, Salomon WE, Zamore PD. Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties. Cell. 2012;151:1055-67.
-
(2012)
Cell
, vol.151
, pp. 1055-1067
-
-
Wee, L.M.1
Flores-Jasso, C.F.2
Salomon, W.E.3
Zamore, P.D.4
-
45
-
-
56949098506
-
Molecular titration and ultrasensitivity in regulatory networks
-
10.1016/j.jmb.2008.09.079 1:CAS:528:DC%2BD1cXhsVKru73M 18938177
-
Buchler N, Louis M. Molecular titration and ultrasensitivity in regulatory networks. J Mol Biol. 2008;384:1106-19.
-
(2008)
J Mol Biol
, vol.384
, pp. 1106-1119
-
-
Buchler, N.1
Louis, M.2
-
46
-
-
84876899530
-
Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments
-
10.1073/pnas.1222509110 3645534 1:CAS:528:DC%2BC3sXoslSks7k%3D 23536298
-
Ala U, Karreth FA, Bosia C, Pagnani A, Taulli R, Léopold V, et al. Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments. Proc Natl Acad Sci U S A. 2013;110:7154-9.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 7154-7159
-
-
Ala, U.1
Karreth, F.A.2
Bosia, C.3
Pagnani, A.4
Taulli, R.5
Léopold, V.6
-
47
-
-
84879486402
-
Modelling competing endogenous RNA networks
-
10.1371/journal.pone.0066609 3694070 1:CAS:528:DC%2BC3sXhtFSjsrfL 23840508
-
Bosia C, Pagnani A, Zecchina R. Modelling competing endogenous RNA networks. PLoS One. 2013;8:e66609.
-
(2013)
PLoS One.
, vol.8
, pp. 66609
-
-
Bosia, C.1
Pagnani, A.2
Zecchina, R.3
-
48
-
-
84874833554
-
MicroRNAs as a selective channel of communication between competing RNAs: A steady-state theory
-
10.1016/j.bpj.2013.01.012 3870798 1:CAS:528:DC%2BC3sXktFWntbg%3D 23473503
-
Figliuzzi M, Marinari E, De Martino A. MicroRNAs as a selective channel of communication between competing RNAs: a steady-state theory. Biophys J. 2013;104:1203-13.
-
(2013)
Biophys J
, vol.104
, pp. 1203-1213
-
-
Figliuzzi, M.1
Marinari, E.2
De Martino, A.3
-
49
-
-
84907344020
-
RNA-based regulation: Dynamics and response to perturbations of competing RNAs
-
10.1016/j.bpj.2014.06.035 1:CAS:528:DC%2BC2cXhsValtbfJ 25140437
-
Figliuzzi M, De Martino A, Marinari E. RNA-based regulation: dynamics and response to perturbations of competing RNAs. Biophys J. 2014;107:1011-22.
-
(2014)
Biophys J
, vol.107
, pp. 1011-1022
-
-
Figliuzzi, M.1
De Martino, A.2
Marinari, E.3
-
50
-
-
84924302007
-
Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit
-
10.1073/pnas.1413896112 4364186 1:CAS:528:DC%2BC2MXjtFemu7g%3D 25713348
-
Yuan Y, Liu B, Xie P, Zhang MQ, Li Y, Xie Z, et al. Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit. Proc Natl Acad Sci U S A. 2015;112:3158-63.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. 3158-3163
-
-
Yuan, Y.1
Liu, B.2
Xie, P.3
Zhang, M.Q.4
Li, Y.5
Xie, Z.6
-
51
-
-
84864448111
-
High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries
-
10.1038/nmeth.2078 3518396 1:CAS:528:DC%2BC38XpsVWiu78%3D 22751203
-
Mullokandov G, Baccarini A, Ruzo A, Jayaprakash AD, Tung N, Israelow B, et al. High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries. Nat Methods. 2012;9:840-6.
-
(2012)
Nat Methods
, vol.9
, pp. 840-846
-
-
Mullokandov, G.1
Baccarini, A.2
Ruzo, A.3
Jayaprakash, A.D.4
Tung, N.5
Israelow, B.6
-
52
-
-
84901273489
-
Interactions between distant ceRNAs in regulatory networks
-
10.1016/j.bpj.2014.03.040 1:CAS:528:DC%2BC2cXoslygsbc%3D 24853754
-
Nitzan M, Steiman-Shimony A, Altuvia Y, Biham O, Margalit H. Interactions between distant ceRNAs in regulatory networks. Biophys J. 2014;106:2254-66.
-
(2014)
Biophys J
, vol.106
, pp. 2254-2266
-
-
Nitzan, M.1
Steiman-Shimony, A.2
Altuvia, Y.3
Biham, O.4
Margalit, H.5
-
53
-
-
84922418997
-
Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition
-
In press.
-
Bosson AD, Zamudio JR, Sharp PA. Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition. Mol Cell. 2014; In press.
-
(2014)
Mol Cell
-
-
Bosson, A.D.1
Zamudio, J.R.2
Sharp, P.A.3
-
54
-
-
84892374204
-
HMGA2 functions as a competing endogenous RNA to promote lung cancer progression
-
10.1038/nature12785 1:CAS:528:DC%2BC2cXltVOjug%3D%3D 24305048
-
Kumar MS, Armenteros-Monterroso E, East P, Chakravorty P, Matthews N, Winslow MM, et al. HMGA2 functions as a competing endogenous RNA to promote lung cancer progression. Nature. 2014;505:212-7.
-
(2014)
Nature
, vol.505
, pp. 212-217
-
-
Kumar, M.S.1
Armenteros-Monterroso, E.2
East, P.3
Chakravorty, P.4
Matthews, N.5
Winslow, M.M.6
-
55
-
-
84901838697
-
Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance
-
10.1016/j.molcel.2014.03.045 1:CAS:528:DC%2BC2cXnsVWktbg%3D 24793693
-
Denzler R, Agarwal V, Stefano J, Bartel DP, Stoffel M. Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance. Mol Cell. 2014;54:766-76.
-
(2014)
Mol Cell
, vol.54
, pp. 766-776
-
-
Denzler, R.1
Agarwal, V.2
Stefano, J.3
Bartel, D.P.4
Stoffel, M.5
-
56
-
-
84924561760
-
Hepatitis C virus RNA functionally sequesters miR-122
-
10.1016/j.cell.2015.02.025 1:CAS:528:DC%2BC2MXks1agtb4%3D 25768906
-
Luna JM, Scheel TK, Danino T, Shaw KS, Mele A, Fak JJ, et al. Hepatitis C virus RNA functionally sequesters miR-122. Cell. 2015;160:1099-110.
-
(2015)
Cell
, vol.160
, pp. 1099-1110
-
-
Luna, J.M.1
Scheel, T.K.2
Danino, T.3
Shaw, K.S.4
Mele, A.5
Fak, J.J.6
-
57
-
-
84906931020
-
Construction and investigation of breast-cancer-specific ceRNA network based on the mRNA and miRNA expression data
-
10.1049/iet-syb.2013.0025 25014376
-
Zhou X, Liu J, Wang W. Construction and investigation of breast-cancer-specific ceRNA network based on the mRNA and miRNA expression data. IET Syst Biol. 2014;8:96-103.
-
(2014)
IET Syst Biol
, vol.8
, pp. 96-103
-
-
Zhou, X.1
Liu, J.2
Wang, W.3
-
58
-
-
84925985368
-
MicroRNA-mediated networks underlie immune response regulation in papillary thyroid carcinoma
-
10.1038/srep06495 4178297 1:CAS:528:DC%2BC2MXksVynsLk%3D 25263162
-
Huang CT, Oyang YJ, Huang HC, Juan HF. MicroRNA-mediated networks underlie immune response regulation in papillary thyroid carcinoma. Sci Rep. 2014;4:6495.
-
(2014)
Sci Rep
, vol.4
, pp. 6495
-
-
Huang, C.T.1
Oyang, Y.J.2
Huang, H.C.3
Juan, H.F.4
-
59
-
-
84904272774
-
Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer
-
10.1186/1752-0509-8-83 4113672 25033876
-
Paci P, Colombo T, Farina L. Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer. BMC Syst Biol. 2014;8:83.
-
(2014)
BMC Syst Biol
, vol.8
, pp. 83
-
-
Paci, P.1
Colombo, T.2
Farina, L.3
-
60
-
-
84906241067
-
Long noncoding RNA associated -competing endogenous RNAs in gastric cancer
-
4133709 1:CAS:528:DC%2BC2MXktlOnt7k%3D 25124853
-
Xia T, Liao Q, Jiang X, Shao Y, Xiao B, Xi Y, et al. Long noncoding RNA associated -competing endogenous RNAs in gastric cancer. Sci Rep. 2014;4:6088.
-
(2014)
Sci Rep
, vol.4
, pp. 6088
-
-
Xia, T.1
Liao, Q.2
Jiang, X.3
Shao, Y.4
Xiao, B.5
Xi, Y.6
-
61
-
-
84903200695
-
3'UTR shortening identifies high-risk cancers with targeted dysregulation of the ceRNA network
-
4066258 1:CAS:528:DC%2BC2MXksVyqsLY%3D 24953077
-
Li L, Wang D, Xue M, Mi X, Liang Y, Wang P. 3'UTR shortening identifies high-risk cancers with targeted dysregulation of the ceRNA network. Sci Rep. 2014;4:5406.
-
(2014)
Sci Rep
, vol.4
, pp. 5406
-
-
Li, L.1
Wang, D.2
Xue, M.3
Mi, X.4
Liang, Y.5
Wang, P.6
-
62
-
-
80052451056
-
Experimental strategies for microRNA target identification
-
10.1093/nar/gkr330 3167600 1:CAS:528:DC%2BC3MXhtFehtr3M 21652644
-
Thomson DW, Bracken CP, Goodall GJ. Experimental strategies for microRNA target identification. Nucleic Acids Res. 2011;39:6845-53.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6845-6853
-
-
Thomson, D.W.1
Bracken, C.P.2
Goodall, G.J.3
-
63
-
-
84891818924
-
StarBase v2.0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
-
10.1093/nar/gkt1248 3964941 1:CAS:528:DC%2BC2cXos1ar 24297251
-
Li JH, Liu S, Zhou H, Qu LH, Yang JH. starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res. 2014;42(Database issue):D92-7.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.DATABASE ISSUE
, pp. 92-97
-
-
Li, J.H.1
Liu, S.2
Zhou, H.3
Qu, L.H.4
Yang, J.H.5
-
64
-
-
33645311203
-
Molecular biology: RNA lost in translation
-
10.1038/440425a 1:CAS:528:DC%2BD28Xis1Omurk%3D 16554791
-
Tollervey D. Molecular biology: RNA lost in translation. Nature. 2006;440:425-6.
-
(2006)
Nature
, vol.440
, pp. 425-426
-
-
Tollervey, D.1
-
65
-
-
77956411754
-
Mining mammalian transcript data for functional long non-coding RNAs
-
10.1371/journal.pone.0010316 2859052 20428234
-
Khachane AN, Harrison PM. Mining mammalian transcript data for functional long non-coding RNAs. PLoS One. 2010;5:e10316.
-
(2010)
PLoS One.
, vol.5
, pp. 10316
-
-
Khachane, A.N.1
Harrison, P.M.2
-
66
-
-
68149165414
-
HuR recruits let-7/RISC to repress c-Myc expression
-
10.1101/gad.1812509 2720259 1:CAS:528:DC%2BD1MXps1ymt7c%3D 19574298
-
Kim HH, Kuwano Y, Srikantan S, Lee EK, Martindale JL, Gorospe M. HuR recruits let-7/RISC to repress c-Myc expression. Genes Dev. 2009;23:1743-8.
-
(2009)
Genes Dev
, vol.23
, pp. 1743-1748
-
-
Kim, H.H.1
Kuwano, Y.2
Srikantan, S.3
Lee, E.K.4
Martindale, J.L.5
Gorospe, M.6
-
67
-
-
80052041185
-
MicroRNA regulation by RNA-binding proteins and its implications for cancer
-
10.1038/nrc3107 21822212
-
van Kouwenhove M, Kedde M, Agami R. MicroRNA regulation by RNA-binding proteins and its implications for cancer. Nat Rev Cancer. 2011;11:644-56.
-
(2011)
Nat Rev Cancer
, vol.11
, pp. 644-656
-
-
Van Kouwenhove, M.1
Kedde, M.2
Agami, R.3
-
68
-
-
84905845373
-
MicroRNAs and ceRNAs: Therapeutic implications of RNA networks
-
10.1517/14712598.2014.920812 1:CAS:528:DC%2BC2cXhtlansrnF 24941322
-
Giza DE, Vasilescu C, Calin GA. MicroRNAs and ceRNAs: therapeutic implications of RNA networks. Expert Opin Biol Ther. 2014;14:1285-93.
-
(2014)
Expert Opin Biol Ther
, vol.14
, pp. 1285-1293
-
-
Giza, D.E.1
Vasilescu, C.2
Calin, G.A.3
-
69
-
-
84893358848
-
Single nucleotide polymorphisms in microRNA binding sites of oncogenes: Implications in cancer and pharmacogenomics
-
10.1089/omi.2013.0098 3920756 1:CAS:528:DC%2BC2cXhsVCitLk%3D 24286505
-
Manikandan M, Munirajan AK. Single nucleotide polymorphisms in microRNA binding sites of oncogenes: implications in cancer and pharmacogenomics. OMICS. 2014;18:142-54.
-
(2014)
OMICS
, vol.18
, pp. 142-154
-
-
Manikandan, M.1
Munirajan, A.K.2
-
70
-
-
33847317017
-
Redirection of silencing targets by adenosine-to-inosine editing of miRNAs
-
10.1126/science.1138050 2953418 1:CAS:528:DC%2BD2sXhvFWrs70%3D 17322061
-
Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG, Nishikura K. Redirection of silencing targets by adenosine-to-inosine editing of miRNAs. Science. 2007;315:1137-40.
-
(2007)
Science
, vol.315
, pp. 1137-1140
-
-
Kawahara, Y.1
Zinshteyn, B.2
Sethupathy, P.3
Iizasa, H.4
Hatzigeorgiou, A.G.5
Nishikura, K.6
-
71
-
-
84924424616
-
MicroRNA silencing for cancer therapy targeted to the tumour microenvironment
-
10.1038/nature13905 1:CAS:528:DC%2BC2cXhvFGltLrJ 25409146
-
Cheng CJ, Bahal R, Babar IA, Pincus Z, Barrera F, Liu C, et al. MicroRNA silencing for cancer therapy targeted to the tumour microenvironment. Nature. 2015;518:107-10.
-
(2015)
Nature
, vol.518
, pp. 107-110
-
-
Cheng, C.J.1
Bahal, R.2
Babar, I.A.3
Pincus, Z.4
Barrera, F.5
Liu, C.6
-
72
-
-
84863083842
-
The non-coding 3?UTR of CD44 induces metastasis by regulating extracellular matrix functions
-
10.1242/jcs.100818 1:CAS:528:DC%2BC38XhtVGltrrE 22637644
-
Rutnam ZJ, Yang BB. The non-coding 3?UTR of CD44 induces metastasis by regulating extracellular matrix functions. J Cell Sci. 2012;125:2075-85.
-
(2012)
J Cell Sci
, vol.125
, pp. 2075-2085
-
-
Rutnam, Z.J.1
Yang, B.B.2
-
73
-
-
84906271393
-
FOXO1 3'UTR functions as a ceRNA in repressing the metastases of breast cancer cells via regulating miRNA activity
-
10.1016/j.febslet.2014.07.003 1:CAS:528:DC%2BC2cXhtFyms7fI 25017439
-
Yang J, Li T, Gao C, Lv X, Liu K, Song H, et al. FOXO1 3'UTR functions as a ceRNA in repressing the metastases of breast cancer cells via regulating miRNA activity. FEBS Lett. 2014;588:3218-324.
-
(2014)
FEBS Lett
, vol.588
, pp. 3218-3324
-
-
Yang, J.1
Li, T.2
Gao, C.3
Lv, X.4
Liu, K.5
Song, H.6
-
74
-
-
84874583945
-
Versican 3'-untranslated region (3'-UTR) functions as a ceRNA in inducing the development of hepatocellular carcinoma by regulating miRNA activity
-
10.1096/fj.12-220905 1:CAS:528:DC%2BC3sXjvVOqtrw%3D 23180826
-
Fang L, Du WW, Yang X, Chen K, Ghanekar A, Levy G, et al. Versican 3'-untranslated region (3'-UTR) functions as a ceRNA in inducing the development of hepatocellular carcinoma by regulating miRNA activity. FASEB J. 2013;27:907-19.
-
(2013)
FASEB J
, vol.27
, pp. 907-919
-
-
Fang, L.1
Du, W.W.2
Yang, X.3
Chen, K.4
Ghanekar, A.5
Levy, G.6
-
75
-
-
84873852453
-
Hepatitis B virus mRNA-mediated miR-122 inhibition upregulates PTTG1-binding protein, which promotes hepatocellular carcinoma tumor growth and cell invasion
-
10.1128/JVI.02831-12 3571498 1:CAS:528:DC%2BC3sXlt1Sksro%3D 23221562
-
Li C, Wang Y, Wang S, Wu B, Hao J, Fan H, et al. Hepatitis B virus mRNA-mediated miR-122 inhibition upregulates PTTG1-binding protein, which promotes hepatocellular carcinoma tumor growth and cell invasion. J Virol. 2013;87:2193-205.
-
(2013)
J Virol
, vol.87
, pp. 2193-2205
-
-
Li, C.1
Wang, Y.2
Wang, S.3
Wu, B.4
Hao, J.5
Fan, H.6
-
76
-
-
84906789721
-
Post-transcriptional regulation of the tumor suppressor miR-139-5p and a network of miR-139-5p-mediated mRNA interactions in colorectal cancer
-
10.1111/febs.12880 1:CAS:528:DC%2BC2cXhtlKksr3L 24942287
-
Shen K, Mao R, Ma L, Li Y, Qiu Y, Cui D, et al. Post-transcriptional regulation of the tumor suppressor miR-139-5p and a network of miR-139-5p-mediated mRNA interactions in colorectal cancer. FEBS J. 2014;281:3609-24.
-
(2014)
FEBS J
, vol.281
, pp. 3609-3624
-
-
Shen, K.1
Mao, R.2
Ma, L.3
Li, Y.4
Qiu, Y.5
Cui, D.6
|