메뉴 건너뛰기




Volumn 105, Issue 39, 2008, Pages 14958-14963

Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

Author keywords

miRNA; mop1; rdr2; Small RNA

Indexed keywords

MICRORNA; SMALL INTERFERING RNA; ARABIDOPSIS PROTEIN; RDR2 PROTEIN, ARABIDOPSIS; RNA DIRECTED RNA POLYMERASE; VEGETABLE PROTEIN;

EID: 54449085115     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0808066105     Document Type: Article
Times cited : (174)

References (31)
  • 1
    • 23944483216 scopus 로고    scopus 로고
    • Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs
    • Gasciolli V, Mallory AC, Bartel DP, Vaucheret H (2005) Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol 15:1494-1500.
    • (2005) Curr Biol , vol.15 , pp. 1494-1500
    • Gasciolli, V.1    Mallory, A.C.2    Bartel, D.P.3    Vaucheret, H.4
  • 2
    • 24644481318 scopus 로고    scopus 로고
    • DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana
    • Xie Z, Allen E, Wilken A, Carrington JC (2005) DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc Natl Acad Sci USA 102:12984-12989.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 12984-12989
    • Xie, Z.1    Allen, E.2    Wilken, A.3    Carrington, J.C.4
  • 3
    • 24944491201 scopus 로고    scopus 로고
    • A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis
    • Yoshikawa M, Peragine A, Park MY, Poethig RS (2005) A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev 19:2164-2175.
    • (2005) Genes Dev , vol.19 , pp. 2164-2175
    • Yoshikawa, M.1    Peragine, A.2    Park, M.Y.3    Poethig, R.S.4
  • 4
    • 29244490062 scopus 로고    scopus 로고
    • Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
    • Borsani O, Zhu J, Verslues PE, Sunkar R, Zhu JK (2005) Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 123:1279-1291.
    • (2005) Cell , vol.123 , pp. 1279-1291
    • Borsani, O.1    Zhu, J.2    Verslues, P.E.3    Sunkar, R.4    Zhu, J.K.5
  • 5
    • 33845202133 scopus 로고    scopus 로고
    • A pathogen-inducible endogenous siRNA in plant immunity
    • Katiyar-Agarwal S, et al. (2006) A pathogen-inducible endogenous siRNA in plant immunity. Proc Natl Acad Sci USA 103:18002-18007.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 18002-18007
    • Katiyar-Agarwal, S.1
  • 6
    • 42449150879 scopus 로고    scopus 로고
    • Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
    • Lu C, et al. (2008) Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Proc Natl Acad Sci USA 105:4951-4956.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 4951-4956
    • Lu, C.1
  • 7
    • 33745271035 scopus 로고    scopus 로고
    • Functions of microRNAs and related small RNAs in plants
    • Mallory AC, Vaucheret H (2006) Functions of microRNAs and related small RNAs in plants. Nat Genet 38:S31-S36.
    • (2006) Nat Genet , vol.38
    • Mallory, A.C.1    Vaucheret, H.2
  • 8
    • 24644490196 scopus 로고    scopus 로고
    • Elucidation of the small RNA component of the transcriptome
    • Lu C, et al. (2005) Elucidation of the small RNA component of the transcriptome. Science 309:1567-1569.
    • (2005) Science , vol.309 , pp. 1567-1569
    • Lu, C.1
  • 9
    • 33645528966 scopus 로고    scopus 로고
    • Post-transcriptional small RNA pathways in plants: Mechanisms and regulations
    • Vaucheret H (2006) Post-transcriptional small RNA pathways in plants: Mechanisms and regulations. Genes Dev 20:759-771.
    • (2006) Genes Dev , vol.20 , pp. 759-771
    • Vaucheret, H.1
  • 10
    • 34147098535 scopus 로고    scopus 로고
    • An expression atlas of rice mRNA and small RNA
    • Nobuta K, et al. (2007) An expression atlas of rice mRNA and small RNA. Nat Biotechnol 25:473-477.
    • (2007) Nat Biotechnol , vol.25 , pp. 473-477
    • Nobuta, K.1
  • 11
    • 33847031363 scopus 로고    scopus 로고
    • Paramutation: From maize to mice
    • Chandler VL (2007) Paramutation: From maize to mice. Cell 128:641-645.
    • (2007) Cell , vol.128 , pp. 641-645
    • Chandler, V.L.1
  • 12
    • 0036682518 scopus 로고    scopus 로고
    • Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation
    • Stam M, Belele C, Dorweiler JE, Chandler VL (2002) Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation. Genes Dev 16:1906-1918.
    • (2002) Genes Dev , vol.16 , pp. 1906-1918
    • Stam, M.1    Belele, C.2    Dorweiler, J.E.3    Chandler, V.L.4
  • 13
    • 0034353111 scopus 로고    scopus 로고
    • mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci
    • Dorweiler JE, et al. (2000) mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci. Plant Cell 12:2101-2118.
    • (2000) Plant Cell , vol.12 , pp. 2101-2118
    • Dorweiler, J.E.1
  • 14
    • 0037197916 scopus 로고    scopus 로고
    • Amutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing
    • Lisch D, Carey CC, Dorweiler JE, Chandler VL (2002) Amutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing. Proc Natl Acad Sci USA 99:6130-6135.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 6130-6135
    • Lisch, D.1    Carey, C.C.2    Dorweiler, J.E.3    Chandler, V.L.4
  • 15
    • 33746459425 scopus 로고    scopus 로고
    • Transcriptionally silenced transgenes in maize are activated by three mutations defective in paramutation
    • McGinnis KM, Springer C, Lin Y, Carey CC, Chandler V (2006) Transcriptionally silenced transgenes in maize are activated by three mutations defective in paramutation. Genetics 173:1637-1647.
    • (2006) Genetics , vol.173 , pp. 1637-1647
    • McGinnis, K.M.1    Springer, C.2    Lin, Y.3    Carey, C.C.4    Chandler, V.5
  • 16
    • 33746363573 scopus 로고    scopus 로고
    • An RNA-dependent RNA polymerase is required for paramutation in maize
    • Alleman M, et al. (2006) An RNA-dependent RNA polymerase is required for paramutation in maize. Nature 442:295-298.
    • (2006) Nature , vol.442 , pp. 295-298
    • Alleman, M.1
  • 17
    • 33745279055 scopus 로고    scopus 로고
    • Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing, and DNA methylation patterning
    • Henderson IR, et al. (2006) Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing, and DNA methylation patterning. Nat Genet 38:721-725.
    • (2006) Nat Genet , vol.38 , pp. 721-725
    • Henderson, I.R.1
  • 18
    • 33749404806 scopus 로고    scopus 로고
    • MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    • Lu C, et al. (2006) MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res 16:1276-1288.
    • (2006) Genome Res , vol.16 , pp. 1276-1288
    • Lu, C.1
  • 19
    • 19344374219 scopus 로고    scopus 로고
    • Genetic and functional diversification of small RNA pathways in plants
    • Xie Z, et al. (2004) Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2:E104.
    • (2004) PLoS Biol , vol.2
    • Xie, Z.1
  • 20
    • 33749387064 scopus 로고    scopus 로고
    • Uneven chromosome contraction and expansion in the maize genome
    • Bruggmann R, et al. (2006) Uneven chromosome contraction and expansion in the maize genome. Genome Res 16:1241-1251.
    • (2006) Genome Res , vol.16 , pp. 1241-1251
    • Bruggmann, R.1
  • 21
    • 47949086531 scopus 로고    scopus 로고
    • Conifers have a unique small RNA silencing signature
    • Dolgosheina EV, et al. (2008) Conifers have a unique small RNA silencing signature. RNA 14:1508-1515.
    • (2008) RNA , vol.14 , pp. 1508-1515
    • Dolgosheina, E.V.1
  • 22
    • 33644795388 scopus 로고    scopus 로고
    • Loss-of-function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice
    • Liu B, et al. (2005) Loss-of-function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice. Plant Physiol 139:296-305.
    • (2005) Plant Physiol , vol.139 , pp. 296-305
    • Liu, B.1
  • 23
    • 33646082498 scopus 로고    scopus 로고
    • The evolution and diversification of Dicers in plants
    • Margis R, et al. (2006) The evolution and diversification of Dicers in plants. FEBS Lett 580:2442-2450.
    • (2006) FEBS Lett , vol.580 , pp. 2442-2450
    • Margis, R.1
  • 24
    • 33745916446 scopus 로고    scopus 로고
    • Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense
    • Deleris A, et al. (2006) Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313:68-71.
    • (2006) Science , vol.313 , pp. 68-71
    • Deleris, A.1
  • 25
    • 10044244768 scopus 로고    scopus 로고
    • siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis
    • Liu J, He Y, Amasino R, Chen X (2004) siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis. Genes Dev 18:2873-2878.
    • (2004) Genes Dev , vol.18 , pp. 2873-2878
    • Liu, J.1    He, Y.2    Amasino, R.3    Chen, X.4
  • 26
    • 33644769152 scopus 로고    scopus 로고
    • The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize
    • Woodhouse MR, Freeling M, Lisch D (2006) The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize. Genetics 172:579-592.
    • (2006) Genetics , vol.172 , pp. 579-592
    • Woodhouse, M.R.1    Freeling, M.2    Lisch, D.3
  • 27
    • 3342927934 scopus 로고    scopus 로고
    • Role of transposable elements in heterochromatin and epigenetic control
    • Lippman Z, et al. (2004) Role of transposable elements in heterochromatin and epigenetic control. Nature 430:471-476.
    • (2004) Nature , vol.430 , pp. 471-476
    • Lippman, Z.1
  • 28
    • 37249050851 scopus 로고    scopus 로고
    • Genetic interactions between DNA demethylation and methylation in Arabidopsis
    • Penterman J, Uzawa R, Fischer RL (2007) Genetic interactions between DNA demethylation and methylation in Arabidopsis. Plant Physiol 145:1549-1557.
    • (2007) Plant Physiol , vol.145 , pp. 1549-1557
    • Penterman, J.1    Uzawa, R.2    Fischer, R.L.3
  • 30
    • 34548687914 scopus 로고    scopus 로고
    • Construction of small RNA cDNA libraries for deep sequencing
    • Lu C, Meyers BC, Green PJ (2007) Construction of small RNA cDNA libraries for deep sequencing. Methods 43:110-117.
    • (2007) Methods , vol.43 , pp. 110-117
    • Lu, C.1    Meyers, B.C.2    Green, P.J.3
  • 31
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A (2000) EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet 16:276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.