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Volumn 589, Issue 20, 2015, Pages 3005-3013

On the demultiplexing of chromosome capture conformation data

Author keywords

Deconvolution; Demultiplexing; Genomic contact maps; Polymer models of chromosomes; Restrained based methods

Indexed keywords

POLYMER;

EID: 84943357258     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2015.05.049     Document Type: Review
Times cited : (20)

References (67)
  • 1
    • 0037083376 scopus 로고    scopus 로고
    • Capturing chromosome conformation
    • J. Dekker, K. Rippe, M. Dekker, and N. Kleckner Capturing chromosome conformation Science 295 5558 2002 1306 1311
    • (2002) Science , vol.295 , Issue.5558 , pp. 1306-1311
    • Dekker, J.1    Rippe, K.2    Dekker, M.3    Kleckner, N.4
  • 2
    • 84855297335 scopus 로고    scopus 로고
    • A decade of 3C technologies: insights into nuclear organization
    • E. De Wit, and W. De Laat A decade of 3C technologies: insights into nuclear organization Genes Dev. 26 1 2012 11 24
    • (2012) Genes Dev. , vol.26 , Issue.1 , pp. 11-24
    • De Wit, E.1    De Laat, W.2
  • 3
    • 84919949716 scopus 로고    scopus 로고
    • A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
    • S.S.P. Rao, M.H. Huntley, N.C. Durand, E.K. Stamenova, I.D. Bochkov, J.T. Robinson, and et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping Cell 159 7 2014 1665 1680
    • (2014) Cell , vol.159 , Issue.7 , pp. 1665-1680
    • Rao, S.S.P.1    Huntley, M.H.2    Durand, N.C.3    Stamenova, E.K.4    Bochkov, I.D.5    Robinson, J.T.6
  • 4
    • 67549119096 scopus 로고    scopus 로고
    • CTCF: master weaver of the genome
    • J.E. Phillips, and V.G. Corces CTCF: master weaver of the genome Cell 137 7 2009 1194 1211
    • (2009) Cell , vol.137 , Issue.7 , pp. 1194-1211
    • Phillips, J.E.1    Corces, V.G.2
  • 5
    • 84899415536 scopus 로고    scopus 로고
    • CTCF: an architectural protein bridging genome topology and function
    • C.-T. Ong, and V.G. Corces CTCF: an architectural protein bridging genome topology and function Nat. Rev. Genet. 2014
    • (2014) Nat. Rev. Genet.
    • Ong, C.-T.1    Corces, V.G.2
  • 6
    • 84878188440 scopus 로고    scopus 로고
    • Chromatin insulators: linking genome organization to cellular function
    • J.E. Phillips-Cremins, and V.G. Corces Chromatin insulators: linking genome organization to cellular function Mol. Cell 50 4 2013 461 474
    • (2013) Mol. Cell , vol.50 , Issue.4 , pp. 461-474
    • Phillips-Cremins, J.E.1    Corces, V.G.2
  • 7
    • 84856747483 scopus 로고    scopus 로고
    • Three-dimensional folding and functional organization principles of the Drosophila genome
    • T. Sexton, E. Yaffe, E. Kenigsberg, F. Bantignies, B. Leblanc, M. Hoichman, and et al. Three-dimensional folding and functional organization principles of the Drosophila genome Cell 148 3 2012 458 472
    • (2012) Cell , vol.148 , Issue.3 , pp. 458-472
    • Sexton, T.1    Yaffe, E.2    Kenigsberg, E.3    Bantignies, F.4    Leblanc, B.5    Hoichman, M.6
  • 8
    • 84861100147 scopus 로고    scopus 로고
    • Spatial partitioning of the regulatory landscape of the X-inactivation centre
    • E.P. Nora, B.R. Lajoie, E.G. Schulz, L. Giorgetti, I. Okamoto, N. Servant, and et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre Nature 485 7398 2012 381 385
    • (2012) Nature , vol.485 , Issue.7398 , pp. 381-385
    • Nora, E.P.1    Lajoie, B.R.2    Schulz, E.G.3    Giorgetti, L.4    Okamoto, I.5    Servant, N.6
  • 9
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • J.R. Dixon, S. Selvaraj, F. Yue, A. Kim, Y. Li, Y. Shen, and et al. Topological domains in mammalian genomes identified by analysis of chromatin interactions Nature 485 7 2012 376 380
    • (2012) Nature , vol.485 , Issue.7 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6
  • 10
    • 84869003748 scopus 로고    scopus 로고
    • Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains
    • C. Hou, L. Li, Z.S. Qin, and V.G. Corces Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains Mol. Cell 48 3 2012 471 484
    • (2012) Mol. Cell , vol.48 , Issue.3 , pp. 471-484
    • Hou, C.1    Li, L.2    Qin, Z.S.3    Corces, V.G.4
  • 12
    • 84924533047 scopus 로고    scopus 로고
    • Comparative HiC reveals that CTCF underlies evolution of chromosomal domain architecture
    • M. Vietri Rudan, C. Barrington, S. Henderson, C. Ernst, D.T. Odom, A. Tanay, and S. Hadjur Comparative HiC reveals that CTCF underlies evolution of chromosomal domain architecture Cell Rep. 10 8 2015 1297 1309
    • (2015) Cell Rep. , vol.10 , Issue.8 , pp. 1297-1309
    • Vietri Rudan, M.1    Barrington, C.2    Henderson, S.3    Ernst, C.4    Odom, D.T.5    Tanay, A.6    Hadjur, S.7
  • 13
    • 84902212007 scopus 로고    scopus 로고
    • The 3D genome in transcriptional regulation and pluripotency
    • D.U. Gorkin, D. Leung, and B. Ren The 3D genome in transcriptional regulation and pluripotency Cell Stem Cell 14 6 2014 762 775
    • (2014) Cell Stem Cell , vol.14 , Issue.6 , pp. 762-775
    • Gorkin, D.U.1    Leung, D.2    Ren, B.3
  • 14
    • 84875127327 scopus 로고    scopus 로고
    • CTCF and cohesin: linking gene regulatory elements with their targets
    • M. Merkenschlager, and D.T. Odom CTCF and cohesin: linking gene regulatory elements with their targets Cell 152 6 2013 1285 1297
    • (2013) Cell , vol.152 , Issue.6 , pp. 1285-1297
    • Merkenschlager, M.1    Odom, D.T.2
  • 15
    • 33846283384 scopus 로고    scopus 로고
    • Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions
    • C. Lanctôt, T. Cheutin, M. Cremer, G. Cavalli, and T. Cremer Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions Nat. Rev. Genet. 8 2 2007 104 115
    • (2007) Nat. Rev. Genet. , vol.8 , Issue.2 , pp. 104-115
    • Lanctôt, C.1    Cheutin, T.2    Cremer, M.3    Cavalli, G.4    Cremer, T.5
  • 16
    • 84875200698 scopus 로고    scopus 로고
    • Functional implications of genome topology
    • G. Cavalli, and T. Misteli Functional implications of genome topology Nat. Struct. Mol. Biol. 20 3 2013 290 299
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , Issue.3 , pp. 290-299
    • Cavalli, G.1    Misteli, T.2
  • 17
    • 84904567038 scopus 로고    scopus 로고
    • 3D trajectories adopted by coding and regulatory DNA elements: first-passage times for genomic interactions
    • J.S. Lucas, Y. Zhang, O.K. Dudko, and C. Murre 3D trajectories adopted by coding and regulatory DNA elements: first-passage times for genomic interactions Cell 158 2 2014 339 352
    • (2014) Cell , vol.158 , Issue.2 , pp. 339-352
    • Lucas, J.S.1    Zhang, Y.2    Dudko, O.K.3    Murre, C.4
  • 18
    • 84904552527 scopus 로고    scopus 로고
    • The contraction of time and space in remote chromosomal interactions
    • M. Levine The contraction of time and space in remote chromosomal interactions Cell 158 2 2014 243 244
    • (2014) Cell , vol.158 , Issue.2 , pp. 243-244
    • Levine, M.1
  • 19
    • 41349089522 scopus 로고    scopus 로고
    • Gene regulation in the third dimension
    • J. Dekker Gene regulation in the third dimension Science 319 5871 2008 1793 1794
    • (2008) Science , vol.319 , Issue.5871 , pp. 1793-1794
    • Dekker, J.1
  • 20
    • 84863540362 scopus 로고    scopus 로고
    • Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
    • H. Tjong, K. Gong, L. Chen, and F. Alber Physical tethering and volume exclusion determine higher-order genome organization in budding yeast Genome Res. 22 7 2012 1295 1305
    • (2012) Genome Res. , vol.22 , Issue.7 , pp. 1295-1305
    • Tjong, H.1    Gong, K.2    Chen, L.3    Alber, F.4
  • 22
    • 84870568600 scopus 로고    scopus 로고
    • CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus
    • I. Junier, R.K. Dale, C. Hou, F. Képès, and A. Dean CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus Nucleic Acids Res. 40 16 2012 7718 7727
    • (2012) Nucleic Acids Res. , vol.40 , Issue.16 , pp. 7718-7727
    • Junier, I.1    Dale, R.K.2    Hou, C.3    Képès, F.4    Dean, A.5
  • 23
    • 84871774401 scopus 로고    scopus 로고
    • Recovering ensembles of chromatin conformations from contact probabilities
    • D. Meluzzi, and G. Arya Recovering ensembles of chromatin conformations from contact probabilities Nucleic Acids Res. 41 1 2013 63 75
    • (2013) Nucleic Acids Res. , vol.41 , Issue.1 , pp. 63-75
    • Meluzzi, D.1    Arya, G.2
  • 24
    • 84900297485 scopus 로고    scopus 로고
    • Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription
    • L. Giorgetti, R. Galupa, E.P. Nora, T. Piolot, F. Lam, J. Dekker, and et al. Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription Cell 157 4 2014 950 963
    • (2014) Cell , vol.157 , Issue.4 , pp. 950-963
    • Giorgetti, L.1    Galupa, R.2    Nora, E.P.3    Piolot, T.4    Lam, F.5    Dekker, J.6
  • 25
    • 84907512608 scopus 로고    scopus 로고
    • Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
    • F. Le Dily, D. Baù, A. Pohl, G.P. Vicent, F. Serra, D. Soronellas, and et al. Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation Genes Dev. 28 19 2014 2151 2162
    • (2014) Genes Dev. , vol.28 , Issue.19 , pp. 2151-2162
    • Le Dily, F.1    Baù, D.2    Pohl, A.3    Vicent, G.P.4    Serra, F.5    Soronellas, D.6
  • 27
    • 84886853624 scopus 로고    scopus 로고
    • Topology of mammalian developmental enhancers and their regulatory landscapes
    • W. De Laat, and D. Duboule Topology of mammalian developmental enhancers and their regulatory landscapes Nature 502 7 2013 499 506
    • (2013) Nature , vol.502 , Issue.7 , pp. 499-506
    • De Laat, W.1    Duboule, D.2
  • 28
    • 84878754528 scopus 로고    scopus 로고
    • A switch between topological domains underlies HoxD genes collinearity in mouse limbs
    • G. Andrey, T. Montavon, B. Mascrez, F. Gonzalez, D. Noordermeer, M. Leleu, and et al. A switch between topological domains underlies HoxD genes collinearity in mouse limbs Science 340 6137 2013 1234167
    • (2013) Science , vol.340 , Issue.6137 , pp. 1234167
    • Andrey, G.1    Montavon, T.2    Mascrez, B.3    Gonzalez, F.4    Noordermeer, D.5    Leleu, M.6
  • 29
    • 84899894562 scopus 로고    scopus 로고
    • Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci
    • D. Noordermeer, M. Leleu, P. Schorderet, E. Joye, F. Chabaud, and D. Duboule Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci eLife 3 2014 e02557
    • (2014) eLife , vol.3
    • Noordermeer, D.1    Leleu, M.2    Schorderet, P.3    Joye, E.4    Chabaud, F.5    Duboule, D.6
  • 30
    • 84885617426 scopus 로고    scopus 로고
    • Single-cell HiC reveals cell-to-cell variability in chromosome structure
    • T. Nagano, Y. Lubling, T.J. Stevens, S. Schoenfelder, E. Yaffe, W. Dean, and et al. Single-cell HiC reveals cell-to-cell variability in chromosome structure Nature 502 7 2013 59 64
    • (2013) Nature , vol.502 , Issue.7 , pp. 59-64
    • Nagano, T.1    Lubling, Y.2    Stevens, T.J.3    Schoenfelder, S.4    Yaffe, E.5    Dean, W.6
  • 31
    • 80054984337 scopus 로고    scopus 로고
    • Probabilistic modeling of HiC contact maps eliminates systematic biases to characterize global chromosomal architecture
    • E. Yaffe, and A. Tanay Probabilistic modeling of HiC contact maps eliminates systematic biases to characterize global chromosomal architecture Nat. Genet. 43 11 2011 1059 1065
    • (2011) Nat. Genet. , vol.43 , Issue.11 , pp. 1059-1065
    • Yaffe, E.1    Tanay, A.2
  • 32
    • 84900311382 scopus 로고    scopus 로고
    • Understanding spatial organizations of chromosomes via statistical analysis of HiC data
    • M. Hu, K. Deng, Z. Qin, and J.S. Liu Understanding spatial organizations of chromosomes via statistical analysis of HiC data Quant. Biol. 2013
    • (2013) Quant. Biol.
    • Hu, M.1    Deng, K.2    Qin, Z.3    Liu, J.S.4
  • 34
    • 79960948298 scopus 로고    scopus 로고
    • Bridging the resolution gap in structural modeling of 3D genome organization
    • M.A. Marti-Renom, and L.A. Mirny Bridging the resolution gap in structural modeling of 3D genome organization PLoS Comput. Biol. 7 7 2011 e1002125
    • (2011) PLoS Comput. Biol. , vol.7 , Issue.7
    • Marti-Renom, M.A.1    Mirny, L.A.2
  • 35
    • 70349873824 scopus 로고    scopus 로고
    • Comprehensive mapping of long-range interactions reveals folding principles of the human genome
    • E. Lieberman-Aiden, N.L. van Berkum, L. Williams, M. Imakaev, T. Ragoczy, A. Telling, and et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome Science 326 5950 2009 289 293
    • (2009) Science , vol.326 , Issue.5950 , pp. 289-293
    • Lieberman-Aiden, E.1    Van Berkum, N.L.2    Williams, L.3    Imakaev, M.4    Ragoczy, T.5    Telling, A.6
  • 36
    • 78650994865 scopus 로고    scopus 로고
    • The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules
    • D. Baù, A. Sanyal, B.R. Lajoie, E. Capriotti, M. Byron, J.B. Lawrence, and et al. The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules Nat. Struct. Mol. Biol. 18 1 2011 107 114
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , Issue.1 , pp. 107-114
    • Baù, D.1    Sanyal, A.2    Lajoie, B.R.3    Capriotti, E.4    Byron, M.5    Lawrence, J.B.6
  • 37
    • 80054875965 scopus 로고    scopus 로고
    • Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling
    • M. Rousseau, J. Fraser, M.A. Ferraiuolo, J. Dostie, and M. Blanchette Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling BMC Bioinformatics 12 1 2011 414
    • (2011) BMC Bioinformatics , vol.12 , Issue.1 , pp. 414
    • Rousseau, M.1    Fraser, J.2    Ferraiuolo, M.A.3    Dostie, J.4    Blanchette, M.5
  • 38
    • 84900465317 scopus 로고    scopus 로고
    • Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
    • F. Ay, E.M. Bunnik, N. Varoquaux, S.M. Bol, J. Prudhomme, J.-P. Vert, and et al. Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression Genome Res. 24 6 2014 974 988
    • (2014) Genome Res. , vol.24 , Issue.6 , pp. 974-988
    • Ay, F.1    Bunnik, E.M.2    Varoquaux, N.3    Bol, S.M.4    Prudhomme, J.5    Vert, J.-P.6
  • 40
    • 84862917808 scopus 로고    scopus 로고
    • Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
    • R. Kalhor, H. Tjong, N. Jayathilaka, F. Alber, and L. Chen Genome architectures revealed by tethered chromosome conformation capture and population-based modeling Nat. Biotechnol. 30 1 2012 90 98
    • (2012) Nat. Biotechnol. , vol.30 , Issue.1 , pp. 90-98
    • Kalhor, R.1    Tjong, H.2    Jayathilaka, N.3    Alber, F.4    Chen, L.5
  • 42
    • 84956136196 scopus 로고
    • Crumpled globule model of the three-dimensional structure of DNA
    • A. Grosberg, Y. Rabin, S. Havlin, and A. Neer Crumpled globule model of the three-dimensional structure of DNA EPL 23 5 1993 373 378
    • (1993) EPL , vol.23 , Issue.5 , pp. 373-378
    • Grosberg, A.1    Rabin, Y.2    Havlin, S.3    Neer, A.4
  • 44
    • 84924870007 scopus 로고    scopus 로고
    • Modelling epigenome folding: formation and dynamics of topologically associated chromatin domains
    • D. Jost, P. Carrivain, G. Cavalli, and C. Vaillant Modelling epigenome folding: formation and dynamics of topologically associated chromatin domains Nucleic Acids Res. 42 15 2014 9553 9561
    • (2014) Nucleic Acids Res. , vol.42 , Issue.15 , pp. 9553-9561
    • Jost, D.1    Carrivain, P.2    Cavalli, G.3    Vaillant, C.4
  • 46
    • 84908352990 scopus 로고    scopus 로고
    • Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modeling
    • M. Tark-Dame, H. Jerabek, E.M.M. Manders, D.W. Heermann, and R. van Driel Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modeling PLoS Comput. Biol. 10 10 2014 e1003877
    • (2014) PLoS Comput. Biol. , vol.10 , Issue.10
    • Tark-Dame, M.1    Jerabek, H.2    Manders, E.M.M.3    Heermann, D.W.4    Van Driel, R.5
  • 47
    • 84867842663 scopus 로고    scopus 로고
    • A predictive computational model of the dynamic 3D interphase yeast nucleus
    • H. Wong, H. Marie-Nelly, S. Herbert, P. Carrivain, H. Blanc, R. Koszul, and et al. A predictive computational model of the dynamic 3D interphase yeast nucleus Curr. Biol. 22 20 2012 1881 1890
    • (2012) Curr. Biol. , vol.22 , Issue.20 , pp. 1881-1890
    • Wong, H.1    Marie-Nelly, H.2    Herbert, S.3    Carrivain, P.4    Blanc, H.5    Koszul, R.6
  • 48
    • 37749046912 scopus 로고    scopus 로고
    • Experimental parameterization of an energy function for the simulation of unfolded proteins
    • A.B. Norgaard, J. Ferkinghoff-Borg, and K. Lindorff-Larsen Experimental parameterization of an energy function for the simulation of unfolded proteins Biophys. J. 94 1 2008 182 192
    • (2008) Biophys. J. , vol.94 , Issue.1 , pp. 182-192
    • Norgaard, A.B.1    Ferkinghoff-Borg, J.2    Lindorff-Larsen, K.3
  • 49
    • 77649198707 scopus 로고    scopus 로고
    • Spatial and topological organization of DNA chains induced by gene co-localization
    • I. Junier, O. Martin, and F. Képès Spatial and topological organization of DNA chains induced by gene co-localization PLoS Comput. Biol. 6 2 2010 e1000678
    • (2010) PLoS Comput. Biol. , vol.6 , Issue.2
    • Junier, I.1    Martin, O.2    Képès, F.3
  • 50
    • 84892715701 scopus 로고    scopus 로고
    • Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs
    • S. Berlivet, D. Paquette, A. Dumouchel, D. Langlais, J. Dostie, and M. Kmita Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs PLoS Genet. 9 12 2013 e1004018
    • (2013) PLoS Genet. , vol.9 , Issue.12
    • Berlivet, S.1    Paquette, D.2    Dumouchel, A.3    Langlais, D.4    Dostie, J.5    Kmita, M.6
  • 51
    • 84878860751 scopus 로고    scopus 로고
    • Architectural protein subclasses shape 3D organization of genomes during lineage commitment
    • J.E. Phillips-Cremins, M.E.G. Sauria, A. Sanyal, T.I. Gerasimova, B.R. Lajoie, J.S.K. Bell, and et al. Architectural protein subclasses shape 3D organization of genomes during lineage commitment Cell 153 6 2013 1281 1295
    • (2013) Cell , vol.153 , Issue.6 , pp. 1281-1295
    • Phillips-Cremins, J.E.1    Sauria, M.E.G.2    Sanyal, A.3    Gerasimova, T.I.4    Lajoie, B.R.5    Bell, J.S.K.6
  • 52
    • 0035509641 scopus 로고    scopus 로고
    • Chromatin: a tunable spring at work inside chromosomes
    • E. Ben-Haïm, A. Lesne, and J.-M. Victor Chromatin: a tunable spring at work inside chromosomes Phys. Rev. E 64 5 2001 51921
    • (2001) Phys. Rev. E , vol.64 , Issue.5 , pp. 51921
    • Ben-Haïm, E.1    Lesne, A.2    Victor, J.-M.3
  • 53
    • 84887460979 scopus 로고    scopus 로고
    • High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome
    • H. Hajjoul, J. Mathon, H. Ranchon, I. Goiffon, J. Mozziconacci, B. Albert, and et al. High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome Genome Res. 23 11 2013 1829 1838
    • (2013) Genome Res. , vol.23 , Issue.11 , pp. 1829-1838
    • Hajjoul, H.1    Mathon, J.2    Ranchon, H.3    Goiffon, I.4    Mozziconacci, J.5    Albert, B.6
  • 54
    • 77957776228 scopus 로고    scopus 로고
    • Systematic protein location mapping reveals five principal chromatin types in Drosophila cells
    • G.J. Filion, J.G. van Bemmel, U. Braunschweig, W. Talhout, J. Kind, L.D. Ward, and et al. Systematic protein location mapping reveals five principal chromatin types in Drosophila cells Cell 143 2 2010 212 224
    • (2010) Cell , vol.143 , Issue.2 , pp. 212-224
    • Filion, G.J.1    Van Bemmel, J.G.2    Braunschweig, U.3    Talhout, W.4    Kind, J.5    Ward, L.D.6
  • 55
    • 79956066320 scopus 로고    scopus 로고
    • Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
    • F. Roudier, I. Ahmed, C. Bérard, A. Sarazin, T. Mary-Huard, S. Cortijo, and et al. Integrative epigenomic mapping defines four main chromatin states in Arabidopsis EMBO J. 30 10 2011 1928 1938
    • (2011) EMBO J. , vol.30 , Issue.10 , pp. 1928-1938
    • Roudier, F.1    Ahmed, I.2    Bérard, C.3    Sarazin, A.4    Mary-Huard, T.5    Cortijo, S.6
  • 57
    • 84901838628 scopus 로고    scopus 로고
    • Statistical confidence estimation for HiC data reveals regulatory chromatin contacts
    • F. Ay, T.L. Bailey, and W.S. Noble Statistical confidence estimation for HiC data reveals regulatory chromatin contacts Genome Res. 24 6 2014 999 1011
    • (2014) Genome Res. , vol.24 , Issue.6 , pp. 999-1011
    • Ay, F.1    Bailey, T.L.2    Noble, W.S.3
  • 58
    • 84921766204 scopus 로고    scopus 로고
    • High-resolution 3D DNA FISH using plasmid probes and computational correction of optical aberrations to study chromatin structure at the sub-megabase scale
    • Chapter 3
    • L. Giorgetti, T. Piolot, and E. Heard High-resolution 3D DNA FISH using plasmid probes and computational correction of optical aberrations to study chromatin structure at the sub-megabase scale Methods Mol. Biol. 1262 Chapter 3 2015 37 53
    • (2015) Methods Mol. Biol. , vol.1262 , pp. 37-53
    • Giorgetti, L.1    Piolot, T.2    Heard, E.3
  • 59
    • 84918510740 scopus 로고    scopus 로고
    • Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization
    • I. Williamson, S. Berlivet, R. Eskeland, S. Boyle, R.S. Illingworth, D. Paquette, and et al. Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization Genes Dev. 28 24 2014 2778 2791
    • (2014) Genes Dev. , vol.28 , Issue.24 , pp. 2778-2791
    • Williamson, I.1    Berlivet, S.2    Eskeland, R.3    Boyle, S.4    Illingworth, R.S.5    Paquette, D.6
  • 60
    • 34648826792 scopus 로고    scopus 로고
    • Multicolor super-resolution imaging with photo-switchable fluorescent probes
    • M. Bates, B. Huang, G.T. Dempsey, and X. Zhuang Multicolor super-resolution imaging with photo-switchable fluorescent probes Science 317 5845 2007 1749 1753
    • (2007) Science , vol.317 , Issue.5845 , pp. 1749-1753
    • Bates, M.1    Huang, B.2    Dempsey, G.T.3    Zhuang, X.4
  • 62
    • 78650512639 scopus 로고    scopus 로고
    • Breaking the diffraction barrier: super-resolution imaging of cells
    • B. Huang, H. Babcock, and X. Zhuang Breaking the diffraction barrier: super-resolution imaging of cells Cell 143 7 2010 1047 1058
    • (2010) Cell , vol.143 , Issue.7 , pp. 1047-1058
    • Huang, B.1    Babcock, H.2    Zhuang, X.3
  • 63
    • 84859845974 scopus 로고    scopus 로고
    • The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives for studies of nuclear architecture
    • Y. Markaki, D. Smeets, S. Fiedler, V.J. Schmid, L. Schermelleh, T. Cremer, and M. Cremer The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives for studies of nuclear architecture BioEssays 34 5 2012 412 426
    • (2012) BioEssays , vol.34 , Issue.5 , pp. 412-426
    • Markaki, Y.1    Smeets, D.2    Fiedler, S.3    Schmid, V.J.4    Schermelleh, L.5    Cremer, T.6    Cremer, M.7
  • 64
    • 84897424193 scopus 로고    scopus 로고
    • DNA dynamics during early double-strand break processing revealed by non-intrusive imaging of living cells
    • H. Saad, F. Gallardo, M. Dalvai, N. Tanguy-le-Gac, D. Lane, and K. Bystricky DNA dynamics during early double-strand break processing revealed by non-intrusive imaging of living cells PLoS Genet. 10 3 2014 e1004187
    • (2014) PLoS Genet. , vol.10 , Issue.3
    • Saad, H.1    Gallardo, F.2    Dalvai, M.3    Tanguy-Le-Gac, N.4    Lane, D.5    Bystricky, K.6
  • 65
    • 84894063115 scopus 로고    scopus 로고
    • Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system
    • B. Chen, L.A. Gilbert, B.A. Cimini, J. Schnitzbauer, W. Zhang, G.-W. Li, and et al. Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system Cell 155 7 2013 1479 1491
    • (2013) Cell , vol.155 , Issue.7 , pp. 1479-1491
    • Chen, B.1    Gilbert, L.A.2    Cimini, B.A.3    Schnitzbauer, J.4    Zhang, W.5    Li, G.-W.6
  • 67
    • 84913594397 scopus 로고    scopus 로고
    • The new frontier of genome engineering with CRISPR-Cas9
    • J.A. Doudna, and E. Charpentier The new frontier of genome engineering with CRISPR-Cas9 Science 346 6213 2014 1258096
    • (2014) Science , vol.346 , Issue.6213 , pp. 1258096
    • Doudna, J.A.1    Charpentier, E.2


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