-
1
-
-
73249121905
-
Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome
-
Addo-Quaye, C., Snyder, J.A., Park, Y.B., Li, Y.-F., Sunkar, R., and Axtell, M.J. (2009). Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome. RNA 15: 2112-2121.
-
(2009)
RNA
, vol.15
, pp. 2112-2121
-
-
Addo-Quaye, C.1
Snyder, J.A.2
Park, Y.B.3
Li, Y.-F.4
Sunkar, R.5
Axtell, M.J.6
-
2
-
-
32944464673
-
Cloning and characterization of micro-RNAs from moss
-
Arazi, T., Talmor-Neiman, M., Stav, R., Riese, M., Huijser, P and Baulcombe, D.C. (2005). Cloning and characterization of micro-RNAs from moss. Plant J. 43: 837-848.
-
(2005)
Plant J
, vol.43
, pp. 837-848
-
-
Arazi, T.1
Talmor-Neiman, M.2
Stav, R.3
Riese, M.4
Huijser, P.5
Baulcombe, D.C.6
-
3
-
-
84870515741
-
DICER-LIKE3 activity in Physcomitrella patens DICER-LIKE4 mutants causes severe developmental dysfunction and sterility
-
Arif, M.A., Fattash, I., Ma, Z., Cho, S.H., Beike, A.K., Reski, R., Axtell, M.J., and Frank, W. (2012). DICER-LIKE3 activity in Physcomitrella patens DICER-LIKE4 mutants causes severe developmental dysfunction and sterility. Mol. Plant 5: 1281-1294.
-
(2012)
Mol. Plant
, vol.5
, pp. 1281-1294
-
-
Arif, M.A.1
Fattash, I.2
Ma, Z.3
Cho, S.H.4
Beike, A.K.5
Reski, R.6
Axtell, M.J.7
Frank, W.8
-
4
-
-
84875985965
-
Role of RNA interference (RNAi) in the moss Physcomitrella patens
-
Arif, M.A., Frank, W., and Khraiwesh, B. (2013). Role of RNA interference (RNAi) in the moss Physcomitrella patens. Int.J.Mol.Sci. 14: 1516-1540.
-
(2013)
Int.J.Mol.Sci
, vol.14
, pp. 1516-1540
-
-
Arif, M.A.1
Frank, W.2
Khraiwesh, B.3
-
5
-
-
0017404566
-
The isolation and preliminary characterisation of auxotrophic and analogue resistant mutants of the moss, Physcomitrella patens
-
Ashton, N.W., and Cove, D.J. (1977). The isolation and preliminary characterisation of auxotrophic and analogue resistant mutants of the moss, Physcomitrella patens. Mol. Gen. Genet. 154: 87-95.
-
(1977)
Mol. Gen. Genet
, vol.154
, pp. 87-95
-
-
Ashton, N.W.1
Cove, D.J.2
-
6
-
-
84877677064
-
Classification and comparison of small RNAs from plants
-
Axtell, M.J. (2013a). Classification and comparison of small RNAs from plants. Annu. Rev. Plant Biol. 64: 137-159.
-
(2013)
Annu. Rev. Plant Biol
, vol.64
, pp. 137-159
-
-
Axtell, M.J.1
-
7
-
-
84878022987
-
ShortStack: Comprehensive annotation and quantification of small RNA genes
-
Axtell, M.J. (2013b). ShortStack: comprehensive annotation and quantification of small RNA genes. RNA 19: 740-751.
-
(2013)
RNA
, vol.19
, pp. 740-751
-
-
Axtell, M.J.1
-
8
-
-
22144457368
-
Antiquity of microRNAs and their targets in land plants
-
Axtell, M.J., and Bartel, D.P. (2005). Antiquity of microRNAs and their targets in land plants. Plant Cell 17: 1658-1673.
-
(2005)
Plant Cell
, vol.17
, pp. 1658-1673
-
-
Axtell, M.J.1
Bartel, D.P.2
-
9
-
-
33750440526
-
A two-hit trigger for siRNA biogenesis in plants
-
Axtell, M.J., Jan, C., Rajagopalan, R., and Bartel, D.P. (2006). A two-hit trigger for siRNA biogenesis in plants. Cell 127: 565-577.
-
(2006)
Cell
, vol.127
, pp. 565-577
-
-
Axtell, M.J.1
Jan, C.2
Rajagopalan, R.3
Bartel, D.P.4
-
10
-
-
34547668337
-
Common functions for diverse small RNAs of land plants
-
Axtell, M.J., Snyder, J.A., and Bartel, D.P. (2007). Common functions for diverse small RNAs of land plants. Plant Cell 19: 1750-1769.
-
(2007)
Plant Cell
, vol.19
, pp. 1750-1769
-
-
Axtell, M.J.1
Snyder, J.A.2
Bartel, D.P.3
-
11
-
-
79956309501
-
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants
-
Banks, J.A., et al. (2011). The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332: 960-963.
-
(2011)
Science
, vol.332
, pp. 960-963
-
-
Banks, J.A.1
-
12
-
-
84899487011
-
Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs
-
Chávez Montes, R.A., de Fátima Rosas-Cárdenas, F., De Paoli, E., Accerbi, M., Rymarquis, L.A., Mahalingam, G., Marsch-Martínez, N., Meyers, B.C., Green, P.J., and de Folter, S. (2014). Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs. Nat. Commun. 5: 3722.
-
(2014)
Nat. Commun
, vol.5
, pp. 3722
-
-
Chávez Montes, R.A.1
De Fátima Rosas-Cárdenas, F.2
De Paoli, E.3
Accerbi, M.4
Rymarquis, L.A.5
Mahalingam, G.6
Marsch-Martínez, N.7
Meyers, B.C.8
Green, P.J.9
De Folter, S.10
-
13
-
-
84861438100
-
Distinct phytochrome actions in nonvascular plants revealed by targeted inactivation of phytobilin biosynthesis
-
Chen, Y.-R., Su, Y.S and Tu, S.-L.(2012). Distinct phytochrome actions in nonvascular plants revealed by targeted inactivation of phytobilin biosynthesis. Proc. Natl. Acad. Sci. USA 109: 8310-8315.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 8310-8315
-
-
Chen, Y.-R.1
Su, Y.S.2
Tu, S.-L.3
-
14
-
-
58149163280
-
Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
-
Cho, S.H., Addo-Quaye, C, Coruh, C., Arif, M.A., Ma, Z., Frank, W and Axtell, M.J. (2008). Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development. PLoS Genet. 4: e1000314.
-
(2008)
Plos Genet
, vol.4
-
-
Cho, S.H.1
Addo-Quaye, C.2
Coruh, C.3
Arif, M.A.4
Ma, Z.5
Frank, W.6
Axtell, M.J.7
-
15
-
-
84873033996
-
MiR156 and miR390 regulate tasiRNA accumulation and developmental timing in Phys-comitrella patens
-
Cho, S.H., Coruh, C., and Axtell, M.J. (2012). miR156 and miR390 regulate tasiRNA accumulation and developmental timing in Phys-comitrella patens. Plant Cell 24: 4837-4849.
-
(2012)
Plant Cell
, vol.24
, pp. 4837-4849
-
-
Cho, S.H.1
Coruh, C.2
Axtell, M.J.3
-
16
-
-
84896033622
-
Seeing the forest for the trees: Annotating small RNA producing genes in plants
-
Coruh, C., Shahid, S and Axtell, M.J. (2014). Seeing the forest for the trees: annotating small RNA producing genes in plants. Curr. Opin. Plant Biol. 18: 87-95.
-
(2014)
Curr. Opin. Plant Biol
, vol.18
, pp. 87-95
-
-
Coruh, C.1
Shahid, S.2
Axtell, M.J.3
-
17
-
-
58149347080
-
A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation
-
Daxinger, L., Kanno, T., Bucher, E., vanderWinden, J., Naumann, U., Matzke, A.J.M., and Matzke, M. (2009). A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation. EMBO J. 28: 48-57.
-
(2009)
EMBO J
, vol.28
, pp. 48-57
-
-
Daxinger, L.1
Kanno, T.2
Bucher, E.3
Vanderwinden, J.4
Naumann, U.5
Matzke, A.6
Matzke, M.7
-
18
-
-
47949086531
-
Conifers have a unique small RNA silencing signature
-
Dolgosheina, E.V., Morin, R.D., Aksay, G., Sahinalp, S.C., Magrini, V., Mardis, E.R., Mattsson, J., and Unrau, P.J. (2008). Conifers have a unique small RNA silencing signature. RNA 14: 1508-1515.
-
(2008)
RNA
, vol.14
, pp. 1508-1515
-
-
Dolgosheina, E.V.1
Morin, R.D.2
Aksay, G.3
Sahinalp, S.C.4
Magrini, V.5
Mardis, E.R.6
Mattsson, J.7
Unrau, P.J.8
-
19
-
-
77952584373
-
An endogenous, systemic RNAi pathway in plants
-
Dunoyer, P., Brosnan, C.A., Schott, G., Wang, Y., Jay, F., Alioua, A., Himber, C., and Voinnet, O. (2010). An endogenous, systemic RNAi pathway in plants. EMBO J. 29: 1699-1712.
-
(2010)
EMBO J
, vol.29
, pp. 1699-1712
-
-
Dunoyer, P.1
Brosnan, C.A.2
Schott, G.3
Wang, Y.4
Jay, F.5
Alioua, A.6
Himber, C.7
Voinnet, O.8
-
20
-
-
34047136677
-
Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
-
Fattash, I., Voss, B., Reski, R., Hess, WR and Frank, W. (2007). Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution. BMC Plant Biol. 7: 13.
-
(2007)
BMC Plant Biol
, vol.7
, pp. 13
-
-
Fattash, I.1
Voss, B.2
Reski, R.3
Hess, W.R.4
Frank, W.5
-
21
-
-
84856585935
-
Phytozome: A comparative platform for green plant genomics
-
Goodstein, D.M., Shu, S., Howson, R., Neupane, R., Hayes, R.D., Fazo, J., Mitros, T., Dirks, W., Hellsten, U., Putnam, N and Rokhsar, D.S. (2012). Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40: D1178-D1186.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D1178-D1186
-
-
Goodstein, D.M.1
Shu, S.2
Howson, R.3
Neupane, R.4
Hayes, R.D.5
Fazo, J.6
Mitros, T.7
Dirks, W.8
Hellsten, U.9
Putnam, N.10
Rokhsar, D.S.11
-
22
-
-
79960716754
-
Multisubunit RNA polymerases IV and V: Purveyors of non-coding RNA for plant gene silencing
-
Haag, J.R., and Pikaard, C.S. (2011). Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat. Rev. Mol. Cell Biol. 12: 483-492.
-
(2011)
Nat. Rev. Mol. Cell Biol
, vol.12
, pp. 483-492
-
-
Haag, J.R.1
Pikaard, C.S.2
-
23
-
-
67149119197
-
Genome-wide demethy-lation of Arabidopsis endosperm
-
Hsieh, T.-F., Ibarra, C.A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer, R.L., and Zilberman, D. (2009). Genome-wide demethy-lation of Arabidopsis endosperm. Science 324: 1451-1454.
-
(2009)
Science
, vol.324
, pp. 1451-1454
-
-
Hsieh, T.-F.1
Ibarra, C.A.2
Silva, P.3
Zemach, A.4
Eshed-Williams, L.5
Fischer, R.L.6
Zilberman, D.7
-
24
-
-
84936866747
-
Ancient origin and recent innovations of RNA polymerase IV and V
-
Huang, Y., Kendall, T., Forsythe, E.S., Dorantes-Acosta, A., Li, S., Caballero-Pérez, J., Chen, X., Arteaga-Vázquez, M., Beilstein, M.A., and Mosher, R.A. (2015). Ancient origin and recent innovations of RNA polymerase IV and V. Mol. Biol. Evol.32: 1788-1799.
-
(2015)
Mol. Biol. Evol
, vol.32
, pp. 1788-1799
-
-
Huang, Y.1
Kendall, T.2
Forsythe, E.S.3
Dorantes-Acosta, A.4
Li, S.5
Caballero-Pérez, J.6
Chen, X.7
Arteaga-Vázquez, M.8
Beilstein, M.A.9
Mosher, R.A.10
-
25
-
-
73149089202
-
Transcriptional control of gene expression by microRNAs
-
Khraiwesh, B., Arif, M.A., Seumel, G.I., Ossowski, S., Weigel, D., Reski, R., and Frank, W. (2010). Transcriptional control of gene expression by microRNAs. Cell 140: 111-122.
-
(2010)
Cell
, vol.140
, pp. 111-122
-
-
Khraiwesh, B.1
Arif, M.A.2
Seumel, G.I.3
Ossowski, S.4
Weigel, D.5
Reski, R.6
Frank, W.7
-
26
-
-
84891818318
-
MiRBase: Annotating high confidence microRNAs using deep sequencing data
-
Kozomara, A., and Griffiths-Jones, S. (2014). miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 42: D68-D73.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D68-D73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
27
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., and Salzberg, S.L. (2012). Fast gapped-read alignment with Bowtie 2. Nat. Methods 9: 357-359.
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
28
-
-
84879417659
-
Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1
-
Law, J.A., Du, J., Hale, C.J., Feng, S., Krajewski, K., Palanca, A.M. S., Strahl, B.D., Patel, D.J., and Jacobsen, S.E. (2013). Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature 498: 385-389.
-
(2013)
Nature
, vol.498
, pp. 385-389
-
-
Law, J.A.1
Du, J.2
Hale, C.J.3
Feng, S.4
Krajewski, K.5
Palanca, A.6
Strahl, B.D.7
Patel, D.J.8
Jacobsen, S.E.9
-
29
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
1000 Genome Project Data Processing Subgroup
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., and Durbin, R.; 1000 Genome Project Data Processing Subgroup (2009). The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
30
-
-
4644312235
-
The role of RNA interference in heterochromatic silencing
-
Lippman, Z., and Martienssen, R. (2004). The role of RNA interference in heterochromatic silencing. Nature 431: 364-370.
-
(2004)
Nature
, vol.431
, pp. 364-370
-
-
Lippman, Z.1
Martienssen, R.2
-
31
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe, T.M., and Eddy, S.R. (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
32
-
-
30844438338
-
Structural basis for double-stranded RNA processing by Dicer
-
Macrae, I.J., Zhou, K., Li, F., Repic, A., Brooks, A.N., Cande, W.Z., Adams, P.D., and Doudna, J.A. (2006). Structural basis for double-stranded RNA processing by Dicer. Science 311: 195-198.
-
(2006)
Science
, vol.311
, pp. 195-198
-
-
Macrae, I.J.1
Zhou, K.2
Li, F.3
Repic, A.4
Brooks, A.N.5
Cande, W.Z.6
Adams, P.D.7
Doudna, J.A.8
-
33
-
-
26444477370
-
Germ line transcripts are processed by a Dicer-like protein that is essential for developmental-programmed genome rearrangements of Tetrahymena thermophila
-
Malone, C.D., Anderson, A.M., Motl, J.A., Rexer, C.H., and Chalker, D.L. (2005). Germ line transcripts are processed by a Dicer-like protein that is essential for developmental-programmed genome rearrangements of Tetrahymena thermophila. Mol. Cell. Biol. 25: 9151-9164.
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 9151-9164
-
-
Malone, C.D.1
Erson, A.M.2
Motl, J.A.3
Rexer, C.H.4
Chalker, D.L.5
-
34
-
-
33646082498
-
The evolution and diversification of Dicers in plants
-
Margis, R., Fusaro, A.F., Smith, N.A., Curtin, S.J., Watson, J.M., Finnegan, E.J., and Waterhouse, P.M. (2006). The evolution and diversification of Dicers in plants. FEBS Lett. 580: 2442-2450.
-
(2006)
FEBS Lett
, vol.580
, pp. 2442-2450
-
-
Margis, R.1
Fusaro, A.F.2
Smith, N.A.3
Curtin, S.J.4
Watson, J.M.5
Finnegan, E.J.6
Waterhouse, P.M.7
-
35
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing
-
Martin, M. (2011). Cutadapt removes adapter sequences from high-throughput sequencing. EMBnet Journal 17: 10-12.
-
(2011)
Embnet Journal
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
36
-
-
84901041535
-
RNA-directed DNA methylation: An epigenetic pathway of increasing complexity
-
Matzke, M.A., and Mosher, R.A. (2014). RNA-directed DNA methylation: an epigenetic pathway of increasing complexity. Nat. Rev. Genet. 15: 394-408.
-
(2014)
Nat. Rev. Genet
, vol.15
, pp. 394-408
-
-
Matzke, M.A.1
Mosher, R.A.2
-
37
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide
-
Mi, S., et al. (2008). Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. Cell 133: 116-127.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
-
38
-
-
11844263265
-
A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase
-
Mochizuki, K., and Gorovsky, M.A. (2005). A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase. Genes Dev. 19: 77-89.
-
(2005)
Genes Dev
, vol.19
, pp. 77-89
-
-
Mochizuki, K.1
Gorovsky, M.A.2
-
39
-
-
41649102715
-
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
-
Morin, R.D., Aksay, G., Dolgosheina, E., Ebhardt, H.A., Magrini, V., Mardis, E.R., Sahinalp, S.C., and Unrau, P.J. (2008). Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. GenomeRes. 18: 571-584.
-
(2008)
Genomeres
, vol.18
, pp. 571-584
-
-
Morin, R.D.1
Aksay, G.2
Dolgosheina, E.3
Ebhardt, H.A.4
Magrini, V.5
Mardis, E.R.6
Sahinalp, S.C.7
Unrau, P.J.8
-
40
-
-
42549096814
-
PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
-
Mosher, R.A., Schwach, F., Studholme, D., and Baulcombe, D.C. (2008). PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis. Proc. Natl. Acad. Sci. USA 105: 3145-3150.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 3145-3150
-
-
Mosher, R.A.1
Schwach, F.2
Studholme, D.3
Baulcombe, D.C.4
-
41
-
-
84873606896
-
Evolution of animal and plant dicers: Early parallel duplications and recurrent adaptation of antiviral RNA binding in plants
-
Mukherjee, K., Campos, H., and Kolaczkowski, B. (2013). Evolution of animal and plant dicers: early parallel duplications and recurrent adaptation of antiviral RNA binding in plants. Mol. Biol. Evol. 30: 627-641.
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 627-641
-
-
Mukherjee, K.1
Campos, H.2
Kolaczkowski, B.3
-
42
-
-
54449085115
-
Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant
-
Nobuta, K., et al. (2008). Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant. Proc. Natl. Acad. Sci. USA 105: 14958-14963.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 14958-14963
-
-
Nobuta, K.1
-
43
-
-
84878420758
-
The Norway spruce genome sequence and conifer genome evolution
-
Nystedt, B., et al. (2013). The Norway spruce genome sequence and conifer genome evolution. Nature 497: 579-584.
-
(2013)
Nature
, vol.497
, pp. 579-584
-
-
Nystedt, B.1
-
44
-
-
44949098384
-
Improved northern blot method for enhanced detection of small RNA
-
Pall, G.S., and Hamilton, A.J. (2008). Improved northern blot method for enhanced detection of small RNA. Nat. Protoc. 3: 1077-1084.
-
(2008)
Nat. Protoc
, vol.3
, pp. 1077-1084
-
-
Pall, G.S.1
Hamilton, A.J.2
-
45
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A.R., and Hall, I.M. (2010). BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
46
-
-
37849032457
-
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
-
Rensing, S.A., et al. (2008). The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319: 64-69.
-
(2008)
Science
, vol.319
, pp. 64-69
-
-
Rensing, S.A.1
-
47
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M.D., McCarthy, D.J., and Smyth G.K. (2010). edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
49
-
-
33750560215
-
Identification of trans-acting siRNAs in moss and an RNA-dependent RNA polymerase required for their biogenesis
-
Talmor-Neiman, M., Stav, R., Klipcan, L., Buxdorf, K., Baulcombe, D.C., and Arazi, T. (2006). Identification of trans-acting siRNAs in moss and an RNA-dependent RNA polymerase required for their biogenesis. Plant J. 48: 511-521.
-
(2006)
Plant J
, vol.48
, pp. 511-521
-
-
Talmor-Neiman, M.1
Stav, R.2
Klipcan, L.3
Buxdorf, K.4
Baulcombe, D.C.5
Arazi, T.6
-
50
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M and Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739.
-
(2011)
Mol. Biol. Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
51
-
-
55449131096
-
Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates tran-scriptional silencing of overlapping and adjacent genes
-
Wierzbicki, A.T., Haag, J.R., and Pikaard, C.S. (2008). Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates tran-scriptional silencing of overlapping and adjacent genes. Cell 135: 635-648.
-
(2008)
Cell
, vol.135
, pp. 635-648
-
-
Wierzbicki, A.T.1
Haag, J.R.2
Pikaard, C.S.3
-
52
-
-
67349112845
-
RNA polymerase V transcription guides ARGONAUTE4 to chromatin
-
Wierzbicki, A.T., Ream, T.S., Haag, J.R., and Pikaard, C.S. (2009). RNA polymerase V transcription guides ARGONAUTE4 to chromatin. Nat. Genet. 41: 630-634.
-
(2009)
Nat. Genet
, vol.41
, pp. 630-634
-
-
Wierzbicki, A.T.1
Ream, T.S.2
Haag, J.R.3
Pikaard, C.S.4
-
53
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie, Z., Johansen, L.K., Gustafson, A.M., Kasschau, K.D., Lellis, A. D., Zilberman, D., Jacobsen, S.E., and Carrington, J.C. (2004). Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2: E104.
-
(2004)
Plos Biol
, vol.2
, pp. 104
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
54
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach, A., McDaniel, I.E., Silva, P., and Zilberman, D. (2010). Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328: 916-919.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
55
-
-
84877866795
-
DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV
-
Zhang, H., et al. (2013). DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV. Proc. Natl. Acad. Sci. USA 110: 8290-8295.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 8290-8295
-
-
Zhang, H.1
-
56
-
-
84892414017
-
Deci-pheringsmallnoncodingRNAsduringthetransitionfromdormantembryo to germinated embryo in Larches (Larix leptolepis)
-
Zhang, J., Zhang, S., Han, S., Li, X., Tong, Z., and Qi, L. (2013). Deci-pheringsmallnoncodingRNAsduringthetransitionfromdormantembryo to germinated embryo in Larches (Larix leptolepis). PLoS One 8: e81452.
-
(2013)
Plos One
, vol.8
-
-
Zhang, J.1
Zhang, S.2
Han, S.3
Li, X.4
Tong, Z.5
Qi, L.6
-
57
-
-
69549127823
-
Evolution of the RNA-dependent RNA polymerase (RdRP) genes: Duplications and possible losses before and after the divergence of major eu-karyotic groups
-
Zong, J., Yao, X., Yin, J., Zhang, D and Ma, H. (2009). Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eu-karyotic groups. Gene 447: 29-39.
-
(2009)
Gene
, vol.447
, pp. 29-39
-
-
Zong, J.1
Yao, X.2
Yin, J.3
Zhang, D.4
Ma, H.5
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