Distinct phytochrome actions in nonvascular plants revealed by targeted inactivation of phytobilin biosynthesis

Proceedings of the National Academy of Sciences of the United States of America

Volumn 109, Issue 21, 2012, Pages 8310-8315

  Chen, Yu Rong ^a   Su, Yi Shin ^a   Tu, Shih Long ^a  

^a INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME; FERREDOXIN DEPENDENT BILIN REDUCTASE; LONG HYPOCOTYL 2; MESSENGER RNA; OXIDOREDUCTASE; PHYCOUROBILIN; PHYTOCHROME; PUB SYNTHASE; TETRAPYRROLE DERIVATIVE; UNCLASSIFIED DRUG;

ARTICLE; BIOSYNTHESIS; CHROMATOPHORE; CYANOBACTERIUM; GENE ACTIVATION; GENE DISRUPTION; GENE EXPRESSION REGULATION; GENE TARGETING; GREEN ALGA; LYCOPHYTE; MOSS; NONHUMAN; PHENOTYPE; PHOTOMORPHOGENESIS; PHOTOSYNTHESIS; PHYSCOMITRELLA PATENS; PLANT GENOME; PLASTID; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN PHOSPHORYLATION; RED ALGA;

BRYOPSIDA; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; GENE KNOCKOUT TECHNIQUES; LIGHT; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PHOTOPERIOD; PHYCOBILINS; PHYCOERYTHRIN; PHYTOCHROME; PLANT PROTEINS; PLASTIDS; TETRAPYRROLES; TRANSCRIPTOME; UROBILIN;

BRYOPHYTA; CYANOBACTERIA; MAGNOLIOPHYTA; PHYSCOMITRELLA PATENS; RHODOPHYTA; TRACHEOPHYTA;

EID: 84861438100     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1201744109     Document Type: Article

References (38)

1. Briggs WR, Spudich JA, eds (2005) Handbook of Photosensory Receptors (Wiley-VCH, Weinheim, Germany).
2. Frankenberg NF, Lagarias JC (2003) Biosynthesis and biological function of bilins. The Porphyrin Handbook. Chlorophylls and Bilins: Biosynthesis, Structure and Degradation, eds Kadish KM, Smith KM, Guilard R (Academic Press, New York), Vol 13, pp 211-235.
3. Glazer AN (1999) Phycobiliproteins. Chemicals from Microalgae, ed Cohen Z (Taylor and Francis, London), pp 261-280.
4. Rockwell NC, Lagarias JC (2010) A brief history of phytochromes. ChemPhysChem 11: 1172-1180.
5. Ishizuka T, Narikawa R, Kohchi T, Katayama M, Ikeuchi M (2007) Cyanobacteriochrome TePixJ of Thermosynechococcus elongatus harbors phycoviolobilin as a chromophore. Plant Cell Physiol 48:1385-1390. (Pubitemid 47428925)
6. Rockwell NC, Martin SS, Gulevich AG, Lagarias JC (2012) Phycoviolobilin formation and spectral tuning in the DXCF cyanobacteriochrome subfamily. Biochemistry 51: 1449-1463.
7. Frankenberg N, Mukougawa K, Kohchi T, Lagarias JC (2001) Functional genomic analysis of the HY2 family of ferredoxin-dependent bilin reductases from oxygenic photosynthetic organisms. Plant Cell 13:965-978. (Pubitemid 32375914)
8. Parks BM, Quail PH (1991) Phytochrome-deficient hy1 and hy2 long hypocotyl mutants of Arabidopsis are defective in phytochrome chromophore biosynthesis. Plant Cell 3:1177-1186. (Pubitemid 21913664)
9. Kohchi T, et al. (2001) The Arabidopsis HY2 gene encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. Plant Cell 13:425-436. (Pubitemid 32207693)
10. Esch H, Hartmann E, Cove D, Wada M, Lamparter T (1999) Phytochrome-controlled phototropism of protonemata of the moss ceratodon purpureus: physiology of the wild type and class 2 ptr-mutants. Planta 209:290-298.
11. Kadota A, Wada M, Furuya M (1982) Phytochrome-mediated phototropism and different dichroic orientation of Pr and Pfr in protonemata of the fern Adiantum Capillus- veneris L. Photochem Photobiol 35:533-536.
12. Suetsugu N, Mittmann F, Wagner G, Hughes J, Wada M (2005) A chimeric photoreceptor gene, NEOCHROME, has arisen twice during plant evolution. Proc Natl Acad Sci USA 102:13705-13709. (Pubitemid 41420912)
13. Suetsugu N, Wada M (2007) Phytochrome-dependent photomovement responses mediated by phototropin family proteins in cryptogam plants. Photochem Photobiol 83:87-93. (Pubitemid 46697227)
14. Mittmann F, et al. (2004) Targeted knockout in Physcomitrella reveals direct actions of phytochrome in the cytoplasm. Proc Natl Acad Sci USA 101:13939-13944. (Pubitemid 39298511)
15. Mittmann F, Dienstbach S, Weisert A, Forreiter C (2009) Analysis of the phytochrome gene family in Ceratodon purpureus by gene targeting reveals the primary phytochrome responsible for photo- and polarotropism. Planta 230:27-37.
16. Kadota A, Sato Y, Wada M (2000) Intracellular chloroplast photorelocation in the moss Physcomitrella patens is mediated by phytochrome as well as by a blue-light receptor. Planta 210:932-937. (Pubitemid 30334071)
17. Kagawa T, Wada M (1996) Phytochrome- and blue-light-absorbing pigment-mediated directional movement of chloroplasts in dark-adapted prothallial cells of fern Adiantum as analyzed by microbeam irradiation. Planta 198:488-493.
18. Killilea SD, O'Carra P (1985) Structure and apoprotein linkages of phycourobilin. Biochem J 226:723-731. (Pubitemid 15134145)
19. Blot N, et al. (2009) Phycourobilin in trichromatic phycocyanin from oceanic cyano-bacteria is formed post-translationally by a phycoerythrobilin lyase-isomerase. J Biol Chem 284:9290-9298.
20. Dammeyer T, Bagby SC, Sullivan MB, Chisholm SW, Frankenberg-Dinkel N (2008) Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria. Curr Biol 18: 442-448.
21. Frankenberg N, Lagarias JC (2003) Phycocyanobilin:ferredoxin oxidoreductase of Anabaena sp. PCC 7120. Biochemical and spectroscopic. J Biol Chem 278:9219-9226. (Pubitemid 36800404)
22. Huang CY, Chung CI, Lin YC, Hsing YI, Huang AH (2009) Oil bodies and oleosins in Physcomitrella possess characteristics representative of early trends in evolution. Plant Physiol 150:1192-1203.
23. Terry MJ, Kendrick RE (1999) Feedback inhibition of chlorophyll synthesis in the phytochrome chromophore-deficient aurea and yellow-green-2 mutants of tomato. Plant Physiol 119:143-152. (Pubitemid 29384590)
24. Cove DJ, Schild A, Ashton NW, Hartmann E (1978) Genetic and physiological studies of the effect of light on the development of the moss, Physcomitrella patens. Photochem Photobiol 27:249-254.
25. Jenkins GI, Cove DJ (1983) Phototropism and polarotropism of primary chloronemata of the moss Physcomitrella patens: Responses of the wild-type. Planta 158:357-364.
26. Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5:621-628. (Pubitemid 351911867)
27. Tepperman JM, et al. (2004) Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation. Plant J 38:725-739. (Pubitemid 38693453)
28. López-Juez E, et al. (2008) Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis. Plant Cell 20:947-968. (Pubitemid 352843972)
29. Waters MT, et al. (2009) GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis. Plant Cell 21:1109-1128.
30. Cantón FR, Quail PH (1999) Both phyA and phyB mediate light-imposed repression of PHYA gene expression in Arabidopsis. Plant Physiol 121:1207-1216.
31. Li L, Lagarias JC (1992) Phytochrome assembly. Defining chromophore structural requirements for covalent attachment and photoreversibility. J Biol Chem 267: 19204-19210.
32. Lamparter T, Michael N (2005) Agrobacterium phytochrome as an enzyme for the production of ZZE bilins. Biochemistry 44:8461-8469. (Pubitemid 40799926)
33. Beale SI, Cornejo J (1991) Biosynthesis of phycobilins. 3(Z)-phycoerythrobilin and 3(Z)- phycocyanobilin are intermediates in the formation of 3(E)-phycocyanobilin from biliverdin IX alpha. J Biol Chem 266:22333-22340.
34. Ishizuka T, et al. (2011) The cyanobacteriochrome, TePixJ, isomerizes its own chromophore by converting phycocyanobilin to phycoviolobilin. Biochemistry 50:953-961.
35. Rensing SA, et al. (2008) The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319:64-69.
36. Sasidharan R, et al. (2010) Light quality-mediated petiole elongation in Arabidopsis during shade avoidance involves cell wall modification by xyloglucan endotransglucosylase/ hydrolases. Plant Physiol 154:978-990.
37. Imaizumi T, Kadota A, Hasebe M, Wada M (2002) Cryptochrome light signals control development to suppress auxin sensitivity in the moss Physcomitrella patens. Plant Cell 14:373-386. (Pubitemid 34271293)
38. Mathews S (2006) Phytochrome-mediated development in land plants: red light sensing evolves to meet the challenges of changing light environments. Mol Ecol 15: 3483-3503.