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Volumn 20, Issue 11, 2010, Pages 1582-1589

Overlapping codes within protein-coding sequences

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; BACTERIAL PROTEIN; MICRORNA; PROTEIN;

EID: 77958082013     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.105072.110     Document Type: Article
Times cited : (66)

References (32)
  • 1
    • 33645763269 scopus 로고    scopus 로고
    • DNA sequences shaped by selection for stability
    • doi: 10.1371/journal.pgen.0020022
    • Ackermann M, Chao L. 2006. DNA sequences shaped by selection for stability. PLoS Genet 2: e22. doi: 10.1371/journal.pgen.0020022.
    • (2006) PLoS Genet , vol.2
    • Ackermann, M.1    Chao, L.2
  • 2
    • 0025297285 scopus 로고
    • Codon preferences in free-living microorganisms
    • Andersson SG, Kurland CG. 1990. Codon preferences in free-living microorganisms. Microbiol Rev 54: 198-210.
    • (1990) Microbiol Rev , vol.54 , pp. 198-210
    • Andersson, S.G.1    Kurland, C.G.2
  • 3
    • 1942435249 scopus 로고    scopus 로고
    • Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs
    • Bartel DP, Chen CZ. 2004. Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs. Nat Rev Genet 5: 396-400.
    • (2004) Nat Rev Genet , vol.5 , pp. 396-400
    • Bartel, D.P.1    Chen, C.Z.2
  • 4
    • 0038620436 scopus 로고    scopus 로고
    • Codon pairs in the genome of Escherichia coli
    • DOI 10.1093/bioinformatics/btg082
    • Boycheva S, Chkodrov G, Ivanov I. 2003. Codon pairs in the genome of Escherichia coli. Bioinformatics 19: 987-998. (Pubitemid 36675820)
    • (2003) Bioinformatics , vol.19 , Issue.8 , pp. 987-998
    • Boycheva, S.1    Chkodrov, G.2    Ivanov, I.3
  • 6
    • 0026502711 scopus 로고
    • Over- and under-representation of short oligonucleotides in DNA sequences
    • BurgeC,CampbellAM,Karlin S. 1992. Over- and under-representation of short oligonucleotides in DNA sequences. Proc Natl Acad Sci 89: 1358-1362.
    • (1992) Proc Natl Acad Sci , vol.89 , pp. 1358-1362
    • Burge, C.1    Campbell, A.M.2    Karlin, S.3
  • 7
    • 0014378880 scopus 로고
    • The origin of the genetic code
    • Crick FH. 1968. The origin of the genetic code. J Mol Biol 38: 367-379.
    • (1968) J Mol Biol , vol.38 , pp. 367-379
    • Crick, F.H.1
  • 8
    • 42449086421 scopus 로고    scopus 로고
    • MiR-148 targets human DNMT3b protein coding region
    • DOI 10.1261/rna.972008
    • Duursma AM, Kedde M, Schrier M, le Sage C, Agami R. 2008. miR-148 targets human DNMT3b protein coding region. RNA 14: 872-877. (Pubitemid 351574909)
    • (2008) RNA , vol.14 , Issue.5 , pp. 872-877
    • Duursma, A.M.1    Kedde, M.2    Schrier, M.3    Le Sage, C.4    Agami, R.5
  • 9
    • 3042782819 scopus 로고    scopus 로고
    • Microsatellites: Simple sequences with complex evolution
    • DOI 10.1038/nrg1348
    • Ellegren H. 2004. Microsatellites: Simple sequences with complex evolution. Nat Rev Genet 5: 435-445. (Pubitemid 38915410)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.6 , pp. 435-445
    • Ellegren, H.1
  • 10
    • 0027059264 scopus 로고
    • Assessment of protein coding measures
    • Fickett JW, Tung CS. 1992. Assessment of protein coding measures. Nucleic Acids Res 20: 6441-6450.
    • (1992) Nucleic Acids Res , vol.20 , pp. 6441-6450
    • Fickett, J.W.1    Tung, C.S.2
  • 11
    • 54449097149 scopus 로고    scopus 로고
    • A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence
    • Forman JJ, Legesse-Miller A, Coller HA. 2008. A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence. Proc Natl Acad Sci 105: 14879-14884.
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 14879-14884
    • Forman, J.J.1    Legesse-Miller, A.2    Coller, H.A.3
  • 12
    • 0030740993 scopus 로고    scopus 로고
    • Avoidance of palindromic words in bacterial and archaeal genomes: A close connection with restriction enzymes
    • Gelfand MS, Koonin EV. 1997. Avoidance of palindromic words in bacterial and archaeal genomes: A close connection with restriction enzymes. Nucleic Acids Res 25: 2430-2439.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2430-2439
    • Gelfand, M.S.1    Koonin, E.V.2
  • 13
    • 0037380022 scopus 로고    scopus 로고
    • Transcription-associated mutational asymmetry in mammalian evolution
    • Green P, Ewing B, Miller W, Thomas PJ, Green ED. 2003. Transcription-associated mutational asymmetry in mammalian evolution. Nat Genet 33: 514-517.
    • (2003) Nat Genet , vol.33 , pp. 514-517
    • Green, P.1    Ewing, B.2    Miller, W.3    Thomas, P.J.4    Green, E.D.5
  • 15
    • 3042782585 scopus 로고    scopus 로고
    • Codon bias and heterologous protein expression
    • DOI 10.1016/j.tibtech.2004.04.006, PII S0167779904001118
    • Gustafsson C, Govindarajan S, Minshull J. 2004. Codon bias and heterologous protein expression. Trends Biotechnol 22: 346-353. (Pubitemid 38887543)
    • (2004) Trends in Biotechnology , vol.22 , Issue.7 , pp. 346-353
    • Gustafsson, C.1    Govindarajan, S.2    Minshull, J.3
  • 16
    • 0038586484 scopus 로고    scopus 로고
    • The effects of selection against spurious transcription factor binding sites
    • DOI 10.1093/molbev/msg096
    • Hahn MW, Stajich JE, Wray GA. 2003. The effects of selection against spurious transcription factor binding sites. Mol Biol Evol 20: 901-906. (Pubitemid 36578716)
    • (2003) Molecular Biology and Evolution , vol.20 , Issue.6 , pp. 901-906
    • Hahn, M.W.1    Stajich, J.E.2    Wray, G.A.3
  • 17
    • 45449099933 scopus 로고    scopus 로고
    • Advances in bacterial promoter recognition and its control by factors that do not bind DNA
    • DOI 10.1038/nrmicro1912, PII NRMICRO1912
    • Haugen SP, Ross W, Gourse RL. 2008. Advances in bacterial promoter recognition and its control by factors that do not bind DNA. Nat Rev Microbiol 6: 507-519. (Pubitemid 351850975)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.7 , pp. 507-519
    • Haugen, S.P.1    Ross, W.2    Gourse, R.L.3
  • 18
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • Hofacker IL. 2003. Vienna RNA secondary structure server. Nucleic Acids Res 31: 3429-3431.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1
  • 19
    • 33847032203 scopus 로고    scopus 로고
    • The genetic code is nearly optimal for allowing additional information within protein-coding sequences
    • DOI 10.1101/gr.5987307
    • Itzkovitz S, Alon U. 2007. The genetic code is nearly optimal for allowing additional information within protein-coding sequences. Genome Res 17: 405-412. (Pubitemid 46556444)
    • (2007) Genome Research , vol.17 , Issue.4 , pp. 405-412
    • Itzkovitz, S.1    Alon, U.2
  • 20
    • 0141519339 scopus 로고    scopus 로고
    • Widespread selection for local RNA secondary structure in coding regions of bacterial genes
    • DOI 10.1101/gr.1257503
    • Katz L, Burge CB. 2003.Widespread selection for local RNA secondary structure in coding regions of bacterial genes. Genome Res 13: 2042-2051. (Pubitemid 37161761)
    • (2003) Genome Research , vol.13 , Issue.9 , pp. 2042-2051
    • Katz, L.1    Burge, C.B.2
  • 21
    • 0025792297 scopus 로고
    • Structural features in eukaryotic mRNAs that modulate the initiation of translation
    • Kozak M. 1991. Structural features in eukaryotic messenger-RNAs that modulate the initiation of translation. J Biol Chem 266: 19867-19870. (Pubitemid 21908396)
    • (1991) Journal of Biological Chemistry , vol.266 , Issue.30 , pp. 19867-19870
    • Kozak, M.1
  • 22
    • 64849114915 scopus 로고    scopus 로고
    • Coding-sequence determinants of gene expression in Escherichia coli
    • Kudla G, Murray AW, Tollervey D, Plotkin JB. 2009. Coding-sequence determinants of gene expression in Escherichia coli. Science 324: 255-258.
    • (2009) Science , vol.324 , pp. 255-258
    • Kudla, G.1    Murray, A.W.2    Tollervey, D.3    Plotkin, J.B.4
  • 23
    • 30744475434 scopus 로고    scopus 로고
    • The origins of eukaryotic gene structure
    • Lynch M. 2006. The origins of eukaryotic gene structure. Mol Biol Evol 23: 450-468.
    • (2006) Mol Biol Evol , vol.23 , pp. 450-468
    • Lynch, M.1
  • 24
    • 39449087192 scopus 로고    scopus 로고
    • Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure
    • doi: 10.1371/journal.pone.0000847
    • Moura G, Pinheiro M, Arrais J, Gomes AC, Carreto L, Freitas A, Oliveira JL, Santos MA. 2007. Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure. PLoS ONE 2: e847. doi: 10.1371/journal.pone.0000847.
    • (2007) PLoS ONE , vol.2
    • Moura, G.1    Pinheiro, M.2    Arrais, J.3    Gomes, A.C.4    Carreto, L.5    Freitas, A.6    Oliveira, J.L.7    Santos, M.A.8
  • 26
    • 65949121645 scopus 로고    scopus 로고
    • New tricks for animal microRNAS: Targeting of amino acid coding regions at conserved and nonconserved sites
    • Rigoutsos I. 2009. New tricks for animal microRNAS: Targeting of amino acid coding regions at conserved and nonconserved sites. Cancer Res 69: 3245-3248.
    • (2009) Cancer Res , vol.69 , pp. 3245-3248
    • Rigoutsos, I.1
  • 28
    • 0023042012 scopus 로고
    • Information content of binding sites on nucleotide sequences
    • SchneiderTD, StormoGD, Gold L, Ehrenfeucht A. 1986. Information content of binding sites on nucleotide sequences. J Mol Biol 188: 415-431.
    • (1986) J Mol Biol , vol.188 , pp. 415-431
    • Schneider, T.D.1    Stormo, G.D.2    Gold, L.3    Ehrenfeucht, A.4
  • 30
    • 0016610995 scopus 로고
    • Determinant of cistron specificity in bacterial ribosomes
    • Shine J, Dalgarno L. 1975. Determinant of cistron specificity in bacterial ribosomes. Nature 254: 34-38.
    • (1975) Nature , vol.254 , pp. 34-38
    • Shine, J.1    Dalgarno, L.2
  • 31
    • 0034069452 scopus 로고    scopus 로고
    • Gene-finding approaches for eukaryotes
    • Stormo GD. 2000. Gene-finding approaches for eukaryotes. Genome Res 10: 394-397.
    • (2000) Genome Res , vol.10 , pp. 394-397
    • Stormo, G.D.1
  • 32
    • 22544464152 scopus 로고    scopus 로고
    • The biology of restriction and anti-restriction
    • Tock MR, Dryden DT. 2005. The biology of restriction and anti-restriction. Curr Opin Microbiol 8: 466-472.
    • (2005) Curr Opin Microbiol , vol.8 , pp. 466-472
    • Tock, M.R.1    Dryden, D.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.