-
1
-
-
0037083376
-
Capturing chromosome conformation
-
J. Dekker, K. Rippe, M. Dekker, and N. Kleckner Capturing chromosome conformation Science 295 5558 2002 1306 1311
-
(2002)
Science
, vol.295
, Issue.5558
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
2
-
-
84855297335
-
A decade of 3C technologies: insights into nuclear organization
-
E. De Wit, and W. De Laat A decade of 3C technologies: insights into nuclear organization Genes Dev. 26 1 2012 11 24
-
(2012)
Genes Dev.
, vol.26
, Issue.1
, pp. 11-24
-
-
De Wit, E.1
De Laat, W.2
-
3
-
-
84919949716
-
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
-
S.S.P. Rao, M.H. Huntley, N.C. Durand, E.K. Stamenova, I.D. Bochkov, J.T. Robinson, and et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping Cell 159 7 2014 1665 1680
-
(2014)
Cell
, vol.159
, Issue.7
, pp. 1665-1680
-
-
Rao, S.S.P.1
Huntley, M.H.2
Durand, N.C.3
Stamenova, E.K.4
Bochkov, I.D.5
Robinson, J.T.6
-
4
-
-
67549119096
-
CTCF: master weaver of the genome
-
J.E. Phillips, and V.G. Corces CTCF: master weaver of the genome Cell 137 7 2009 1194 1211
-
(2009)
Cell
, vol.137
, Issue.7
, pp. 1194-1211
-
-
Phillips, J.E.1
Corces, V.G.2
-
5
-
-
84899415536
-
CTCF: an architectural protein bridging genome topology and function
-
C.-T. Ong, and V.G. Corces CTCF: an architectural protein bridging genome topology and function Nat. Rev. Genet. 2014
-
(2014)
Nat. Rev. Genet.
-
-
Ong, C.-T.1
Corces, V.G.2
-
6
-
-
84878188440
-
Chromatin insulators: linking genome organization to cellular function
-
J.E. Phillips-Cremins, and V.G. Corces Chromatin insulators: linking genome organization to cellular function Mol. Cell 50 4 2013 461 474
-
(2013)
Mol. Cell
, vol.50
, Issue.4
, pp. 461-474
-
-
Phillips-Cremins, J.E.1
Corces, V.G.2
-
7
-
-
84856747483
-
Three-dimensional folding and functional organization principles of the Drosophila genome
-
T. Sexton, E. Yaffe, E. Kenigsberg, F. Bantignies, B. Leblanc, M. Hoichman, and et al. Three-dimensional folding and functional organization principles of the Drosophila genome Cell 148 3 2012 458 472
-
(2012)
Cell
, vol.148
, Issue.3
, pp. 458-472
-
-
Sexton, T.1
Yaffe, E.2
Kenigsberg, E.3
Bantignies, F.4
Leblanc, B.5
Hoichman, M.6
-
8
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
E.P. Nora, B.R. Lajoie, E.G. Schulz, L. Giorgetti, I. Okamoto, N. Servant, and et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre Nature 485 7398 2012 381 385
-
(2012)
Nature
, vol.485
, Issue.7398
, pp. 381-385
-
-
Nora, E.P.1
Lajoie, B.R.2
Schulz, E.G.3
Giorgetti, L.4
Okamoto, I.5
Servant, N.6
-
9
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
J.R. Dixon, S. Selvaraj, F. Yue, A. Kim, Y. Li, Y. Shen, and et al. Topological domains in mammalian genomes identified by analysis of chromatin interactions Nature 485 7 2012 376 380
-
(2012)
Nature
, vol.485
, Issue.7
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
-
10
-
-
84869003748
-
Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains
-
C. Hou, L. Li, Z.S. Qin, and V.G. Corces Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains Mol. Cell 48 3 2012 471 484
-
(2012)
Mol. Cell
, vol.48
, Issue.3
, pp. 471-484
-
-
Hou, C.1
Li, L.2
Qin, Z.S.3
Corces, V.G.4
-
11
-
-
84888018217
-
Organization of the mitotic chromosome
-
N. Naumova, M. Imakaev, G. Fudenberg, Y. Zhan, B.R. Lajoie, L.A. Mirny, and J. Dekker Organization of the mitotic chromosome Science 342 6161 2013 948 953
-
(2013)
Science
, vol.342
, Issue.6161
, pp. 948-953
-
-
Naumova, N.1
Imakaev, M.2
Fudenberg, G.3
Zhan, Y.4
Lajoie, B.R.5
Mirny, L.A.6
Dekker, J.7
-
12
-
-
84924533047
-
Comparative HiC reveals that CTCF underlies evolution of chromosomal domain architecture
-
M. Vietri Rudan, C. Barrington, S. Henderson, C. Ernst, D.T. Odom, A. Tanay, and S. Hadjur Comparative HiC reveals that CTCF underlies evolution of chromosomal domain architecture Cell Rep. 10 8 2015 1297 1309
-
(2015)
Cell Rep.
, vol.10
, Issue.8
, pp. 1297-1309
-
-
Vietri Rudan, M.1
Barrington, C.2
Henderson, S.3
Ernst, C.4
Odom, D.T.5
Tanay, A.6
Hadjur, S.7
-
13
-
-
84902212007
-
The 3D genome in transcriptional regulation and pluripotency
-
D.U. Gorkin, D. Leung, and B. Ren The 3D genome in transcriptional regulation and pluripotency Cell Stem Cell 14 6 2014 762 775
-
(2014)
Cell Stem Cell
, vol.14
, Issue.6
, pp. 762-775
-
-
Gorkin, D.U.1
Leung, D.2
Ren, B.3
-
14
-
-
84875127327
-
CTCF and cohesin: linking gene regulatory elements with their targets
-
M. Merkenschlager, and D.T. Odom CTCF and cohesin: linking gene regulatory elements with their targets Cell 152 6 2013 1285 1297
-
(2013)
Cell
, vol.152
, Issue.6
, pp. 1285-1297
-
-
Merkenschlager, M.1
Odom, D.T.2
-
15
-
-
33846283384
-
Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions
-
C. Lanctôt, T. Cheutin, M. Cremer, G. Cavalli, and T. Cremer Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions Nat. Rev. Genet. 8 2 2007 104 115
-
(2007)
Nat. Rev. Genet.
, vol.8
, Issue.2
, pp. 104-115
-
-
Lanctôt, C.1
Cheutin, T.2
Cremer, M.3
Cavalli, G.4
Cremer, T.5
-
16
-
-
84875200698
-
Functional implications of genome topology
-
G. Cavalli, and T. Misteli Functional implications of genome topology Nat. Struct. Mol. Biol. 20 3 2013 290 299
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, Issue.3
, pp. 290-299
-
-
Cavalli, G.1
Misteli, T.2
-
17
-
-
84904567038
-
3D trajectories adopted by coding and regulatory DNA elements: first-passage times for genomic interactions
-
J.S. Lucas, Y. Zhang, O.K. Dudko, and C. Murre 3D trajectories adopted by coding and regulatory DNA elements: first-passage times for genomic interactions Cell 158 2 2014 339 352
-
(2014)
Cell
, vol.158
, Issue.2
, pp. 339-352
-
-
Lucas, J.S.1
Zhang, Y.2
Dudko, O.K.3
Murre, C.4
-
18
-
-
84904552527
-
The contraction of time and space in remote chromosomal interactions
-
M. Levine The contraction of time and space in remote chromosomal interactions Cell 158 2 2014 243 244
-
(2014)
Cell
, vol.158
, Issue.2
, pp. 243-244
-
-
Levine, M.1
-
19
-
-
41349089522
-
Gene regulation in the third dimension
-
J. Dekker Gene regulation in the third dimension Science 319 5871 2008 1793 1794
-
(2008)
Science
, vol.319
, Issue.5871
, pp. 1793-1794
-
-
Dekker, J.1
-
20
-
-
84863540362
-
Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
-
H. Tjong, K. Gong, L. Chen, and F. Alber Physical tethering and volume exclusion determine higher-order genome organization in budding yeast Genome Res. 22 7 2012 1295 1305
-
(2012)
Genome Res.
, vol.22
, Issue.7
, pp. 1295-1305
-
-
Tjong, H.1
Gong, K.2
Chen, L.3
Alber, F.4
-
21
-
-
84930644118
-
Assessing the limits of restraint-based 3D modeling of genomes and genomic domains
-
in press
-
M. Trussart, F. Serra, D. Baù, I. Junier, L. Serrano, and M.A. Marti-Renom Assessing the limits of restraint-based 3D modeling of genomes and genomic domains Nucleic Acids Res. 2015 in press
-
(2015)
Nucleic Acids Res.
-
-
Trussart, M.1
Serra, F.2
Baù, D.3
Junier, I.4
Serrano, L.5
Marti-Renom, M.A.6
-
22
-
-
84870568600
-
CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus
-
I. Junier, R.K. Dale, C. Hou, F. Képès, and A. Dean CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus Nucleic Acids Res. 40 16 2012 7718 7727
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.16
, pp. 7718-7727
-
-
Junier, I.1
Dale, R.K.2
Hou, C.3
Képès, F.4
Dean, A.5
-
23
-
-
84871774401
-
Recovering ensembles of chromatin conformations from contact probabilities
-
D. Meluzzi, and G. Arya Recovering ensembles of chromatin conformations from contact probabilities Nucleic Acids Res. 41 1 2013 63 75
-
(2013)
Nucleic Acids Res.
, vol.41
, Issue.1
, pp. 63-75
-
-
Meluzzi, D.1
Arya, G.2
-
24
-
-
84900297485
-
Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription
-
L. Giorgetti, R. Galupa, E.P. Nora, T. Piolot, F. Lam, J. Dekker, and et al. Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription Cell 157 4 2014 950 963
-
(2014)
Cell
, vol.157
, Issue.4
, pp. 950-963
-
-
Giorgetti, L.1
Galupa, R.2
Nora, E.P.3
Piolot, T.4
Lam, F.5
Dekker, J.6
-
25
-
-
84907512608
-
Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
-
F. Le Dily, D. Baù, A. Pohl, G.P. Vicent, F. Serra, D. Soronellas, and et al. Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation Genes Dev. 28 19 2014 2151 2162
-
(2014)
Genes Dev.
, vol.28
, Issue.19
, pp. 2151-2162
-
-
Le Dily, F.1
Baù, D.2
Pohl, A.3
Vicent, G.P.4
Serra, F.5
Soronellas, D.6
-
26
-
-
84866997011
-
Iterative correction of HiC data reveals hallmarks of chromosome organization
-
M. Imakaev, G. Fudenberg, R.P. McCord, N. Naumova, A. Goloborodko, B.R. Lajoie, and et al. Iterative correction of HiC data reveals hallmarks of chromosome organization Nat. Methods 9 10 2012 999 1003
-
(2012)
Nat. Methods
, vol.9
, Issue.10
, pp. 999-1003
-
-
Imakaev, M.1
Fudenberg, G.2
Mccord, R.P.3
Naumova, N.4
Goloborodko, A.5
Lajoie, B.R.6
-
27
-
-
84886853624
-
Topology of mammalian developmental enhancers and their regulatory landscapes
-
W. De Laat, and D. Duboule Topology of mammalian developmental enhancers and their regulatory landscapes Nature 502 7 2013 499 506
-
(2013)
Nature
, vol.502
, Issue.7
, pp. 499-506
-
-
De Laat, W.1
Duboule, D.2
-
28
-
-
84878754528
-
A switch between topological domains underlies HoxD genes collinearity in mouse limbs
-
G. Andrey, T. Montavon, B. Mascrez, F. Gonzalez, D. Noordermeer, M. Leleu, and et al. A switch between topological domains underlies HoxD genes collinearity in mouse limbs Science 340 6137 2013 1234167
-
(2013)
Science
, vol.340
, Issue.6137
, pp. 1234167
-
-
Andrey, G.1
Montavon, T.2
Mascrez, B.3
Gonzalez, F.4
Noordermeer, D.5
Leleu, M.6
-
29
-
-
84899894562
-
Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci
-
D. Noordermeer, M. Leleu, P. Schorderet, E. Joye, F. Chabaud, and D. Duboule Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci eLife 3 2014 e02557
-
(2014)
eLife
, vol.3
-
-
Noordermeer, D.1
Leleu, M.2
Schorderet, P.3
Joye, E.4
Chabaud, F.5
Duboule, D.6
-
30
-
-
84885617426
-
Single-cell HiC reveals cell-to-cell variability in chromosome structure
-
T. Nagano, Y. Lubling, T.J. Stevens, S. Schoenfelder, E. Yaffe, W. Dean, and et al. Single-cell HiC reveals cell-to-cell variability in chromosome structure Nature 502 7 2013 59 64
-
(2013)
Nature
, vol.502
, Issue.7
, pp. 59-64
-
-
Nagano, T.1
Lubling, Y.2
Stevens, T.J.3
Schoenfelder, S.4
Yaffe, E.5
Dean, W.6
-
31
-
-
80054984337
-
Probabilistic modeling of HiC contact maps eliminates systematic biases to characterize global chromosomal architecture
-
E. Yaffe, and A. Tanay Probabilistic modeling of HiC contact maps eliminates systematic biases to characterize global chromosomal architecture Nat. Genet. 43 11 2011 1059 1065
-
(2011)
Nat. Genet.
, vol.43
, Issue.11
, pp. 1059-1065
-
-
Yaffe, E.1
Tanay, A.2
-
32
-
-
84900311382
-
Understanding spatial organizations of chromosomes via statistical analysis of HiC data
-
M. Hu, K. Deng, Z. Qin, and J.S. Liu Understanding spatial organizations of chromosomes via statistical analysis of HiC data Quant. Biol. 2013
-
(2013)
Quant. Biol.
-
-
Hu, M.1
Deng, K.2
Qin, Z.3
Liu, J.S.4
-
34
-
-
79960948298
-
Bridging the resolution gap in structural modeling of 3D genome organization
-
M.A. Marti-Renom, and L.A. Mirny Bridging the resolution gap in structural modeling of 3D genome organization PLoS Comput. Biol. 7 7 2011 e1002125
-
(2011)
PLoS Comput. Biol.
, vol.7
, Issue.7
-
-
Marti-Renom, M.A.1
Mirny, L.A.2
-
35
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
E. Lieberman-Aiden, N.L. van Berkum, L. Williams, M. Imakaev, T. Ragoczy, A. Telling, and et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome Science 326 5950 2009 289 293
-
(2009)
Science
, vol.326
, Issue.5950
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
-
36
-
-
78650994865
-
The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules
-
D. Baù, A. Sanyal, B.R. Lajoie, E. Capriotti, M. Byron, J.B. Lawrence, and et al. The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules Nat. Struct. Mol. Biol. 18 1 2011 107 114
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, Issue.1
, pp. 107-114
-
-
Baù, D.1
Sanyal, A.2
Lajoie, B.R.3
Capriotti, E.4
Byron, M.5
Lawrence, J.B.6
-
37
-
-
80054875965
-
Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling
-
M. Rousseau, J. Fraser, M.A. Ferraiuolo, J. Dostie, and M. Blanchette Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling BMC Bioinformatics 12 1 2011 414
-
(2011)
BMC Bioinformatics
, vol.12
, Issue.1
, pp. 414
-
-
Rousseau, M.1
Fraser, J.2
Ferraiuolo, M.A.3
Dostie, J.4
Blanchette, M.5
-
38
-
-
84900465317
-
Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
-
F. Ay, E.M. Bunnik, N. Varoquaux, S.M. Bol, J. Prudhomme, J.-P. Vert, and et al. Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression Genome Res. 24 6 2014 974 988
-
(2014)
Genome Res.
, vol.24
, Issue.6
, pp. 974-988
-
-
Ay, F.1
Bunnik, E.M.2
Varoquaux, N.3
Bol, S.M.4
Prudhomme, J.5
Vert, J.-P.6
-
39
-
-
84873507172
-
-
M. Hu, K. Deng, Z. Qin, J. Dixon, S. Selvaraj, J. Fang, and et al. PLoS Comput. Biol. 9 1 2013 e1002893
-
(2013)
PLoS Comput. Biol.
, vol.9
, Issue.1
-
-
Hu, M.1
Deng, K.2
Qin, Z.3
Dixon, J.4
Selvaraj, S.5
Fang, J.6
-
40
-
-
84862917808
-
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
-
R. Kalhor, H. Tjong, N. Jayathilaka, F. Alber, and L. Chen Genome architectures revealed by tethered chromosome conformation capture and population-based modeling Nat. Biotechnol. 30 1 2012 90 98
-
(2012)
Nat. Biotechnol.
, vol.30
, Issue.1
, pp. 90-98
-
-
Kalhor, R.1
Tjong, H.2
Jayathilaka, N.3
Alber, F.4
Chen, L.5
-
42
-
-
84956136196
-
Crumpled globule model of the three-dimensional structure of DNA
-
A. Grosberg, Y. Rabin, S. Havlin, and A. Neer Crumpled globule model of the three-dimensional structure of DNA EPL 23 5 1993 373 378
-
(1993)
EPL
, vol.23
, Issue.5
, pp. 373-378
-
-
Grosberg, A.1
Rabin, Y.2
Havlin, S.3
Neer, A.4
-
43
-
-
84867070913
-
Complexity of chromatin folding is captured by the strings and binders switch model
-
M. Barbieri, M. Chotalia, J. Fraser, L.-M. Lavitas, J. Dostie, A. Pombo, and M. Nicodemi Complexity of chromatin folding is captured by the strings and binders switch model Proc. Natl. Acad. Sci. 109 40 2012 16173 16178
-
(2012)
Proc. Natl. Acad. Sci.
, vol.109
, Issue.40
, pp. 16173-16178
-
-
Barbieri, M.1
Chotalia, M.2
Fraser, J.3
Lavitas, L.-M.4
Dostie, J.5
Pombo, A.6
Nicodemi, M.7
-
44
-
-
84924870007
-
Modelling epigenome folding: formation and dynamics of topologically associated chromatin domains
-
D. Jost, P. Carrivain, G. Cavalli, and C. Vaillant Modelling epigenome folding: formation and dynamics of topologically associated chromatin domains Nucleic Acids Res. 42 15 2014 9553 9561
-
(2014)
Nucleic Acids Res.
, vol.42
, Issue.15
, pp. 9553-9561
-
-
Jost, D.1
Carrivain, P.2
Cavalli, G.3
Vaillant, C.4
-
45
-
-
62649137535
-
Spatially confined folding of chromatin in the interphase nucleus
-
J. Mateos-Langerak, M. Bohn, W. de Leeuw, O. Giromus, E.M.M. Manders, P.J. Verschure, and et al. Spatially confined folding of chromatin in the interphase nucleus Proc. Natl. Acad. Sci. 106 10 2009 3812 3817
-
(2009)
Proc. Natl. Acad. Sci.
, vol.106
, Issue.10
, pp. 3812-3817
-
-
Mateos-Langerak, J.1
Bohn, M.2
De Leeuw, W.3
Giromus, O.4
Manders, E.M.M.5
Verschure, P.J.6
-
46
-
-
84908352990
-
Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modeling
-
M. Tark-Dame, H. Jerabek, E.M.M. Manders, D.W. Heermann, and R. van Driel Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modeling PLoS Comput. Biol. 10 10 2014 e1003877
-
(2014)
PLoS Comput. Biol.
, vol.10
, Issue.10
-
-
Tark-Dame, M.1
Jerabek, H.2
Manders, E.M.M.3
Heermann, D.W.4
Van Driel, R.5
-
47
-
-
84867842663
-
A predictive computational model of the dynamic 3D interphase yeast nucleus
-
H. Wong, H. Marie-Nelly, S. Herbert, P. Carrivain, H. Blanc, R. Koszul, and et al. A predictive computational model of the dynamic 3D interphase yeast nucleus Curr. Biol. 22 20 2012 1881 1890
-
(2012)
Curr. Biol.
, vol.22
, Issue.20
, pp. 1881-1890
-
-
Wong, H.1
Marie-Nelly, H.2
Herbert, S.3
Carrivain, P.4
Blanc, H.5
Koszul, R.6
-
48
-
-
37749046912
-
Experimental parameterization of an energy function for the simulation of unfolded proteins
-
A.B. Norgaard, J. Ferkinghoff-Borg, and K. Lindorff-Larsen Experimental parameterization of an energy function for the simulation of unfolded proteins Biophys. J. 94 1 2008 182 192
-
(2008)
Biophys. J.
, vol.94
, Issue.1
, pp. 182-192
-
-
Norgaard, A.B.1
Ferkinghoff-Borg, J.2
Lindorff-Larsen, K.3
-
49
-
-
77649198707
-
Spatial and topological organization of DNA chains induced by gene co-localization
-
I. Junier, O. Martin, and F. Képès Spatial and topological organization of DNA chains induced by gene co-localization PLoS Comput. Biol. 6 2 2010 e1000678
-
(2010)
PLoS Comput. Biol.
, vol.6
, Issue.2
-
-
Junier, I.1
Martin, O.2
Képès, F.3
-
50
-
-
84892715701
-
Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs
-
S. Berlivet, D. Paquette, A. Dumouchel, D. Langlais, J. Dostie, and M. Kmita Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs PLoS Genet. 9 12 2013 e1004018
-
(2013)
PLoS Genet.
, vol.9
, Issue.12
-
-
Berlivet, S.1
Paquette, D.2
Dumouchel, A.3
Langlais, D.4
Dostie, J.5
Kmita, M.6
-
51
-
-
84878860751
-
Architectural protein subclasses shape 3D organization of genomes during lineage commitment
-
J.E. Phillips-Cremins, M.E.G. Sauria, A. Sanyal, T.I. Gerasimova, B.R. Lajoie, J.S.K. Bell, and et al. Architectural protein subclasses shape 3D organization of genomes during lineage commitment Cell 153 6 2013 1281 1295
-
(2013)
Cell
, vol.153
, Issue.6
, pp. 1281-1295
-
-
Phillips-Cremins, J.E.1
Sauria, M.E.G.2
Sanyal, A.3
Gerasimova, T.I.4
Lajoie, B.R.5
Bell, J.S.K.6
-
52
-
-
0035509641
-
Chromatin: a tunable spring at work inside chromosomes
-
E. Ben-Haïm, A. Lesne, and J.-M. Victor Chromatin: a tunable spring at work inside chromosomes Phys. Rev. E 64 5 2001 51921
-
(2001)
Phys. Rev. E
, vol.64
, Issue.5
, pp. 51921
-
-
Ben-Haïm, E.1
Lesne, A.2
Victor, J.-M.3
-
53
-
-
84887460979
-
High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome
-
H. Hajjoul, J. Mathon, H. Ranchon, I. Goiffon, J. Mozziconacci, B. Albert, and et al. High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome Genome Res. 23 11 2013 1829 1838
-
(2013)
Genome Res.
, vol.23
, Issue.11
, pp. 1829-1838
-
-
Hajjoul, H.1
Mathon, J.2
Ranchon, H.3
Goiffon, I.4
Mozziconacci, J.5
Albert, B.6
-
54
-
-
77957776228
-
Systematic protein location mapping reveals five principal chromatin types in Drosophila cells
-
G.J. Filion, J.G. van Bemmel, U. Braunschweig, W. Talhout, J. Kind, L.D. Ward, and et al. Systematic protein location mapping reveals five principal chromatin types in Drosophila cells Cell 143 2 2010 212 224
-
(2010)
Cell
, vol.143
, Issue.2
, pp. 212-224
-
-
Filion, G.J.1
Van Bemmel, J.G.2
Braunschweig, U.3
Talhout, W.4
Kind, J.5
Ward, L.D.6
-
55
-
-
79956066320
-
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
-
F. Roudier, I. Ahmed, C. Bérard, A. Sarazin, T. Mary-Huard, S. Cortijo, and et al. Integrative epigenomic mapping defines four main chromatin states in Arabidopsis EMBO J. 30 10 2011 1928 1938
-
(2011)
EMBO J.
, vol.30
, Issue.10
, pp. 1928-1938
-
-
Roudier, F.1
Ahmed, I.2
Bérard, C.3
Sarazin, A.4
Mary-Huard, T.5
Cortijo, S.6
-
56
-
-
84865483795
-
Normalization of a chromosomal contact map
-
A. Cournac, H. Marie-Nelly, M. Marbouty, R. Koszul, and J. Mozziconacci Normalization of a chromosomal contact map BMC Genomics 13 2012 436
-
(2012)
BMC Genomics
, vol.13
, pp. 436
-
-
Cournac, A.1
Marie-Nelly, H.2
Marbouty, M.3
Koszul, R.4
Mozziconacci, J.5
-
57
-
-
84901838628
-
Statistical confidence estimation for HiC data reveals regulatory chromatin contacts
-
F. Ay, T.L. Bailey, and W.S. Noble Statistical confidence estimation for HiC data reveals regulatory chromatin contacts Genome Res. 24 6 2014 999 1011
-
(2014)
Genome Res.
, vol.24
, Issue.6
, pp. 999-1011
-
-
Ay, F.1
Bailey, T.L.2
Noble, W.S.3
-
58
-
-
84921766204
-
High-resolution 3D DNA FISH using plasmid probes and computational correction of optical aberrations to study chromatin structure at the sub-megabase scale
-
Chapter 3
-
L. Giorgetti, T. Piolot, and E. Heard High-resolution 3D DNA FISH using plasmid probes and computational correction of optical aberrations to study chromatin structure at the sub-megabase scale Methods Mol. Biol. 1262 Chapter 3 2015 37 53
-
(2015)
Methods Mol. Biol.
, vol.1262
, pp. 37-53
-
-
Giorgetti, L.1
Piolot, T.2
Heard, E.3
-
59
-
-
84918510740
-
Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization
-
I. Williamson, S. Berlivet, R. Eskeland, S. Boyle, R.S. Illingworth, D. Paquette, and et al. Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization Genes Dev. 28 24 2014 2778 2791
-
(2014)
Genes Dev.
, vol.28
, Issue.24
, pp. 2778-2791
-
-
Williamson, I.1
Berlivet, S.2
Eskeland, R.3
Boyle, S.4
Illingworth, R.S.5
Paquette, D.6
-
60
-
-
34648826792
-
Multicolor super-resolution imaging with photo-switchable fluorescent probes
-
M. Bates, B. Huang, G.T. Dempsey, and X. Zhuang Multicolor super-resolution imaging with photo-switchable fluorescent probes Science 317 5845 2007 1749 1753
-
(2007)
Science
, vol.317
, Issue.5845
, pp. 1749-1753
-
-
Bates, M.1
Huang, B.2
Dempsey, G.T.3
Zhuang, X.4
-
61
-
-
84924347318
-
Multicolor CRISPR labeling of chromosomal loci in human cells
-
H. Ma, A. Naseri, P. Reyes-Gutierrez, S.A. Wolfe, S. Zhang, and T. Pederson Multicolor CRISPR labeling of chromosomal loci in human cells Proc. Natl. Acad. Sci. 112 10 2015 3002 3007
-
(2015)
Proc. Natl. Acad. Sci.
, vol.112
, Issue.10
, pp. 3002-3007
-
-
Ma, H.1
Naseri, A.2
Reyes-Gutierrez, P.3
Wolfe, S.A.4
Zhang, S.5
Pederson, T.6
-
62
-
-
78650512639
-
Breaking the diffraction barrier: super-resolution imaging of cells
-
B. Huang, H. Babcock, and X. Zhuang Breaking the diffraction barrier: super-resolution imaging of cells Cell 143 7 2010 1047 1058
-
(2010)
Cell
, vol.143
, Issue.7
, pp. 1047-1058
-
-
Huang, B.1
Babcock, H.2
Zhuang, X.3
-
63
-
-
84859845974
-
The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives for studies of nuclear architecture
-
Y. Markaki, D. Smeets, S. Fiedler, V.J. Schmid, L. Schermelleh, T. Cremer, and M. Cremer The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives for studies of nuclear architecture BioEssays 34 5 2012 412 426
-
(2012)
BioEssays
, vol.34
, Issue.5
, pp. 412-426
-
-
Markaki, Y.1
Smeets, D.2
Fiedler, S.3
Schmid, V.J.4
Schermelleh, L.5
Cremer, T.6
Cremer, M.7
-
64
-
-
84897424193
-
DNA dynamics during early double-strand break processing revealed by non-intrusive imaging of living cells
-
H. Saad, F. Gallardo, M. Dalvai, N. Tanguy-le-Gac, D. Lane, and K. Bystricky DNA dynamics during early double-strand break processing revealed by non-intrusive imaging of living cells PLoS Genet. 10 3 2014 e1004187
-
(2014)
PLoS Genet.
, vol.10
, Issue.3
-
-
Saad, H.1
Gallardo, F.2
Dalvai, M.3
Tanguy-Le-Gac, N.4
Lane, D.5
Bystricky, K.6
-
65
-
-
84894063115
-
Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system
-
B. Chen, L.A. Gilbert, B.A. Cimini, J. Schnitzbauer, W. Zhang, G.-W. Li, and et al. Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system Cell 155 7 2013 1479 1491
-
(2013)
Cell
, vol.155
, Issue.7
, pp. 1479-1491
-
-
Chen, B.1
Gilbert, L.A.2
Cimini, B.A.3
Schnitzbauer, J.4
Zhang, W.5
Li, G.-W.6
-
66
-
-
84887010498
-
Genome engineering using the CRISPR-Cas9 system
-
F.A. Ran, P.D. Hsu, J. Wright, V. Agarwala, D.A. Scott, and F. Zhang Genome engineering using the CRISPR-Cas9 system Nat. Protoc. 8 11 2013 2281 2308
-
(2013)
Nat. Protoc.
, vol.8
, Issue.11
, pp. 2281-2308
-
-
Ran, F.A.1
Hsu, P.D.2
Wright, J.3
Agarwala, V.4
Scott, D.A.5
Zhang, F.6
-
67
-
-
84913594397
-
The new frontier of genome engineering with CRISPR-Cas9
-
J.A. Doudna, and E. Charpentier The new frontier of genome engineering with CRISPR-Cas9 Science 346 6213 2014 1258096
-
(2014)
Science
, vol.346
, Issue.6213
, pp. 1258096
-
-
Doudna, J.A.1
Charpentier, E.2
|