-
1
-
-
0032617132
-
Degradation of mRNA in Escherichia coli: an old problem with some new twists
-
Coburn GA, Mackie GA, (1999) Degradation of mRNA in Escherichia coli: an old problem with some new twists. Prog Nucleic Acid Res Mol Biol 62: 55-108.
-
(1999)
Prog Nucleic Acid Res Mol Biol
, vol.62
, pp. 55-108
-
-
Coburn, G.A.1
Mackie, G.A.2
-
2
-
-
71249090871
-
Adaptation of Escherichi coli to elevated temperatures involves a change in stability of heat shock gene transcripts
-
Shenhar Y, Rasouly A, Biran D, Ron EZ, (2009) Adaptation of Escherichi coli to elevated temperatures involves a change in stability of heat shock gene transcripts. Environ Microbiol 11: 2989-2997.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2989-2997
-
-
Shenhar, Y.1
Rasouly, A.2
Biran, D.3
Ron, E.Z.4
-
4
-
-
0037315564
-
Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation
-
Selinger DW, Saxena RM, Cheung KJ, Church GM, Rosenow C, (2003) Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation. Genome Res 13: 216-223.
-
(2003)
Genome Res
, vol.13
, pp. 216-223
-
-
Selinger, D.W.1
Saxena, R.M.2
Cheung, K.J.3
Church, G.M.4
Rosenow, C.5
-
5
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN, (2002) Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99: 9697-9702.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
6
-
-
34250729202
-
Maturation and degradation of RNA in bacteria
-
Condon C, (2007) Maturation and degradation of RNA in bacteria. Curr Opin Microbiol 10: 271-278.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 271-278
-
-
Condon, C.1
-
7
-
-
33847129281
-
Relationship between mRNA stability and length: an old question with a new twist
-
Feng L, Niu DK, (2007) Relationship between mRNA stability and length: an old question with a new twist. Biochem Genet 45: 131-137.
-
(2007)
Biochem Genet
, vol.45
, pp. 131-137
-
-
Feng, L.1
Niu, D.K.2
-
8
-
-
34247109118
-
Hfq structure, function and ligand binding
-
Brennan RG, Link TM, (2007) Hfq structure, function and ligand binding. Curr Opin Microbiol 10: 125-133.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 125-133
-
-
Brennan, R.G.1
Link, T.M.2
-
9
-
-
33947361601
-
Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli
-
Guisbert E, Rhodius VA, Ahuja N, Witkin E, Gross CA, (2007) Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli. J Bacteriol 189: 1963-1973.
-
(2007)
J Bacteriol
, vol.189
, pp. 1963-1973
-
-
Guisbert, E.1
Rhodius, V.A.2
Ahuja, N.3
Witkin, E.4
Gross, C.A.5
-
10
-
-
34047263288
-
Cold shock proteins aid coupling of transcription and translation in bacteria
-
El-Sharoud WM, Graumann PL, (2007) Cold shock proteins aid coupling of transcription and translation in bacteria. Sci Prog 90: 15-27.
-
(2007)
Sci Prog
, vol.90
, pp. 15-27
-
-
El-Sharoud, W.M.1
Graumann, P.L.2
-
11
-
-
0032858516
-
Sequence-selective interactions with RNA by CspB, CspC and CspE, members of the CspA family of Escherichia coli
-
Phadtare S, Inouye M, (1999) Sequence-selective interactions with RNA by CspB, CspC and CspE, members of the CspA family of Escherichia coli. Mol Microbiol 33: 1004-1014.
-
(1999)
Mol Microbiol
, vol.33
, pp. 1004-1014
-
-
Phadtare, S.1
Inouye, M.2
-
12
-
-
0035142067
-
Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coli
-
Phadtare S, Inouye M, (2001) Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coli. J Bacteriol 183: 1205-1214.
-
(2001)
J Bacteriol
, vol.183
, pp. 1205-1214
-
-
Phadtare, S.1
Inouye, M.2
-
13
-
-
25844513164
-
The relationship among gene expression, folding free energy and codon usage bias in Escherichia coli
-
Jia M, Li Y, (2005) The relationship among gene expression, folding free energy and codon usage bias in Escherichia coli. FEBS Lett 579: 5333-5337.
-
(2005)
FEBS Lett
, vol.579
, pp. 5333-5337
-
-
Jia, M.1
Li, Y.2
-
14
-
-
4644280499
-
Solving the riddle of codon usage preferences: a test for translational selection
-
dos Reis M, Savva R, Wernisch L, (2004) Solving the riddle of codon usage preferences: a test for translational selection. Nucleic Acids Res 32: 5036-5044.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5036-5044
-
-
dos Reis, M.1
Savva, R.2
Wernisch, L.3
-
15
-
-
77649245858
-
Translation efficiency is determined by both codon bias and folding energy
-
Tuller T, Waldman YY, Kupiec M, Ruppin E, Translation efficiency is determined by both codon bias and folding energy. Proc Natl Acad Sci U S A 107: 3645-3650.
-
Proc Natl Acad Sci U S A
, vol.107
, pp. 3645-3650
-
-
Tuller, T.1
Waldman, Y.Y.2
Kupiec, M.3
Ruppin, E.4
-
16
-
-
84934438960
-
UNAFold: software for nucleic acid folding and hybridization
-
Markham NR, Zuker M, (2008) UNAFold: software for nucleic acid folding and hybridization. Methods Mol Biol 453: 3-31.
-
(2008)
Methods Mol Biol
, vol.453
, pp. 3-31
-
-
Markham, N.R.1
Zuker, M.2
-
17
-
-
0025144939
-
RNA primary sequence or secondary structure in the translational initiation region controls expression of two variant interferon-beta genes in Escherichia coli
-
Gross G, Mielke C, Hollatz I, Blocker H, Frank R, (1990) RNA primary sequence or secondary structure in the translational initiation region controls expression of two variant interferon-beta genes in Escherichia coli. J Biol Chem 265: 17627-17636.
-
(1990)
J Biol Chem
, vol.265
, pp. 17627-17636
-
-
Gross, G.1
Mielke, C.2
Hollatz, I.3
Blocker, H.4
Frank, R.5
-
18
-
-
14544308803
-
AU-rich sequences within 5′ untranslated leaders enhance translation and stabilize mRNA in Escherichia coli
-
Komarova AV, Tchufistova LS, Dreyfus M, Boni IV, (2005) AU-rich sequences within 5′ untranslated leaders enhance translation and stabilize mRNA in Escherichia coli. J Bacteriol 187: 1344-1349.
-
(2005)
J Bacteriol
, vol.187
, pp. 1344-1349
-
-
Komarova, A.V.1
Tchufistova, L.S.2
Dreyfus, M.3
Boni, I.V.4
-
19
-
-
77649198142
-
A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes
-
Gu W, Zhou T, Wilke CO, A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes. PLoS Comput Biol 6: e100.
-
PLoS Comput Biol
, vol.6
-
-
Gu, W.1
Zhou, T.2
Wilke, C.O.3
-
20
-
-
77951715627
-
An evolutionarily conserved mechanism for controlling the efficiency of protein translation
-
Tuller T, Carmi A, Vestsigian K, Navon S, Dorfan Y, et al. An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell 141: 344-354.
-
Cell
, vol.141
, pp. 344-354
-
-
Tuller, T.1
Carmi, A.2
Vestsigian, K.3
Navon, S.4
Dorfan, Y.5
-
21
-
-
0027432923
-
Reduced synonymous substitution rate at the start of enterobacterial genes
-
Eyre-Walker A, Bulmer M, (1993) Reduced synonymous substitution rate at the start of enterobacterial genes. Nucleic Acids Res 21: 4599-4603.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 4599-4603
-
-
Eyre-Walker, A.1
Bulmer, M.2
-
22
-
-
82855162073
-
Composite Effects of the Coding Sequences Determinants on the Speed and Density of Ribosomes
-
Genome Biology, (In Press)
-
Tuller T, Veksler I, Gazit N, Kupiec M, Ruppin E, et al. Composite Effects of the Coding Sequences Determinants on the Speed and Density of Ribosomes. Genome Biology (In Press).
-
-
-
Tuller, T.1
Veksler, I.2
Gazit, N.3
Kupiec, M.4
Ruppin, E.5
-
23
-
-
0036719292
-
mRNA decay in Escherichia coli comes of age
-
discussion 4657
-
Kushner SR, (2002) mRNA decay in Escherichia coli comes of age. J Bacteriol 184: 4658-4665; discussion 4657.
-
(2002)
J Bacteriol
, vol.184
, pp. 4658-4665
-
-
Kushner, S.R.1
-
24
-
-
70349488520
-
Applications of nucleic acid chaperone activity of CspA and its homologues
-
Phadtare S, Zhu L, Uemori T, Mukai H, Kato I, et al. (2009) Applications of nucleic acid chaperone activity of CspA and its homologues. J Mol Microbiol Biotechnol 17: 110-117.
-
(2009)
J Mol Microbiol Biotechnol
, vol.17
, pp. 110-117
-
-
Phadtare, S.1
Zhu, L.2
Uemori, T.3
Mukai, H.4
Kato, I.5
-
25
-
-
0344237338
-
Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome
-
dos Reis M, Wernisch L, Savva R, (2003) Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome. Nucleic Acids Res 31: 6976-6985.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6976-6985
-
-
dos Reis, M.1
Wernisch, L.2
Savva, R.3
-
26
-
-
0032541436
-
Ribosomes inhibit an RNase E cleavage which induces the decay of the rpsO mRNA of Escherichia coli
-
Braun F, Le Derout J, Regnier P, (1998) Ribosomes inhibit an RNase E cleavage which induces the decay of the rpsO mRNA of Escherichia coli. Embo J 17: 4790-4797.
-
(1998)
Embo J
, vol.17
, pp. 4790-4797
-
-
Braun, F.1
Le Derout, J.2
Regnier, P.3
-
27
-
-
0034194572
-
Hfq (HF1) stimulates ompA mRNA decay by interfering with ribosome binding
-
Vytvytska O, Moll I, Kaberdin VR, von Gabain A, Blasi U, (2000) Hfq (HF1) stimulates ompA mRNA decay by interfering with ribosome binding. Genes Dev 14: 1109-1118.
-
(2000)
Genes Dev
, vol.14
, pp. 1109-1118
-
-
Vytvytska, O.1
Moll, I.2
Kaberdin, V.R.3
von Gabain, A.4
Blasi, U.5
-
28
-
-
77955102352
-
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, et al. (2010) Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329: 533-538.
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
-
29
-
-
13444283630
-
Interaction network containing conserved and essential protein complexes in Escherichia coli
-
Butland G, Peregrin-Alvarez JM, Li J, Yang W, Yang X, et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433: 531-537.
-
(2005)
Nature
, vol.433
, pp. 531-537
-
-
Butland, G.1
Peregrin-Alvarez, J.M.2
Li, J.3
Yang, W.4
Yang, X.5
-
30
-
-
3042849253
-
Biased biological functions of horizontally transferred genes in prokaryotic genomes
-
Nakamura Y, Itoh T, Matsuda H, Gojobori T, (2004) Biased biological functions of horizontally transferred genes in prokaryotic genomes. Nat Genet 36: 760-766.
-
(2004)
Nat Genet
, vol.36
, pp. 760-766
-
-
Nakamura, Y.1
Itoh, T.2
Matsuda, H.3
Gojobori, T.4
-
31
-
-
0032482924
-
Molecular archaeology of the Escherichia coli genome
-
Lawrence JG, Ochman H, (1998) Molecular archaeology of the Escherichia coli genome. Proc Natl Acad Sci U S A 95: 9413-9417.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 9413-9417
-
-
Lawrence, J.G.1
Ochman, H.2
|