-
1
-
-
84890072854
-
Exonic transcription factor binding directs codon choice and affects protein evolution
-
Stergachis,A.B., Haugen,E., Shafer,A., Fu,W., Vernot,B., Reynolds,A., Raubitschek,A., Ziegler,S., LeProust,E.M., Akey,J.M. et al. (2013) Exonic transcription factor binding directs codon choice and affects protein evolution. Science., 342, 1367-1372.
-
(2013)
Science.
, vol.342
, pp. 1367-1372
-
-
Stergachis, A.B.1
Haugen, E.2
Shafer, A.3
Fu, W.4
Vernot, B.5
Reynolds, A.6
Raubitschek, A.7
Ziegler, S.8
LeProust, E.M.9
Akey, J.M.10
-
2
-
-
77956694182
-
New roles for codon usage
-
Weygand-Durasevic,I. and Ibba,M. (2010) New roles for codon usage. Science, 329, 1473-1474.
-
(2010)
Science
, vol.329
, pp. 1473-1474
-
-
Weygand-Durasevic, I.1
Ibba, M.2
-
3
-
-
84860231100
-
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
-
Li,G.W., Oh,E. and Weissman,J.S. (2012) The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature, 484, 538-541.
-
(2012)
Nature
, vol.484
, pp. 538-541
-
-
Li, G.W.1
Oh, E.2
Weissman, J.S.3
-
4
-
-
77951734603
-
A role for codon order in translation dynamics
-
Cannarozzi,G., Schraudolph,N.N., Faty,M., von Rohr,P., Friberg,M.T., Roth,A.C., Gonnet,P., Gonnet,G. and Barral,Y. (2010) A role for codon order in translation dynamics. Cell, 141, 355-367.
-
(2010)
Cell
, vol.141
, pp. 355-367
-
-
Cannarozzi, G.1
Schraudolph, N.N.2
Faty, M.3
Von Rohr, P.4
Friberg, M.T.5
Roth, A.C.6
Gonnet, P.7
Gonnet, G.8
Barral, Y.9
-
5
-
-
77958082013
-
Overlapping codes within protein-coding sequences
-
Itzkovitz,S., Hodis,E. and Segal,E. (2010) Overlapping codes within protein-coding sequences. Genome Res., 20, 1582-1589.
-
(2010)
Genome Res.
, vol.20
, pp. 1582-1589
-
-
Itzkovitz, S.1
Hodis, E.2
Segal, E.3
-
6
-
-
77951715627
-
An evolutionarily conserved mechanism for controlling the efficiency of protein translation
-
Tuller,T., Carmi,A., Vestsigian,K., Navon,S., Dorfan,Y., Zaborske,J., Pan,T., Dahan,O., Furman,I. and Pilpel,Y. (2010) An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell, 141, 344-354.
-
(2010)
Cell
, vol.141
, pp. 344-354
-
-
Tuller, T.1
Carmi, A.2
Vestsigian, K.3
Navon, S.4
Dorfan, Y.5
Zaborske, J.6
Pan, T.7
Dahan, O.8
Furman, I.9
Pilpel, Y.10
-
7
-
-
77952029221
-
Deciphering the splicing code
-
Barash,Y., Calarco,J.A., Gao,W., Pan,Q., Wang,X., Shai,O., Blencowe,B.J. and Frey,B.J. (2010) Deciphering the splicing code. Nature., 465, 53-59.
-
(2010)
Nature.
, vol.465
, pp. 53-59
-
-
Barash, Y.1
Calarco, J.A.2
Gao, W.3
Pan, Q.4
Wang, X.5
Shai, O.6
Blencowe, B.J.7
Frey, B.J.8
-
8
-
-
78650304100
-
Synonymous but not the same: The causes and consequences of codon bias
-
Plotkin,J.B. and Kudla,G. (2010) Synonymous but not the same: the causes and consequences of codon bias. Nat. Rev. Genet., 12, 32-42.
-
(2010)
Nat. Rev. Genet.
, vol.12
, pp. 32-42
-
-
Plotkin, J.B.1
Kudla, G.2
-
9
-
-
31144465926
-
Hearing silence: Non-neutral evolution at synonymous sites in mammals
-
Chamary,J.V., Parmley,J.L. and Hurst,L.D. (2006) Hearing silence: non-neutral evolution at synonymous sites in mammals. Nat. Rev. Genet., 7, 98-108.
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 98-108
-
-
Chamary, J.V.1
Parmley, J.L.2
Hurst, L.D.3
-
10
-
-
80052964856
-
Understanding the contribution of synonymous mutations to human disease
-
Sauna,Z.E. and Kimchi-Sarfaty,C. (2013) Understanding the contribution of synonymous mutations to human disease. Nat. Rev. Genet., 12, 683-691.
-
(2013)
Nat. Rev. Genet.
, vol.12
, pp. 683-691
-
-
Sauna, Z.E.1
Kimchi-Sarfaty, C.2
-
12
-
-
79954456859
-
Determinants of translation efficiency and accuracy
-
Gingold,H. and Pilpel,Y. (2011) Determinants of translation efficiency and accuracy. Mol. Syst. Biol., 7, 481.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 481
-
-
Gingold, H.1
Pilpel, Y.2
-
13
-
-
84867732569
-
Speeding with control: Codon usage, tRNAs, and ribosomes
-
Novoa,E.M. and Ribas de Pouplana,L. (2012) Speeding with control: codon usage, tRNAs, and ribosomes. Trends Genet., 28, 574-581.
-
(2012)
Trends Genet.
, vol.28
, pp. 574-581
-
-
Novoa, E.M.1
Ribas De Pouplana, L.2
-
14
-
-
77949456534
-
Increased incidence of rare codon clusters at 5and 3gene termini: Implications for function
-
Clarke,T.F. and Clark,P.L. (2010) Increased incidence of rare codon clusters at 5and 3gene termini: implications for function. BMC Genomics, 11, 118.
-
(2010)
BMC Genomics
, vol.11
, pp. 118
-
-
Clarke, T.F.1
Clark, P.L.2
-
15
-
-
0036908375
-
Distribution of rare triplets along mRNA and their relation to protein folding
-
Makhoul,C.H. and Trifonov,E.N. (2002) Distribution of rare triplets along mRNA and their relation to protein folding. J. Biomol. Struct. Dyn., 20, 413-420.
-
(2002)
J. Biomol. Struct. Dyn.
, vol.20
, pp. 413-420
-
-
Makhoul, C.H.1
Trifonov, E.N.2
-
16
-
-
11244324849
-
Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes
-
Qin,H., Wu,W.B., Comeron,J.M., Kreitman,M. and Li,W.H. (2004) Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes. Genetics, 168, 2245-2260.
-
(2004)
Genetics
, vol.168
, pp. 2245-2260
-
-
Qin, H.1
Wu, W.B.2
Comeron, J.M.3
Kreitman, M.4
Li, W.H.5
-
17
-
-
0023813828
-
Codon usage and intragenic position
-
Bulmer,M. (1988) Codon usage and intragenic position. J. Theor. Biol., 133, 67-71.
-
(1988)
J. Theor. Biol.
, vol.133
, pp. 67-71
-
-
Bulmer, M.1
-
18
-
-
84886302057
-
Causes and effects of N-terminal codon bias in bacterial genes
-
Goodman,D.B., Church,G.M. and Kosuri,S. (2013) Causes and effects of N-terminal codon bias in bacterial genes. Science., 342, 475-479.
-
(2013)
Science.
, vol.342
, pp. 475-479
-
-
Goodman, D.B.1
Church, G.M.2
Kosuri, S.3
-
19
-
-
64849114915
-
Coding-sequence determinants of gene expression in Escherichia coli
-
Kudla,G., Murray,A.W., Tollervey,D. and Plotkin,J.B. (2009) Coding-sequence determinants of gene expression in Escherichia coli. Science, 324, 255-258.
-
(2009)
Science
, vol.324
, pp. 255-258
-
-
Kudla, G.1
Murray, A.W.2
Tollervey, D.3
Plotkin, J.B.4
-
20
-
-
77649245858
-
Translation efficiency is determined by both codon bias and folding energy
-
U.S.A.
-
Tuller,T., Waldman,Y.Y., Kupiec,M. and Ruppin,E. (2010) Translation efficiency is determined by both codon bias and folding energy. Proc. Natl. Acad. Sci. U.S.A., 107, 3645-3650.
-
(2010)
Proc. Natl. Acad. Sci.
, vol.107
, pp. 3645-3650
-
-
Tuller, T.1
Waldman, Y.Y.2
Kupiec, M.3
Ruppin, E.4
-
21
-
-
77649198142
-
A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes
-
Gu,W., Zhou,T. and Wilke,C.O. (2010) A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes. PLoS Comput. Biol. 6, 1-8.
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. 1-8
-
-
Gu, W.1
Zhou, T.2
Wilke, C.O.3
-
22
-
-
27144555357
-
Regulation of translation via mRNA structure in prokaryotes and eukaryotes
-
Kozak,M. (2005) Regulation of translation via mRNA structure in prokaryotes and eukaryotes. Gene, 361, 13-37.
-
(2005)
Gene
, vol.361
, pp. 13-37
-
-
Kozak, M.1
-
23
-
-
77958493102
-
The mRNA landscape at yeast translation initiation sites
-
Robbins-Pianka,A., Rice,M.D. and Weir,M.P. (2010) The mRNA landscape at yeast translation initiation sites. Bioinformatics., 26, 2651-2655.
-
(2010)
Bioinformatics.
, vol.26
, pp. 2651-2655
-
-
Robbins-Pianka, A.1
Rice, M.D.2
Weir, M.P.3
-
24
-
-
0027432923
-
Reduced synonymous substitution rate at the start of enterobacterial genes
-
Eyre-Walker,A. and Bulmer,M. (1993) Reduced synonymous substitution rate at the start of enterobacterial genes. Nucleic Acids Res., 21, 4599-4603.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4599-4603
-
-
Eyre-Walker, A.1
Bulmer, M.2
-
25
-
-
0016154301
-
The 3-terminal sequence of Escherichia coli 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites
-
U.S.A.
-
Shine,J. and Dalgarno,L. (1974) The 3-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc. Natl. Acad. Sci. U.S.A., 71, 1342-1346.
-
(1974)
Proc. Natl. Acad. Sci.
, vol.71
, pp. 1342-1346
-
-
Shine, J.1
Dalgarno, L.2
-
26
-
-
0022552131
-
Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes
-
Kozak,M. (1986) Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell, 44, 283-292.
-
(1986)
Cell
, vol.44
, pp. 283-292
-
-
Kozak, M.1
-
27
-
-
0023663451
-
Compilation and comparison of the sequence context around the AUG startcodons in Saccharomyces cerevisiae mRNAs
-
Hamilton,R., Watanabe,C.K. and de Boer,H.A. (1987) Compilation and comparison of the sequence context around the AUG startcodons in Saccharomyces cerevisiae mRNAs. Nucleic Acids Res., 15, 3581-3593.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 3581-3593
-
-
Hamilton, R.1
Watanabe, C.K.2
De Boer, H.A.3
-
28
-
-
77957240693
-
Multifactorial determinants of protein expression in prokaryotic open reading frames
-
Allert,M., Cox,J.C. and Hellinga,H.W. (2010) Multifactorial determinants of protein expression in prokaryotic open reading frames. J. Mol. Biol., 402, 905-918.
-
(2010)
J. Mol. Biol.
, vol.402
, pp. 905-918
-
-
Allert, M.1
Cox, J.C.2
Hellinga, H.W.3
-
29
-
-
84879345901
-
Rate-limiting steps in yeast protein translation
-
Shah,P., Ding,Y., Niemczyk,M., Kudla,G. and Plotkin,J.B. (2013) Rate-limiting steps in yeast protein translation. Cell., 153, 1589-1601.
-
(2013)
Cell.
, vol.153
, pp. 1589-1601
-
-
Shah, P.1
Ding, Y.2
Niemczyk, M.3
Kudla, G.4
Plotkin, J.B.5
-
30
-
-
84945211771
-
Systematic study of synthetic transcript features in S
-
press
-
Ben Yehezkel,T., Atar,S., Shapiro,E. and Tuller,T. (2014) Systematic study of synthetic transcript features in S. cerevisiae exposes gene-expression determinants, in press.
-
(2014)
Cerevisiae Exposes Gene-expression Determinants
-
-
Ben Yehezkel, T.1
Atar, S.2
Shapiro, E.3
Tuller, T.4
-
31
-
-
70349199628
-
Design parameters to control synthetic gene expression in Escherichia coli
-
Welch,M., Govindarajan,S., Ness,J.E., Villalobos,A., Gurney,A., Minshull,J. and Gustafsson,C. (2009) Design parameters to control synthetic gene expression in Escherichia coli. PLoS One, 4, 1-10.
-
(2009)
PLoS One
, vol.4
, pp. 1-10
-
-
Welch, M.1
Govindarajan, S.2
Ness, J.E.3
Villalobos, A.4
Gurney, A.5
Minshull, J.6
Gustafsson, C.7
-
32
-
-
84879654928
-
Efficient translation initiation dictates codon usage at gene start
-
Bentele,K., Saffert,P., Rauscher,R., Ignatova,Z. and Bluthgen,N. (2013) Efficient translation initiation dictates codon usage at gene start. Mol. Syst. Biol., 9, 675.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 675
-
-
Bentele, K.1
Saffert, P.2
Rauscher, R.3
Ignatova, Z.4
Bluthgen, N.5
-
33
-
-
80155213999
-
Composite effects of gene determinants on the translation speed and density of ribosomes
-
Tuller,T., Veksler-Lublinsky,I., Gazit,N., Kupiec,M., Ruppin,E. and Ziv-Ukelson,M. (2011) Composite effects of gene determinants on the translation speed and density of ribosomes. Genome Biol., 12, R110.
-
(2011)
Genome Biol.
, vol.12
, pp. R110
-
-
Tuller, T.1
Veksler-Lublinsky, I.2
Gazit, N.3
Kupiec, M.4
Ruppin, E.5
Ziv-Ukelson, M.6
-
34
-
-
0025107694
-
Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes
-
U.S.A.
-
Kozak,M. (1990) Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes. Proc. Natl. Acad.Sci. U.S.A., 87, 8301-8305.
-
(1990)
Proc. Natl. Acad.Sci.
, vol.87
, pp. 8301-8305
-
-
Kozak, M.1
-
35
-
-
84880766519
-
New universal rules of eukaryotic translation initiation fidelity
-
Zur,H. and Tuller,T. (2013) New universal rules of eukaryotic translation initiation fidelity. PLoS Comput. Biol., 9, e1003136.
-
(2013)
PLoS Comput. Biol.
, vol.9
, pp. e1003136
-
-
Zur, H.1
Tuller, T.2
-
36
-
-
35548935529
-
AUG hairpin: Prediction of a downstream secondary structure influencing the recognition of a translation start site
-
Kochetov,A.V., Palyanov,A., Titov,I.I., Grigorovich,D., Sarai,A. and Kolchanov,A. (2007) AUG hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. BMC Bioinformatics., 8, 318.
-
(2007)
BMC Bioinformatics.
, vol.8
, pp. 318
-
-
Kochetov, A.V.1
Palyanov, A.2
Titov, I.I.3
Grigorovich, D.4
Sarai, A.5
Kolchanov, A.6
-
37
-
-
84945195432
-
Deciphering the rules by which dynamics of mRNA secondary structure affect translation efficiency in Saccharomyces cerevisiae
-
Mao,Y., Liu,H., Liu,Y. and Tao,S. (2014) Deciphering the rules by which dynamics of mRNA secondary structure affect translation efficiency in Saccharomyces cerevisiae. Nucleic Acids Res., 21, 21.
-
(2014)
Nucleic Acids Res.
, vol.21
, pp. 21
-
-
Mao, Y.1
Liu, H.2
Liu, Y.3
Tao, S.4
-
38
-
-
77956663124
-
Differential arginylation of actin isoforms is regulated by coding sequence-dependent degradation
-
Zhang,F., Saha,S., Shabalina,S.A. and Kashina,A. (2010) Differential arginylation of actin isoforms is regulated by coding sequence-dependent degradation. Science, 329, 1534-1537.
-
(2010)
Science
, vol.329
, pp. 1534-1537
-
-
Zhang, F.1
Saha, S.2
Shabalina, S.A.3
Kashina, A.4
-
39
-
-
0025272837
-
Cloning and functional analysis of the arginyl-tRNA-protein transferase gene ATE1 of Saccharomyces cerevisiae
-
Balzi,E., Choder,M., Chen,W.N., Varshavsky,A. and Goffeau,A. (1990) Cloning and functional analysis of the arginyl-tRNA-protein transferase gene ATE1 of Saccharomyces cerevisiae. J. Biol. Chem., 265, 7464-7471.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 7464-7471
-
-
Balzi, E.1
Choder, M.2
Chen, W.N.3
Varshavsky, A.4
Goffeau, A.5
-
40
-
-
77951722801
-
How the sequence of a gene can tune its translation
-
Fredrick,K. and Ibba,M. (2010) How the sequence of a gene can tune its translation. Cell, 141, 227-229.
-
(2010)
Cell
, vol.141
, pp. 227-229
-
-
Fredrick, K.1
Ibba, M.2
-
41
-
-
84873570699
-
Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding
-
Pechmann,S. and Frydman,J. (2013) Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding. Nat. Struct. Mol. Biol., 20, 237-243.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 237-243
-
-
Pechmann, S.1
Frydman, J.2
-
42
-
-
84979850805
-
Properties and determinants of codon translation speed distributions
-
Dana,A. and Tuller,T. (2014) Properties and determinants of codon translation speed distributions. BMC Genomics., 15, S13.
-
(2014)
BMC Genomics.
, vol.15
, pp. S13
-
-
Dana, A.1
Tuller, T.2
-
43
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia,N.T., Ghaemmaghami,S., Newman,J.R. and Weissman,J.S. (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science, 324, 218-223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
44
-
-
0027943337
-
Clustering of low usage codons and ribosome movement
-
Zhang,S., Goldman,E. and Zubay,G. (1994) Clustering of low usage codons and ribosome movement. J. Theor. Biol., 170, 339-354.
-
(1994)
J. Theor. Biol.
, vol.170
, pp. 339-354
-
-
Zhang, S.1
Goldman, E.2
Zubay, G.3
-
45
-
-
84896735970
-
Speed controls in translating secretory proteins in eukaryotes-an evolutionary perspective
-
Mahlab,S. and Linial,M. (2014) Speed controls in translating secretory proteins in eukaryotes-an evolutionary perspective. PLoS Comput. Biol.., 10, e1003294.
-
(2014)
PLoS Comput. Biol..
, vol.10
, pp. e1003294
-
-
Mahlab, S.1
Linial, M.2
-
46
-
-
63349088915
-
Biased codon usage in signal peptides: A role in protein export
-
Zalucki,Y.M., Beacham,I.R. and Jennings,M.P. (2009) Biased codon usage in signal peptides: a role in protein export. Trends Microbiol., 17, 146-150.
-
(2009)
Trends Microbiol.
, vol.17
, pp. 146-150
-
-
Zalucki, Y.M.1
Beacham, I.R.2
Jennings, M.P.3
-
47
-
-
62049083910
-
Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
-
Zhang,G., Hubalewska,M. and Ignatova,Z. (2009) Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat. Struct. Mol. Biol., 16, 274-280.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 274-280
-
-
Zhang, G.1
Hubalewska, M.2
Ignatova, Z.3
-
48
-
-
33846504706
-
A 'silent' polymorphism in the MDR1 gene changes substrate specificity
-
Kimchi-Sarfaty,C., Oh,J.M., Kim,I.-W., Sauna,Z.E., Calcagno,A.M., Ambudkar,S.V. and Gottesman,M.M. (2007) A 'silent' polymorphism in the MDR1 gene changes substrate specificity. Science, 315, 525-528.
-
(2007)
Science
, vol.315
, pp. 525-528
-
-
Kimchi-Sarfaty, C.1
Oh, J.M.2
Kim, I.-W.3
Sauna, Z.E.4
Calcagno, A.M.5
Ambudkar, S.V.6
Gottesman, M.M.7
-
49
-
-
44349120609
-
Analysis of the distribution of functionally relevant rare codons
-
Widmann,M., Clairo,M., Dippon,J. and Pleiss,J. (2008) Analysis of the distribution of functionally relevant rare codons. BMC Genomics., 9, 207.
-
(2008)
BMC Genomics.
, vol.9
, pp. 207
-
-
Widmann, M.1
Clairo, M.2
Dippon, J.3
Pleiss, J.4
-
50
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2
-
Ban,N., Nissen,P., Hansen,J., Moore,P.B. and Steitz,T.A. (2000) The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science., 289, 905-920.
-
(2000)
4 A Resolution. Science.
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
51
-
-
84856387699
-
Selection for translation efficiency on synonymous polymorphisms in recent human evolution
-
Waldman,Y.Y., Tuller,T., Keinan,A. and Ruppin,E. (2011) Selection for translation efficiency on synonymous polymorphisms in recent human evolution. Genome Biol. Evol., 3, 749-761.
-
(2011)
Genome Biol. Evol.
, vol.3
, pp. 749-761
-
-
Waldman, Y.Y.1
Tuller, T.2
Keinan, A.3
Ruppin, E.4
-
52
-
-
84894646451
-
Translation elongation can control translation initiation on eukaryotic mRNAs
-
Chu,D., Kazana,E., Bellanger,N., Singh,T., Tuite,M.F. and von der Haar,T. (2014) Translation elongation can control translation initiation on eukaryotic mRNAs. EMBO J., 33, 21-34.
-
(2014)
EMBO J.
, vol.33
, pp. 21-34
-
-
Chu, D.1
Kazana, E.2
Bellanger, N.3
Singh, T.4
Tuite, M.F.5
Von Der Haar, T.6
-
53
-
-
0028907431
-
Consecutive low-usage leucine codons block translation only when near the 5end of a message in Escherichia coli
-
Goldman,E., Rosenberg,A.H., Zubay,G. and Studier,F.W. (1995) Consecutive low-usage leucine codons block translation only when near the 5end of a message in Escherichia coli. J. Mol. Biol., 245, 467-473.
-
(1995)
J. Mol. Biol.
, vol.245
, pp. 467-473
-
-
Goldman, E.1
Rosenberg, A.H.2
Zubay, G.3
Studier, F.W.4
-
54
-
-
84893326533
-
Challenges and obstacles related to solving the codon bias riddles
-
Tuller,T. (2014) Challenges and obstacles related to solving the codon bias riddles. Biochem. Soc. Trans., 42, 155-159.
-
(2014)
Biochem. Soc. Trans.
, vol.42
, pp. 155-159
-
-
Tuller, T.1
-
55
-
-
77955102352
-
Quantifying e coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Taniguchi,Y., Choi,P.J., Li,G.W., Chen,H., Babu,M., Hearn,J., Emili,A. and Xie,X.S. (2010) Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science, 329, 533-538.
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
Hearn, J.6
Emili, A.7
Xie, X.S.8
-
56
-
-
4644280499
-
Solving the riddle of codon usage preferences: A test for translational selection
-
dos Reis,M., Savva,R. and Wernisch,L. (2004) Solving the riddle of codon usage preferences: a test for translational selection. Nucleic Acids Res., 32, 5036-5044.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5036-5044
-
-
Dos Reis, M.1
Savva, R.2
Wernisch, L.3
-
57
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews,D.H., Sabina,J., Zuker,M. and Turner,D.H. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
58
-
-
71549158509
-
Measuring and detecting molecular adaptation in codon usage against nonsense errors during protein translation
-
Gilchrist,M.A., Shah,P. and Zaretzki,R. (2009) Measuring and detecting molecular adaptation in codon usage against nonsense errors during protein translation. Genetics., 183, 1493-1505.
-
(2009)
Genetics.
, vol.183
, pp. 1493-1505
-
-
Gilchrist, M.A.1
Shah, P.2
Zaretzki, R.3
-
59
-
-
35848952077
-
Combining models of protein translation and population genetics to predict protein production rates from codon usage patterns
-
Gilchrist,M.A. (2007) Combining models of protein translation and population genetics to predict protein production rates from codon usage patterns. Mol. Biol. Evol., 24, 2362-2372.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 2362-2372
-
-
Gilchrist, M.A.1
-
60
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2 4 A resolution
-
Ban,N., Nissen,P., Hansen,J., Moore,P.B. and Steitz,T.A. (2000) The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science, 289, 905-920.
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
61
-
-
84894318608
-
Ribosome profiling: New views of translation, from single codons to genome scale
-
Ingolia,N.T. (2014) Ribosome profiling: new views of translation, from single codons to genome scale. Nat. Rev. Genet., 15, 205-213.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 205-213
-
-
Ingolia, N.T.1
-
62
-
-
81055155799
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
-
Ingolia,N.T., Lareau,L.F. and Weissman,J.S. (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell, 147, 789-802.
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
63
-
-
84870717729
-
Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells
-
Dana,A. and Tuller,T. (2012) Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells. PLoS Comput. Biol., 8, e1002755.
-
(2012)
PLoS Comput. Biol.
, vol.8
, pp. e1002755
-
-
Dana, A.1
Tuller, T.2
-
64
-
-
84906235471
-
The effect of tRNA levels on decoding times of mRNA codons
-
Dana,A. and Tuller,T. (2014) The effect of tRNA levels on decoding times of mRNA codons. Nucleic Acids Res., 42, 9171-9181.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 9171-9181
-
-
Dana, A.1
Tuller, T.2
-
65
-
-
81755184408
-
Wobble base-pairing slows in vivo translation elongation in metazoans
-
Stadler,M. and Fire,A. (2011) Wobble base-pairing slows in vivo translation elongation in metazoans. RNA, 17, 2063-2073.
-
(2011)
RNA
, vol.17
, pp. 2063-2073
-
-
Stadler, M.1
Fire, A.2
-
66
-
-
84964315924
-
Translation inhibitors cause abnormalities in ribosome profiling experiments
-
Gerashchenko,M.V. and Gladyshev,V.N. (2014) Translation inhibitors cause abnormalities in ribosome profiling experiments. Nucleic Acids Res., 42, e134.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. e134
-
-
Gerashchenko, M.V.1
Gladyshev, V.N.2
-
67
-
-
0025804898
-
The sequence flanking translational initiation site in protozoa
-
Yamauchi,K. (1991) The sequence flanking translational initiation site in protozoa. Nucleic Acids Res., 19, 2715-2720.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 2715-2720
-
-
Yamauchi, K.1
-
68
-
-
0002925272
-
Selection of AUG initiation codons differs in plants and animals
-
Lutcke,H.A., Chow,K.C., Mickel,F.S., Moss,K.A., Kern,H.F. and Scheele,G.A. (1987) Selection of AUG initiation codons differs in plants and animals. EMBO J., 6, 43-48.
-
(1987)
EMBO J.
, vol.6
, pp. 43-48
-
-
Lutcke, H.A.1
Chow, K.C.2
Mickel, F.S.3
Moss, K.A.4
Kern, H.F.5
Scheele, G.A.6
-
69
-
-
39449116322
-
Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes
-
Nakagawa,S., Niimura,Y., Gojobori,T., Tanaka,H. and Miura,K. (2008) Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. Nucleic Acids Res., 36, 861-871.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 861-871
-
-
Nakagawa, S.1
Niimura, Y.2
Gojobori, T.3
Tanaka, H.4
Miura, K.5
-
70
-
-
84886295833
-
Mapping the translation initiation landscape of an S cerevisiae gene using fluorescent proteins
-
Ben-Yehezkel,T., Zur,H., Marx,T., Shpiro,E. and Tuller,T. (2013) Mapping the translation initiation landscape of an S. cerevisiae gene using fluorescent proteins. Genomics, 102, 419-429.
-
(2013)
Genomics
, vol.102
, pp. 419-429
-
-
Ben-Yehezkel, T.1
Zur, H.2
Marx, T.3
Shpiro, E.4
Tuller, T.5
-
71
-
-
84901017612
-
Alternative transcription initiation and the AUG context configuration control dual-organellar targeting and functional competence of arabidopsis Lon1 protease
-
Daras,G., Rigas,S., Tsitsekian,D., Zur,H., Tuller,T. and Hatzopoulos,P. (2014) Alternative transcription initiation and the AUG context configuration control dual-organellar targeting and functional competence of arabidopsis Lon1 protease. Mol. Plant., 7, 989-1005.
-
(2014)
Mol. Plant.
, vol.7
, pp. 989-1005
-
-
Daras, G.1
Rigas, S.2
Tsitsekian, D.3
Zur, H.4
Tuller, T.5
Hatzopoulos, P.6
-
72
-
-
25844434373
-
Plant organellar protein targeting: A traffic plan still under construction
-
Mackenzie,S.A. (2005) Plant organellar protein targeting: a traffic plan still under construction. Trends Cell Biol., 15, 548-554.
-
(2005)
Trends Cell Biol.
, vol.15
, pp. 548-554
-
-
Mackenzie, S.A.1
-
73
-
-
0026052097
-
mRNA leader length and initiation codon context determine alternative AUG selection for the yeast gene MOD5
-
U.S.A.
-
Slusher,L.B., Gillman,E.C., Martin,N.C. and Hopper,A.K. (1991) mRNA leader length and initiation codon context determine alternative AUG selection for the yeast gene MOD5. Proc. Natl. Acad. Sci. U.S.A., 88, 9789-9793.
-
(1991)
Proc. Natl. Acad. Sci.
, vol.88
, pp. 9789-9793
-
-
Slusher, L.B.1
Gillman, E.C.2
Martin, N.C.3
Hopper, A.K.4
-
74
-
-
0028955936
-
Alternative translation of human fibroblast growth factor 2 mRNA occurs by internal entry of ribosomes
-
Vagner,S., Gensac,M.C., Maret,A., Bayard,F., Amalric,F., Prats,H. and Prats,A.C. (1995) Alternative translation of human fibroblast growth factor 2 mRNA occurs by internal entry of ribosomes. Mol. Cell. Biol., 15, 35-44.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 35-44
-
-
Vagner, S.1
Gensac, M.C.2
Maret, A.3
Bayard, F.4
Amalric, F.5
Prats, H.6
Prats, A.C.7
-
75
-
-
0029015912
-
How can the products of a single gene be localized to more than one intracellular compartment
-
Danpure,C.J. (1995) How can the products of a single gene be localized to more than one intracellular compartment? Trends Cell Biol., 5, 230-238.
-
(1995)
Trends Cell Biol
, vol.5
, pp. 230-238
-
-
Danpure, C.J.1
-
76
-
-
77952893296
-
Dual sites of protein initiation control the localization and myristoylation of methionine sulfoxide reductase A
-
Kim,G., Cole,N.B., Lim,J.C., Zhao,H. and Levine,R.L. (2010) Dual sites of protein initiation control the localization and myristoylation of methionine sulfoxide reductase A. J. Biol. Chem., 285, 18085-18094.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 18085-18094
-
-
Kim, G.1
Cole, N.B.2
Lim, J.C.3
Zhao, H.4
Levine, R.L.5
-
77
-
-
0016753216
-
Transfer of proteins across membranes I. Presence of proteolytically processed and unprocessed nascent immunoglobulin light chains on membrane-bound ribosomes of murine myeloma
-
Blobel,G. and Dobberstein,B. (1975) Transfer of proteins across membranes. I. Presence of proteolytically processed and unprocessed nascent immunoglobulin light chains on membrane-bound ribosomes of murine myeloma. J. Cell Biol., 67, 835-851.
-
(1975)
J. Cell Biol.
, vol.67
, pp. 835-851
-
-
Blobel, G.1
Dobberstein, B.2
-
78
-
-
54249096045
-
Electrostatics in the ribosomal tunnel modulate chain elongation rates
-
Lu,J. and Deutsch,C. (2008) Electrostatics in the ribosomal tunnel modulate chain elongation rates. J. Mol. Biol., 384, 73-86.
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 73-86
-
-
Lu, J.1
Deutsch, C.2
-
79
-
-
79251557798
-
Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center
-
Ramu,H., Vazquez-Laslop,N., Klepacki,D., Dai,Q., Piccirilli,J., Micura,R. and Mankin,A.S. (2011) Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center. Mol. Cell, 41, 321-330.
-
(2011)
Mol. Cell
, vol.41
, pp. 321-330
-
-
Ramu, H.1
Vazquez-Laslop, N.2
Klepacki, D.3
Dai, Q.4
Piccirilli, J.5
Micura, R.6
Mankin, A.S.7
-
80
-
-
61649098586
-
Statics of the ribosomal exit tunnel: Implications for cotranslational peptide folding, elongation regulation, and antibiotics binding
-
Fulle,S. and Gohlke,H. (2009) Statics of the ribosomal exit tunnel: implications for cotranslational peptide folding, elongation regulation, and antibiotics binding. J. Mol. Biol., 387, 502-517.
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 502-517
-
-
Fulle, S.1
Gohlke, H.2
-
81
-
-
84874611913
-
Nascent peptides that block protein synthesis in bacteria
-
U.S.A..
-
Woolstenhulme,C.J., Parajuli,S., Healey,D.W., Valverde,D.P., Petersen,E.N., Starosta,A.L., Guydosh,N.R., Johnson,W.E., Wilson,D.N. and Buskirk,A.R. (2013) Nascent peptides that block protein synthesis in bacteria. Proc. Natl. Acad. Sci. U.S.A.., 110, E878-887.
-
(2013)
Proc. Natl. Acad. Sci.
, vol.110
, pp. E878-887
-
-
Woolstenhulme, C.J.1
Parajuli, S.2
Healey, D.W.3
Valverde, D.P.4
Petersen, E.N.5
Starosta, A.L.6
Guydosh, N.R.7
Johnson, W.E.8
Wilson, D.N.9
Buskirk, A.R.10
-
82
-
-
84875465945
-
Positively charged residues are the major determinants of ribosomal velocity
-
Charneski,C.A. and Hurst,L.D. (2013) Positively charged residues are the major determinants of ribosomal velocity. PLoS Biol., 11, e1001508.
-
(2013)
PLoS Biol.
, vol.11
, pp. e1001508
-
-
Charneski, C.A.1
Hurst, L.D.2
-
83
-
-
84891816803
-
Positive charge loading at protein termini is due to membrane protein topology, not a translational ramp
-
Charneski,C.A. and Hurst,L.D. (2014) Positive charge loading at protein termini is due to membrane protein topology, not a translational ramp. Mol. Biol. Evol., 31, 70-84.
-
(2014)
Mol. Biol. Evol.
, vol.31
, pp. 70-84
-
-
Charneski, C.A.1
Hurst, L.D.2
-
84
-
-
84873442839
-
Widespread regulation of translation by elongation pausing in heat shock
-
Shalgi,R., Hurt,J.A., Krykbaeva,I., Taipale,M., Lindquist,S. and Burge,C.B. (2013) Widespread regulation of translation by elongation pausing in heat shock. Mol. Cell, 49, 439-452.
-
(2013)
Mol. Cell
, vol.49
, pp. 439-452
-
-
Shalgi, R.1
Hurt, J.A.2
Krykbaeva, I.3
Taipale, M.4
Lindquist, S.5
Burge, C.B.6
-
85
-
-
77956306662
-
Genome-wide measurement of RNA secondary structure in yeast
-
Kertesz,M., Wan,Y., Mazor,E., Rinn,J.L., Nutter,R.C., Chang,H.Y. and Segal,E. (2010) Genome-wide measurement of RNA secondary structure in yeast. Nature, 467, 103-107.
-
(2010)
Nature
, vol.467
, pp. 103-107
-
-
Kertesz, M.1
Wan, Y.2
Mazor, E.3
Rinn, J.L.4
Nutter, R.C.5
Chang, H.Y.6
Segal, E.7
-
86
-
-
84905375893
-
Codon-by-codon modulation of translational speed and accuracy via mRNA folding
-
Yang,J.R., Chen,X. and Zhang,J. (2014) Codon-by-codon modulation of translational speed and accuracy via mRNA folding. PLoS Biol., 12, e1001910.
-
(2014)
PLoS Biol.
, vol.12
, pp. e1001910
-
-
Yang, J.R.1
Chen, X.2
Zhang, J.3
-
87
-
-
84964314754
-
Measurement of average decoding rates of the 61 sense codons in vivo
-
Gardin,J., Yeasmin,R., Yurovsky,A., Cai,Y., Skiena,S. and Futcher,B. (2014) Measurement of average decoding rates of the 61 sense codons in vivo. Elife., 3, doi:10.7554/eLife.03735.
-
(2014)
Elife.
, vol.3
-
-
Gardin, J.1
Yeasmin, R.2
Yurovsky, A.3
Cai, Y.4
Skiena, S.5
Futcher, B.6
-
88
-
-
38349117689
-
The bacterial enzyme RppH triggers messenger RNA degradation by 5pyrophosphate removal
-
Deana,A., Celesnik,H. and Belasco,J.G. (2008) The bacterial enzyme RppH triggers messenger RNA degradation by 5pyrophosphate removal. Nature., 451, 355-358.
-
(2008)
Nature.
, vol.451
, pp. 355-358
-
-
Deana, A.1
Celesnik, H.2
Belasco, J.G.3
-
89
-
-
34250729202
-
Maturation and degradation of RNA in bacteria
-
Condon,C. (2007) Maturation and degradation of RNA in bacteria. Curr. Opin. Microbiol., 10, 271-278.
-
(2007)
Curr. Opin. Microbiol.
, vol.10
, pp. 271-278
-
-
Condon, C.1
-
90
-
-
82855177827
-
Sequence features of e coli mRNAs affect their degradation
-
Lenz,G., Doron-Faigenboim,A., Ron,E.Z., Tuller,T. and Gophna,U. (2012) Sequence features of E. coli mRNAs affect their degradation. PLoS One, 6, e28544.
-
(2012)
PLoS One
, vol.6
, pp. e28544
-
-
Lenz, G.1
Doron-Faigenboim, A.2
Ron, E.Z.3
Tuller, T.4
Gophna, U.5
-
91
-
-
25844513164
-
The relationship among gene expression, folding free energy and codon usage bias in Escherichia coli
-
Jia,M. and Li,Y. (2005) The relationship among gene expression, folding free energy and codon usage bias in Escherichia coli. FEBS Lett., 579, 5333-5337.
-
(2005)
FEBS Lett.
, vol.579
, pp. 5333-5337
-
-
Jia, M.1
Li, Y.2
-
92
-
-
84857770146
-
Strong association between mRNA folding strength and protein abundance in S cerevisiae
-
Zur,H. and Tuller,T. (2012) Strong association between mRNA folding strength and protein abundance in S. cerevisiae. EMBO Rep.,13, 272-277.
-
(2012)
EMBO Rep.
, vol.13
, pp. 272-277
-
-
Zur, H.1
Tuller, T.2
-
93
-
-
47549097539
-
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
-
Drummond,D.A. and Wilke,C.O. (2008) Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell, 134, 341-352.
-
(2008)
Cell
, vol.134
, pp. 341-352
-
-
Drummond, D.A.1
Wilke, C.O.2
-
94
-
-
0027104840
-
Translational accuracy and the fitness of bacteria
-
Kurland,C.G. (1992) Translational accuracy and the fitness of bacteria. Annu. Rev. Genet., 26, 29-50.
-
(1992)
Annu. Rev. Genet.
, vol.26
, pp. 29-50
-
-
Kurland, C.G.1
-
95
-
-
70349333227
-
The evolutionary consequences of erroneous protein synthesis
-
Drummond,D.A. and Wilke,C.O. (2009) The evolutionary consequences of erroneous protein synthesis. Nat. Rev. Genet., 10, 715-724.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 715-724
-
-
Drummond, D.A.1
Wilke, C.O.2
-
96
-
-
84859185749
-
Engineering genes for predictable protein expression
-
Gustafsson,C., Minshull,J., Govindarajan,S., Ness,J., Villalobos,A. and Welch,M. (2012) Engineering genes for predictable protein expression. Protein Expr. Purif., 83, 37-46.
-
(2012)
Protein Expr. Purif.
, vol.83
, pp. 37-46
-
-
Gustafsson, C.1
Minshull, J.2
Govindarajan, S.3
Ness, J.4
Villalobos, A.5
Welch, M.6
-
97
-
-
0345306751
-
The origins of genome complexity
-
Lynch,M. and Conery,J.S. (2003) The origins of genome complexity. Science, 302, 1401-1404.
-
(2003)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
98
-
-
58449121403
-
Estimating translational selection in eukaryotic genomes
-
dos Reis,M. and Wernisch,L. (2009) Estimating translational selection in eukaryotic genomes. Mol. Biol. Evol., 26, 451-461.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 451-461
-
-
Dos Reis, M.1
Wernisch, L.2
-
99
-
-
0344237338
-
Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome
-
dos Reis,M., Wernisch,L. and Savva,R. (2003) Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome. Nucleic Acids Res., 31, 6976-6985.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6976-6985
-
-
Dos Reis, M.1
Wernisch, L.2
Savva, R.3
-
100
-
-
0017771466
-
Evolution and tinkering
-
Jacob,F. (1977) Evolution and tinkering. Science., 196, 1161-1166.
-
(1977)
Science.
, vol.196
, pp. 1161-1166
-
-
Jacob, F.1
-
103
-
-
84900308934
-
Transcript features enable accurate prediction and understanding of gene expression in S. Cerevisiae
-
Zur,H. and Tuller,T. (2013) Transcript features enable accurate prediction and understanding of gene expression in S. cerevisiae. BMC Bioinfomatics., 14, S1.
-
(2013)
BMC Bioinfomatics.
, vol.14
, pp. S1
-
-
Zur, H.1
Tuller, T.2
-
104
-
-
78349248644
-
On relevance of codon usage to expression of synthetic and natural genes in Escherichia coli
-
Supek,F. and Smuc,T. (2010) On relevance of codon usage to expression of synthetic and natural genes in Escherichia coli. Genetics, 185, 1129-1134.
-
(2010)
Genetics
, vol.185
, pp. 1129-1134
-
-
Supek, F.1
Smuc, T.2
-
105
-
-
8744310123
-
Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization
-
Rocha,E.P. (2004) Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization. Genome Res., 14, 2279-2286.
-
(2004)
Genome Res.
, vol.14
, pp. 2279-2286
-
-
Rocha, E.P.1
-
106
-
-
14544277543
-
Variation in the strength of selected codon usage bias among bacteria
-
Sharp,P.M., Bailes,E., Grocock,R.J., Peden,J.F. and Sockett,R.E. (2005) Variation in the strength of selected codon usage bias among bacteria. Nucleic Acids Res., 33, 1141-1153.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1141-1153
-
-
Sharp, P.M.1
Bailes, E.2
Grocock, R.J.3
Peden, J.F.4
Sockett, R.E.5
-
107
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
Bernardi,G. (2000) Isochores and the evolutionary genomics of vertebrates. Gene, 241, 3-17.
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
Bernardi, G.1
-
108
-
-
0034821884
-
Codon usage and tRNA genes in eukaryotes: Correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis
-
Kanaya,S., Yamada,Y., Kinouchi,M., Kudo,Y. and Ikemura,T. (2001) Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis. J. Mol. Evol., 53, 290-298.
-
(2001)
J. Mol. Evol.
, vol.53
, pp. 290-298
-
-
Kanaya, S.1
Yamada, Y.2
Kinouchi, M.3
Kudo, Y.4
Ikemura, T.5
-
109
-
-
77953283586
-
Translation efficiency in humans: Tissue specificity, global optimization and differences between developmental stages
-
Waldman,Y.Y., Tuller,T., Shlomi,T., Sharan,R. and Ruppin,E. (2010) Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages. Nucleic Acids Res., 38, 2964-2974.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2964-2974
-
-
Waldman, Y.Y.1
Tuller, T.2
Shlomi, T.3
Sharan, R.4
Ruppin, E.5
-
110
-
-
77957294373
-
Insights into dengue virus genome replication
-
Alcaraz-Estrada,S.L., Yocupicio-Monroy,M. and del Angel,R.M. (2010) Insights into dengue virus genome replication. Future Virol., 5, 575-592.
-
(2010)
Future Virol.
, vol.5
, pp. 575-592
-
-
Alcaraz-Estrada, S.L.1
Yocupicio-Monroy, M.2
Del Angel, R.M.3
-
111
-
-
0035945235
-
Conserved RNA secondary structures in Picornaviridae genomes
-
Witwer,C., Rauscher,S., Hofacker,I.L. and Stadler,P.F. (2001) Conserved RNA secondary structures in Picornaviridae genomes. Nucleic Acids Res., 29, 5079-5089.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 5079-5089
-
-
Witwer, C.1
Rauscher, S.2
Hofacker, I.L.3
Stadler, P.F.4
-
112
-
-
79952350113
-
Reduced stability of mRNA secondary structure near the translation-initiation site in dsDNA viruses
-
Zhou,T. and Wilke,C.O. (2011) Reduced stability of mRNA secondary structure near the translation-initiation site in dsDNA viruses. BMC Evol. Biol., 11, 59.
-
(2011)
BMC Evol. Biol.
, vol.11
, pp. 59
-
-
Zhou, T.1
Wilke, C.O.2
|