-
2
-
-
0028239209
-
Chloroplast and nuclear gene sequences indicate late Pennsylvanian time for the last common ancestor of extant seed plants
-
Savard, L. et al. Chloroplast and nuclear gene sequences indicate late Pennsylvanian time for the last common ancestor of extant seed plants. Proc. Natl Acad. Sci. USA 91, 5163-5167 (1994).
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 5163-5167
-
-
Savard, L.1
-
3
-
-
84867054721
-
Hemisphere-scale differences in conifer evolutionary dynamics
-
Leslie, A. B. et al. Hemisphere-scale differences in conifer evolutionary dynamics. Proc. Natl Acad. Sci. USA 109, 16217-16221 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 16217-16221
-
-
Leslie, A.B.1
-
4
-
-
0004693847
-
Chromosome numbers and phylogeny in the gymnosperms
-
Flory, W. S. Chromosome numbers and phylogeny in the gymnosperms. J. Arnold Arb. 17, 82-87 (1936).
-
(1936)
J. Arnold Arb
, vol.17
, pp. 82-87
-
-
Flory, W.S.1
-
5
-
-
84887212567
-
Evolution of genome size and complexity in Pinus
-
Morse, A. M. et al. Evolution of genome size and complexity in Pinus. PLoS ONE 4, e4332 (2009).
-
(2009)
PLoS ONE
, vol.4
-
-
Morse, A.M.1
-
6
-
-
77954270761
-
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences
-
Kovach, A. et al. The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences. BMC Genomics 11, 420 (2010).
-
(2010)
BMC Genomics
, vol.11
, pp. 420
-
-
Kovach, A.1
-
7
-
-
26944477031
-
Evolution of genome size in conifers
-
Ahuja, M. R. & Neale, D. B. Evolution of genome size in conifers. Silvae Genet. 54, 126-137 (2005).
-
(2005)
Silvae Genet
, vol.54
, pp. 126-137
-
-
Ahuja, M.R.1
Neale, D.B.2
-
8
-
-
84855993168
-
Slow but not low: Genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms
-
Buschiazzo, E., Ritland, C. E., Bohlmann, J. & Ritland, K. Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms. BMC Evol. Biol. 12, 8 (2012).
-
(2012)
BMC Evol. Biol
, vol.12
, pp. 8
-
-
Buschiazzo, E.1
Ritland, C.E.2
Bohlmann, J.3
Ritland, K.4
-
9
-
-
77649176976
-
The contribution of recombination to heterozygosity differs among plant evolutionary lineages and life-forms
-
Jaramillo-Correa, J. P., Verdu, M. & Gonzaez-Martez, S. C. The contribution of recombination to heterozygosity differs among plant evolutionary lineages and life-forms. BMC Evol. Biol. 10, 22 (2010).
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 22
-
-
Jaramillo-Correa, J.P.1
Verdu, M.2
Gonzaez-Martez, S.C.3
-
10
-
-
0032412237
-
Nuclear DNA amounts in gymnosperms
-
Murray, B. G. Nuclear DNA amounts in gymnosperms. Ann. Bot. (Lond.) 82, 3-15 (1998).
-
(1998)
Ann. Bot. (Lond)
, vol.82
, pp. 3-15
-
-
Murray, B.G.1
-
11
-
-
84867088834
-
The oyster genome reveals stress adaptation and complexity of shell formation
-
Zhang, G. et al. The oyster genome reveals stress adaptation and complexity of shell formation. Nature 490, 49-54 (2012).
-
(2012)
Nature
, vol.490
, pp. 49-54
-
-
Zhang, G.1
-
12
-
-
84878409901
-
GAM-NGS: Genomic assemblies merger for next generation sequencing
-
Vicedomini, R., Vezzi, F., Scalabrin, S., Arvestad, L.&Policriti, A.GAM-NGS: genomic assemblies merger for next generation sequencing. BMC Bioinformatics 14, S6 (2013).
-
(2013)
BMC Bioinformatics
, vol.14
-
-
Vicedomini, R.1
Vezzi, F.2
Scalabrin, S.3
Arvestad, L.4
Policriti, A.5
-
13
-
-
84865546399
-
Improved gap size estimation for scaffolding algorithms
-
Sahlin, K., Street, N., Lundeberg, J. & Arvestad, L. Improved gap size estimation for scaffolding algorithms. Bioinformatics 28, 2215-2222 (2012).
-
(2012)
Bioinformatics
, vol.28
, pp. 2215-2222
-
-
Sahlin, K.1
Street, N.2
Lundeberg, J.3
Arvestad, L.4
-
14
-
-
84856557873
-
Feature-by-feature-evaluating de novo sequence assembly
-
Vezzi, F., Narzisi, G. & Mishra, B. Feature-by-feature-evaluating de novo sequence assembly. PLoS ONE 7, e31002 (2012).
-
(2012)
PLoS ONE
, vol.7
-
-
Vezzi, F.1
Narzisi, G.2
Mishra, B.3
-
15
-
-
55649102554
-
A conifer genomics resource of 200,000 spruce (Picea spp ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis)
-
Ralph, S. G. et al. A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis). BMC Genomics 9, 484 (2008).
-
(2008)
BMC Genomics
, vol.9
, pp. 484
-
-
Ralph, S.G.1
-
16
-
-
80055094486
-
-
ed. Logan, D. C Blackwell
-
Mackenzie, S. A. in Plant Mitochondria (ed. Logan, D. C.) 36-49 (Blackwell, 2007).
-
(2007)
Plant Mitochondria
, pp. 36-49
-
-
MacKenzie, S.A.1
-
17
-
-
5144226813
-
Sequence composition and genome organization of maize
-
Messing, J. et al. Sequence composition and genome organization of maize. Proc. Natl Acad. Sci. USA 101, 14349-14354 (2004).
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 14349-14354
-
-
Messing, J.1
-
18
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
Jaillon, O. et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449, 463-467 (2007).
-
(2007)
Nature
, vol.449
, pp. 463-467
-
-
Jaillon, O.1
-
19
-
-
6044226955
-
Consistent overestimation of gene number in complex plant genomes
-
Bennetzen, J. L., Coleman, C., Liu, R., Ma, J. & Ramakrishna, W. Consistent overestimation of gene number in complex plant genomes. Curr. Opin. Plant Biol. 7, 732-736 (2004).
-
(2004)
Curr. Opin. Plant Biol
, vol.7
, pp. 732-736
-
-
Bennetzen, J.L.1
Coleman, C.2
Liu, R.3
Ma, J.4
Ramakrishna, W.5
-
20
-
-
84871822072
-
Inference of genome duplications from age distributions revisited
-
Vanneste, K., Van de Peer, Y. & Maere, S. Inference of genome duplications from age distributions revisited. Mol. Biol. Evol. 30, 177-190 (2013).
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 177-190
-
-
Vanneste, K.1
Van De Peer, Y.2
Maere, S.3
-
21
-
-
79955630390
-
Ancestral polyploidy in seed plants and angiosperms
-
Jiao, Y. et al. Ancestral polyploidy in seed plants and angiosperms. Nature 473, 97-100 (2011).
-
(2011)
Nature
, vol.473
, pp. 97-100
-
-
Jiao, Y.1
-
22
-
-
50249129581
-
Evolutionary aspects of functional and pseudogene members of the phytochrome gene family in Scots pine
-
Garc-Gil, M. R. Evolutionary aspects of functional and pseudogene members of the phytochrome gene family in Scots pine. J. Mol. Evol. 67, 222-232 (2008).
-
(2008)
J. Mol. Evol
, vol.67
, pp. 222-232
-
-
Garc-Gil, M.R.1
-
23
-
-
79251646494
-
Adventures in the enormous: A 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine
-
Magbanua, Z. V. et al. Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine. PLoS ONE 6, e16214 (2011).
-
(2011)
PLoS ONE
, vol.6
-
-
Magbanua, Z.V.1
-
24
-
-
84865839598
-
Long noncoding RNAs are rarely translated in two human cell lines
-
Bafai, B. et al. Long noncoding RNAs are rarely translated in two human cell lines. Genome Res. 22, 1646-1657 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 1646-1657
-
-
Bafai, B.1
-
25
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien, T. et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 22, 1775-1789 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
-
26
-
-
47949086531
-
Conifers have a uniquesmall RNA silencing signature
-
Dolgosheina, E. V. et al. Conifers have a uniquesmall RNA silencing signature.RNA 14, 1508-1515 (2008).
-
(2008)
RNA
, vol.14
, pp. 1508-1515
-
-
Dolgosheina, E.V.1
-
27
-
-
41649102715
-
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
-
Morin, R. D. et al. Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res. 18, 571-584 (2008).
-
(2008)
Genome Res
, vol.18
, pp. 571-584
-
-
Morin, R.D.1
-
28
-
-
84864950928
-
Identification and characterization of small non-codingRNAs from Chinese fir by high throughput sequencing
-
Wan, L.-C. et al. Identification and characterization of small non-codingRNAs from Chinese fir by high throughput sequencing. BMC Plant Biol. 12, 146 (2012).
-
(2012)
BMC Plant Biol
, vol.12
, pp. 146
-
-
Wan, L.-C.1
-
29
-
-
84871918724
-
Dynamic expression of small RNA populations in larch (Larix leptolepis
-
Zhang, J. et al. Dynamic expression of small RNA populations in larch (Larix leptolepis). Planta 237, 89-101 (2013).
-
(2013)
Planta
, vol.237
, pp. 89-101
-
-
Zhang, J.1
-
30
-
-
34249330696
-
Epigenetic inheritance in plants
-
Henderson, I. R. & Jacobsen, S. E. Epigenetic inheritance in plants. Nature 447, 418-424 (2007).
-
(2007)
Nature
, vol.447
, pp. 418-424
-
-
Henderson, I.R.1
Jacobsen, S.E.2
-
31
-
-
0032413101
-
Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons
-
Sanmiguel, P. & Bennetzen, J. L. Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann. Bot. (Lond.) 82, 37-44 (1998).
-
(1998)
Ann. Bot. (Lond)
, vol.82
, pp. 37-44
-
-
Sanmiguel, P.1
Bennetzen, J.L.2
-
32
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker, T. et al. A unified classification system for eukaryotic transposable elements. Nature Rev. Genet. 8, 973-982 (2007).
-
(2007)
Nature Rev. Genet
, vol.8
, pp. 973-982
-
-
Wicker, T.1
-
33
-
-
0036061848
-
Genome size reduction through illegitimate recombinationcounteracts genome expansion in Arabidopsis
-
Devos, K. M., Brown, J. K. M. & Bennetzen, J. L. Genome size reduction through illegitimate recombinationcounteracts genome expansion in Arabidopsis. Genome Res. 12, 1075-1079 (2002).
-
(2002)
Genome Res
, vol.12
, pp. 1075-1079
-
-
Devos, K.M.1
Brown, J.K.M.2
Bennetzen, J.L.3
-
34
-
-
0037387430
-
Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L
-
Vitte, C. & Panaud, O. Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L. Mol. Biol. Evol. 20, 528-540 (2003).
-
(2003)
Mol. Biol. Evol
, vol.20
, pp. 528-540
-
-
Vitte, C.1
Panaud, O.2
-
35
-
-
0032718558
-
Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum
-
Vicient, C. M. et al. Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum. Plant Cell 11, 1769-1784 (1999).
-
(1999)
Plant Cell
, vol.11
, pp. 1769-1784
-
-
Vicient, C.M.1
-
36
-
-
79961187177
-
Evolution of the PEBP gene family in plants: Functional diversification in seed plant evolution
-
Karlgren, A. et al. Evolution of the PEBP gene family in plants: functional diversification in seed plant evolution. Plant Physiol. 156, 1967-1977 (2011).
-
(2011)
Plant Physiol
, vol.156
, pp. 1967-1977
-
-
Karlgren, A.1
-
37
-
-
84868519956
-
Analysis of conifer FLOWERING LOCUS T/TERMINAL FLOWER1-like genes provides evidence for dramatic biochemical evolution in the angiospermFT lineage
-
Klintena, M., Pin, P. A., Benlloch, R., Ingvarsson, P. K. & Nilsson, O. Analysis of conifer FLOWERING LOCUS T/TERMINAL FLOWER1-like genes provides evidence for dramatic biochemical evolution in the angiospermFT lineage. NewPhytol. 196, 1260-1273 (2012).
-
(2012)
NewPhytol.
, vol.196
, pp. 1260-1273
-
-
Klintena, M.1
Pin, P.A.2
Benlloch, R.3
Ingvarsson, P.K.4
Nilsson, O.5
-
38
-
-
77958191209
-
A hitchhiker's guide to the MADS world of plants
-
Gramzow, L. & Theissen, G. A hitchhiker's guide to the MADS world of plants. Genome Biol. 11, 214 (2010).
-
(2010)
Genome Biol
, vol.11
, pp. 214
-
-
Gramzow, L.1
Theissen, G.2
-
39
-
-
84864818803
-
Developmental and evolutionary diversity of plant MADSdomain factors: Insights from recent studies
-
Smaczniak, C. et al. Developmental and evolutionary diversity of plant MADSdomain factors: insights from recent studies. Development 139, 3081-3098 (2012).
-
(2012)
Development
, vol.139
, pp. 3081-3098
-
-
Smaczniak, C.1
-
40
-
-
23944449143
-
Transcription switches for protoxylem and metaxylem vessel formation
-
Kubo, M. et al. Transcription switches for protoxylem and metaxylem vessel formation. Genes Dev. 19, 1855-1860 (2005).
-
(2005)
Genes Dev
, vol.19
, pp. 1855-1860
-
-
Kubo, M.1
-
41
-
-
33749392949
-
Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice
-
Piegu, B. et al. Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res. 16, 1262-1269 (2006).
-
(2006)
Genome Res
, vol.16
, pp. 1262-1269
-
-
Piegu, B.1
-
42
-
-
33749389724
-
Differential lineagespecific amplification of transposable elements is responsible for genome size variation in Gossypium
-
Hawkins, J. S., Kim, H., Nason, J. D., Wing, R. A. & Wendel, J. F. Differential lineagespecific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Res. 16, 1252-1261 (2006).
-
(2006)
Genome Res
, vol.16
, pp. 1252-1261
-
-
Hawkins, J.S.1
Kim, H.2
Nason, J.D.3
Wing, R.A.4
Wendel, J.F.5
-
43
-
-
21644437476
-
Mechanisms of recent genome size variation in flowering plants
-
Bennetzen, J. L., Ma, J. & Devos, K. M. Mechanisms of recent genome size variation in flowering plants. Ann. Bot. (Lond.) 95, 127-132 (2005).
-
(2005)
Ann. Bot. (Lond)
, vol.95
, pp. 127-132
-
-
Bennetzen, J.L.1
Ma, J.2
Devos, K.M.3
-
44
-
-
84867833217
-
A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnospermlineage leading to extant conifers
-
Pavy, N. et al. A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnospermlineage leading to extant conifers. BMC Biol. 10, 84 (2012).
-
(2012)
BMC Biol
, vol.10
, pp. 84
-
-
Pavy, N.1
-
45
-
-
0000637348
-
Doplants have a one way ticket to genomic obesity?
-
Bennetzen, J. L.&Kellogg, E. A.Doplants have a one way ticket to genomic obesity? Plant Cell 9, 1509-1514 (1997).
-
(1997)
Plant Cell
, vol.9
, pp. 1509-1514
-
-
Bennetzen, J.L.1
Kellogg, E.A.2
-
46
-
-
70549110074
-
The flowering world: A tale of duplications
-
Van de Peer, Y., Fawcett, J. A., Proost, S., Sterck, L. & Vandepoele, K. The flowering world: a tale of duplications. Trends Plant Sci. 14, 680-688 (2009).
-
(2009)
Trends Plant Sci
, vol.14
, pp. 680-688
-
-
Van De Peer, Y.1
Fawcett, J.A.2
Proost, S.3
Sterck, L.4
Vandepoele, K.5
-
47
-
-
84868534630
-
Presidential address Transposable elements, epigenetics, and genome evolution
-
Fedoroff, N. V. Presidential address. Transposable elements, epigenetics, and genome evolution. Science 338, 758-767 (2012).
-
(2012)
Science
, vol.338
, pp. 758-767
-
-
Fedoroff, N.V.1
-
48
-
-
79957595723
-
A mystery unveiled
-
Van de Peer, Y. A mystery unveiled. Genome Biol. 12, 113 (2011).
-
(2011)
Genome Biol
, vol.12
, pp. 113
-
-
Van De Peer, Y.1
-
49
-
-
60249085527
-
Polyploidy and angiosperm diversification
-
Soltis, D. E. et al. Polyploidy and angiosperm diversification. Am. J. Bot. 96, 336-348 (2009).
-
(2009)
Am. J. Bot
, vol.96
, pp. 336-348
-
-
Soltis, D.E.1
-
50
-
-
4344616881
-
Rapid recent growth and divergence of rice nuclear genomes
-
Ma, J. & Bennetzen, J. L. Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl Acad. Sci. USA 101, 12404-12410 (2004).
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 12404-12410
-
-
Ma, J.1
Bennetzen, J.L.2
|