메뉴 건너뛰기




Volumn 42, Issue 14, 2014, Pages 9171-9181

The effect of tRNA levels on decoding times of mRNA codons

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; TRANSFER RNA;

EID: 84906235471     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku646     Document Type: Article
Times cited : (203)

References (77)
  • 1
    • 64849114915 scopus 로고    scopus 로고
    • Coding-sequence determinants of gene expression in Escherichia coli
    • Kudla, G., Murray, A.W., Tollervey, D. and Plotkin, J.B. (2009) Coding-sequence determinants of gene expression in Escherichia coli. Science, 324, 255-258.
    • (2009) Science , vol.324 , pp. 255-258
    • Kudla, G.1    Murray, A.W.2    Tollervey, D.3    Plotkin, J.B.4
  • 2
    • 77649245858 scopus 로고    scopus 로고
    • Translation efficiency is determined by both codon bias and folding energy
    • Tuller, T., Waldman, Y.Y., Kupiec, M. and Ruppin, E. (2010) Translation efficiency is determined by both codon bias and folding energy. Proc. Natl Acad. Sci. U.S.A., 107, 3645-3650.
    • (2010) Proc. Natl Acad. Sci. U.S.A. , vol.107 , pp. 3645-3650
    • Tuller, T.1    Waldman, Y.Y.2    Kupiec, M.3    Ruppin, E.4
  • 3
    • 78349248644 scopus 로고    scopus 로고
    • On relevance of codon usage to expression of synthetic and natural genes in Escherichia coli
    • Supek, F. and Smuc, T. (2010) On relevance of codon usage to expression of synthetic and natural genes in Escherichia coli. Genetics, 185, 1129-1134.
    • (2010) Genetics , vol.185 , pp. 1129-1134
    • Supek, F.1    Smuc, T.2
  • 4
    • 0348013051 scopus 로고    scopus 로고
    • Hierarchy of sequence-dependent features associated with prokaryotic translation
    • Lithwick, G. and Margalit, H. (2003) Hierarchy of sequence-dependent features associated with prokaryotic translation. Genome Res., 13, 2665-2673.
    • (2003) Genome Res. , vol.13 , pp. 2665-2673
    • Lithwick, G.1    Margalit, H.2
  • 5
    • 84859219968 scopus 로고    scopus 로고
    • Balanced codon usage optimizes eukaryotic translational efficiency
    • Qian, W., Yang, J.R., Pearson, N.M., Maclean, C. and Zhang, J. (2012) Balanced codon usage optimizes eukaryotic translational efficiency. PLoS Genet., 8, e1002603.
    • (2012) PLoS Genet. , vol.8
    • Qian, W.1    Yang, J.R.2    Pearson, N.M.3    Maclean, C.4    Zhang, J.5
  • 6
    • 84867732569 scopus 로고    scopus 로고
    • Speeding with control: Codon usage, tRNAs, and ribosomes
    • Novoa, E.M. and Ribas de Pouplana, L. (2012) Speeding with control: codon usage, tRNAs, and ribosomes. Trends Genet., 28, 574-581.
    • (2012) Trends Genet. , vol.28 , pp. 574-581
    • Novoa, E.M.1    Ribas De Pouplana, L.2
  • 7
    • 78650304100 scopus 로고    scopus 로고
    • Synonymous but not the same: The causes and consequences of codon bias
    • Plotkin, J.B. and Kudla, G. (2011) Synonymous but not the same: the causes and consequences of codon bias. Nat. Rev. Genet., 12, 32-42.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 32-42
    • Plotkin, J.B.1    Kudla, G.2
  • 10
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia, N.T., Lareau, L.F. and Weissman, J.S. (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell, 147, 789-802.
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 11
    • 84860231100 scopus 로고    scopus 로고
    • The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
    • Li, G.W., Oh, E. and Weissman, J.S. (2012) The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature, 484, 538-541.
    • (2012) Nature , vol.484 , pp. 538-541
    • Li, G.W.1    Oh, E.2    Weissman, J.S.3
  • 12
    • 84857770146 scopus 로고    scopus 로고
    • Strong association between mRNA folding strength and protein abundance in S. Cerevisiae
    • Zur, H. and Tuller, T. (2012) Strong association between mRNA folding strength and protein abundance in S. Cerevisiae. EMBO Rep., 13, 272-277.
    • (2012) EMBO Rep. , vol.13 , pp. 272-277
    • Zur, H.1    Tuller, T.2
  • 13
    • 0021239085 scopus 로고
    • Point mutations close to the AUG initiator codon affect the efficiency of translation of rat preproinsulin in vivo
    • Kozak, M. (1984) Point mutations close to the AUG initiator codon affect the efficiency of translation of rat preproinsulin in vivo. Nature, 308, 241-246.
    • (1984) Nature , vol.308 , pp. 241-246
    • Kozak, M.1
  • 14
    • 84880766519 scopus 로고    scopus 로고
    • New universal rules of eukaryotic translation initiation fidelity
    • Zur, H. and Tuller, T. (2013) New universal rules of eukaryotic translation initiation fidelity. PLoS Comput. Biol., 9, e1003136.
    • (2013) PLoS Comput. Biol. , vol.9
    • Zur, H.1    Tuller, T.2
  • 15
    • 0029655282 scopus 로고    scopus 로고
    • Translational efficiency is regulated by the length of the 3′ untranslated region
    • Tanguay, R.L. and Gallie, D.R. (1996) Translational efficiency is regulated by the length of the 3′ untranslated region. Mol. Cell. Biol., 16, 146-156.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 146-156
    • Tanguay, R.L.1    Gallie, D.R.2
  • 17
    • 54249096045 scopus 로고    scopus 로고
    • Electrostatics in the ribosomal tunnel modulate chain elongation rates
    • Lu, J. and Deutsch, C. (2008) Electrostatics in the ribosomal tunnel modulate chain elongation rates. J. Mol. Biol., 384, 73-86.
    • (2008) J. Mol. Biol. , vol.384 , pp. 73-86
    • Lu, J.1    Deutsch, C.2
  • 20
    • 0019474499 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes
    • Ikemura, T. (1981) Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. J. Mol. Biol., 146, 1-21.
    • (1981) J. Mol. Biol. , vol.146 , pp. 1-21
    • Ikemura, T.1
  • 21
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura, T. (1985) Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol., 2, 13-34.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 13-34
    • Ikemura, T.1
  • 22
    • 33846021292 scopus 로고    scopus 로고
    • Tissue-specific differences in human transfer RNA expression
    • Dittmar, K.A., Goodenbour, J.M. and Pan, T. (2006) Tissue-specific differences in human transfer RNA expression. PLoS Genet., 2, e221.
    • (2006) PLoS Genet. , vol.2
    • Dittmar, K.A.1    Goodenbour, J.M.2    Pan, T.3
  • 23
    • 0034237669 scopus 로고    scopus 로고
    • TRNA gene number and codon usage in the C. Elegans genome are co-adapted for optimal translation of highly expressed genes
    • Duret, L. (2000) tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes. Trends Genet., 16, 287-289.
    • (2000) Trends Genet. , vol.16 , pp. 287-289
    • Duret, L.1
  • 25
    • 75149196287 scopus 로고    scopus 로고
    • The mechanism of eukaryotic translation initiation and principles of its regulation
    • Jackson, R.J., Hellen, C.U. and Pestova, T.V. (2010) The mechanism of eukaryotic translation initiation and principles of its regulation. Nat. Rev. Mol. Cell Biol., 11, 113-127.
    • (2010) Nat. Rev. Mol. Cell Biol. , vol.11 , pp. 113-127
    • Jackson, R.J.1    Hellen, C.U.2    Pestova, T.V.3
  • 26
    • 84874722535 scopus 로고    scopus 로고
    • Non-optimal codon usage is a mechanism to achieve circadian clock conditionality
    • Xu, Y., Ma, P., Shah, P., Rokas, A., Liu, Y. and Johnson, C.H. (2013) Non-optimal codon usage is a mechanism to achieve circadian clock conditionality. Nature, 495, 116-120.
    • (2013) Nature , vol.495 , pp. 116-120
    • Xu, Y.1    Ma, P.2    Shah, P.3    Rokas, A.4    Liu, Y.5    Johnson, C.H.6
  • 27
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia, N.T., Ghaemmaghami, S., Newman, J.R. and Weissman, J.S. (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science, 324, 218-223.
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.3    Weissman, J.S.4
  • 30
    • 84859174156 scopus 로고    scopus 로고
    • A role for tRNA modifications in genome structure and codon usage
    • Novoa, E.M., Pavon-Eternod, M., Pan, T. and Ribas de Pouplana, L. (2012) A role for tRNA modifications in genome structure and codon usage. Cell, 149, 202-213.
    • (2012) Cell , vol.149 , pp. 202-213
    • Novoa, E.M.1    Pavon-Eternod, M.2    Pan, T.3    Ribas De Pouplana, L.4
  • 32
    • 80052964856 scopus 로고    scopus 로고
    • Understanding the contribution of synonymous mutations to human disease
    • Sauna, Z.E. and Kimchi-Sarfaty, C. (2011) Understanding the contribution of synonymous mutations to human disease. Nat. Rev. Genet., 12, 683-691.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 683-691
    • Sauna, Z.E.1    Kimchi-Sarfaty, C.2
  • 33
    • 31144465926 scopus 로고    scopus 로고
    • Hearing silence: Non-neutral evolution at synonymous sites in mammals
    • Chamary, J.V., Parmley, J.L. and Hurst, L.D. (2006) Hearing silence: non-neutral evolution at synonymous sites in mammals. Nat. Rev. Genet., 7, 98-108.
    • (2006) Nat. Rev. Genet. , vol.7 , pp. 98-108
    • Chamary, J.V.1    Parmley, J.L.2    Hurst, L.D.3
  • 34
    • 84873570699 scopus 로고    scopus 로고
    • Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding
    • Pechmann, S. and Frydman, J. (2013) Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding. Nat. Struct. Mol. Biol., 20, 237-243.
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 237-243
    • Pechmann, S.1    Frydman, J.2
  • 35
    • 47549097539 scopus 로고    scopus 로고
    • Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
    • Drummond, D.A. and Wilke, C.O. (2008) Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell, 134, 341-352.
    • (2008) Cell , vol.134 , pp. 341-352
    • Drummond, D.A.1    Wilke, C.O.2
  • 36
    • 84874683740 scopus 로고    scopus 로고
    • Non-optimal codon usage affects expression, structure and function of clock protein FRQ
    • Zhou, M., Guo, J., Cha, J., Chae, M., Chen, S., Barral, J.M., Sachs, M.S. and Liu, Y. (2013) Non-optimal codon usage affects expression, structure and function of clock protein FRQ. Nature, 495, 111-115.
    • (2013) Nature , vol.495 , pp. 111-115
    • Zhou, M.1    Guo, J.2    Cha, J.3    Chae, M.4    Chen, S.5    Barral, J.M.6    Sachs, M.S.7    Liu, Y.8
  • 37
    • 84870527178 scopus 로고    scopus 로고
    • Contributions of mRNA abundance, ribosome loading, and post- or peri-translational effects to temporal repression of C. Elegans heterochronic miRNA targets
    • Stadler, M., Artiles, K., Pak, J. and Fire, A. (2012) Contributions of mRNA abundance, ribosome loading, and post- or peri-translational effects to temporal repression of C. elegans heterochronic miRNA targets. Genome Res., 22, 2418-2426.
    • (2012) Genome Res. , vol.22 , pp. 2418-2426
    • Stadler, M.1    Artiles, K.2    Pak, J.3    Fire, A.4
  • 38
    • 77956024408 scopus 로고    scopus 로고
    • Genome-wide translational profiling by ribosome footprinting
    • Ingolia, N.T. (2010) Genome-wide translational profiling by ribosome footprinting. Methods Enzymol., 470, 119-142.
    • (2010) Methods Enzymol. , vol.470 , pp. 119-142
    • Ingolia, N.T.1
  • 40
    • 0000087973 scopus 로고
    • Characterization of exponentially modified Gaussian peaks in chromatography
    • Grushka, E. (1972) Characterization of exponentially modified Gaussian peaks in chromatography. Anal. Chem., 44, 1733-1738.
    • (1972) Anal. Chem. , vol.44 , pp. 1733-1738
    • Grushka, E.1
  • 41
    • 0016355478 scopus 로고
    • A new look at the statistical model identification
    • IEEE Trans.
    • Akaike, H. (1974) A new look at the statistical model identification. Automatic Control, IEEE Trans., 19, 716-723.
    • (1974) Automatic Control , vol.19 , pp. 716-723
    • Akaike, H.1
  • 42
    • 4644280499 scopus 로고    scopus 로고
    • Solving the riddle of codon usage preferences: A test for translational selection
    • dos Reis, M., Savva, R. and Wernisch, L. (2004) Solving the riddle of codon usage preferences: a test for translational selection. Nucleic Acids Res., 32, 5036-5044.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 5036-5044
    • Dos Reis, M.1    Savva, R.2    Wernisch, L.3
  • 43
    • 84921465265 scopus 로고    scopus 로고
    • Modeling the efficiency of codon-tRNA interactions based on codon usage bias
    • in press
    • Sabi, R. and Tuller, T. (2014) Modeling the efficiency of codon-tRNA interactions based on codon usage bias. DNA Res., in press.
    • (2014) DNA Res.
    • Sabi, R.1    Tuller, T.2
  • 44
    • 42749107428 scopus 로고    scopus 로고
    • Totally asymmetric exclusion process with extended objects: A model for protein synthesis
    • Shaw, L.B., Zia, R.K. and Lee, K.H. (2003) Totally asymmetric exclusion process with extended objects: a model for protein synthesis. Phys. Rev. E Stat. Nonlin. Soft Matter Phys., 68, 021910.
    • (2003) Phys. Rev. E Stat. Nonlin. Soft Matter Phys. , vol.68 , pp. 021910
    • Shaw, L.B.1    Zia, R.K.2    Lee, K.H.3
  • 46
    • 33745220278 scopus 로고    scopus 로고
    • Single-cell proteomic analysis of S. Cerevisiae reveals the architecture of biological noise
    • Newman, J.R., Ghaemmaghami, S., Ihmels, J., Breslow, D.K., Noble, M., DeRisi, J.L. and Weissman, J.S. (2006) Single-cell proteomic analysis of S. Cerevisiae reveals the architecture of biological noise. Nature, 441, 840-846.
    • (2006) Nature , vol.441 , pp. 840-846
    • Newman, J.R.1    Ghaemmaghami, S.2    Ihmels, J.3    Breslow, D.K.4    Noble, M.5    Derisi, J.L.6    Weissman, J.S.7
  • 51
    • 77955102352 scopus 로고    scopus 로고
    • Quantifying E. Coli proteome and transcriptome with single-molecule sensitivity in single cells
    • Taniguchi, Y., Choi, P.J., Li, G.W., Chen, H., Babu, M., Hearn, J., Emili, A. and Xie, X.S. (2010) Quantifying E. Coli proteome and transcriptome with single-molecule sensitivity in single cells. Science, 329, 533-538.
    • (2010) Science , vol.329 , pp. 533-538
    • Taniguchi, Y.1    Choi, P.J.2    Li, G.W.3    Chen, H.4    Babu, M.5    Hearn, J.6    Emili, A.7    Xie, X.S.8
  • 52
    • 33747170146 scopus 로고    scopus 로고
    • Using annotated peptide mass spectrum libraries for protein identification
    • Craig, R., Cortens, J., Fenyo, D. and Beavis, R. (2006) Using annotated peptide mass spectrum libraries for protein identification. J. Proteome Res., 5, 1843-1849.
    • (2006) J. Proteome Res. , vol.5 , pp. 1843-1849
    • Craig, R.1    Cortens, J.2    Fenyo, D.3    Beavis, R.4
  • 53
    • 0021173799 scopus 로고
    • Quantities of individual aminoacyl-tRNA families and their turnover in Escherichia coli
    • Jakubowski, H. and Goldman, E. (1984) Quantities of individual aminoacyl-tRNA families and their turnover in Escherichia coli. J. Bacteriol., 158, 769-776.
    • (1984) J. Bacteriol. , vol.158 , pp. 769-776
    • Jakubowski, H.1    Goldman, E.2
  • 56
    • 0000999123 scopus 로고
    • The advanced theory of statistics
    • 4th edn., Griffin, London
    • Kendall, M. and Stuart, A. (1979) The advanced theory of statistics. Inference and Relationship, 4th edn. 2, Griffin, London, pp. 1.
    • (1979) Inference and Relationship , vol.2 , pp. 1
    • Kendall, M.1    Stuart, A.2
  • 57
    • 84870717729 scopus 로고    scopus 로고
    • Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells
    • Dana, A. and Tuller, T. (2012) Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells. PLoS Comput. Biol., 8, e1002755.
    • (2012) PLoS Comput. Biol. , vol.8
    • Dana, A.1    Tuller, T.2
  • 58
    • 84878820561 scopus 로고    scopus 로고
    • RRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments
    • O'Connor, P.B., Li, G.W., Weissman, J.S., Atkins, J.F. and Baranov, P.V. (2013) rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments. Bioinformatics, 29, 1488-1491.
    • (2013) Bioinformatics , vol.29 , pp. 1488-1491
    • O'Connor, P.B.1    Li, G.W.2    Weissman, J.S.3    Atkins, J.F.4    Baranov, P.V.5
  • 59
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
    • Dong, H., Nilsson, L. and Kurland, C.G. (1996) Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J. Mol. Biol., 260, 649-663.
    • (1996) J. Mol. Biol. , vol.260 , pp. 649-663
    • Dong, H.1    Nilsson, L.2    Kurland, C.G.3
  • 60
    • 0032882170 scopus 로고    scopus 로고
    • Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: Gene expression level and species-specific diversity of codon usage based on multivariate analysis
    • Kanaya, S., Yamada, Y., Kudo, Y. and Ikemura, T. (1999) Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene, 238, 143-155.
    • (1999) Gene , vol.238 , pp. 143-155
    • Kanaya, S.1    Yamada, Y.2    Kudo, Y.3    Ikemura, T.4
  • 61
    • 8744310123 scopus 로고    scopus 로고
    • Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization
    • Rocha, E.P. (2004) Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization. Genome Res., 14, 2279-2286.
    • (2004) Genome Res. , vol.14 , pp. 2279-2286
    • Rocha, E.P.1
  • 62
    • 0023650543 scopus 로고
    • The codon Adaptation Index - A measure of directional synonymous codon usage bias, and its potential applications
    • Sharp, P.M. and Li, W.H. (1987) The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res., 15, 1281-1295.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 63
    • 84894646451 scopus 로고    scopus 로고
    • Translation elongation can control translation initiation on eukaryotic mRNAs
    • Chu, D., Kazana, E., Bellanger, N., Singh, T., Tuite, M.F. and Haar, T. (2014) Translation elongation can control translation initiation on eukaryotic mRNAs. EMBO J., 33, 21-34.
    • (2014) EMBO J. , vol.33 , pp. 21-34
    • Chu, D.1    Kazana, E.2    Bellanger, N.3    Singh, T.4    Tuite, M.F.5    Haar, T.6
  • 64
    • 2542595557 scopus 로고    scopus 로고
    • Study of faecal shedding of Clostridium difficile in horses treated with penicillin
    • Gustafsson, A., Baverud, V., Gunnarsson, A., Pringle, J. and Franklin, A. (2004) Study of faecal shedding of Clostridium difficile in horses treated with penicillin. Equine Vet. J., 36, 180-182.
    • (2004) Equine Vet. J. , vol.36 , pp. 180-182
    • Gustafsson, A.1    Baverud, V.2    Gunnarsson, A.3    Pringle, J.4    Franklin, A.5
  • 65
    • 84875465945 scopus 로고    scopus 로고
    • Positively charged residues are the major determinants of ribosomal velocity
    • Charneski, C.A. and Hurst, L.D. (2013) Positively charged residues are the major determinants of ribosomal velocity. PLoS Biol., 11, e1001508.
    • (2013) PLoS Biol. , vol.11
    • Charneski, C.A.1    Hurst, L.D.2
  • 66
    • 84876348105 scopus 로고    scopus 로고
    • Sounds of silence: Synonymous nucleotides as a key to biological regulation and complexity
    • Shabalina, S.A., Spiridonov, N.A. and Kashina, A. (2013) Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity. Nucleic Acids Res., 41, 2073-2094.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 2073-2094
    • Shabalina, S.A.1    Spiridonov, N.A.2    Kashina, A.3
  • 67
    • 0031468437 scopus 로고    scopus 로고
    • Cotranslational protein folding
    • Fedorov, A.N. and Baldwin, T.O. (1997) Cotranslational protein folding. J. Biol. Chem., 272, 32715-32718.
    • (1997) J. Biol. Chem. , vol.272 , pp. 32715-32718
    • Fedorov, A.N.1    Baldwin, T.O.2
  • 68
    • 66849109240 scopus 로고    scopus 로고
    • The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins
    • Kramer, G., Boehringer, D., Ban, N. and Bukau, B. (2009) The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins. Nat. Struct. Mol. Biol., 16, 589-597.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 589-597
    • Kramer, G.1    Boehringer, D.2    Ban, N.3    Bukau, B.4
  • 69
    • 58149199728 scopus 로고    scopus 로고
    • A pause for thought along the co-translational folding pathway
    • Komar, A.A. (2009) A pause for thought along the co-translational folding pathway. Trends Biochem. Sci., 34, 16-24.
    • (2009) Trends Biochem. Sci. , vol.34 , pp. 16-24
    • Komar, A.A.1
  • 70
    • 79551690253 scopus 로고    scopus 로고
    • Folding at the birth of the nascent chain: Coordinating translation with co-translational folding
    • Zhang, G. and Ignatova, Z. (2011) Folding at the birth of the nascent chain: coordinating translation with co-translational folding. Curr. Opin. Struct. Biol., 21, 25-31.
    • (2011) Curr. Opin. Struct. Biol. , vol.21 , pp. 25-31
    • Zhang, G.1    Ignatova, Z.2
  • 71
    • 84867379923 scopus 로고    scopus 로고
    • Concerted action of the ribosome and the associated chaperone trigger factor confines nascent polypeptide folding
    • Hoffmann, A., Becker, A.H., Zachmann-Brand, B., Deuerling, E., Bukau, B. and Kramer, G. (2012) Concerted action of the ribosome and the associated chaperone trigger factor confines nascent polypeptide folding. Mol. Cell, 48, 63-74.
    • (2012) Mol. Cell , vol.48 , pp. 63-74
    • Hoffmann, A.1    Becker, A.H.2    Zachmann-Brand, B.3    Deuerling, E.4    Bukau, B.5    Kramer, G.6
  • 72
    • 0028880533 scopus 로고
    • Kinetics of translation of gamma B crystallin and its circularly permutated variant in an in vitro cell-free system: Possible relations to codon distribution and protein folding
    • Komar, A.A. and Jaenicke, R. (1995) Kinetics of translation of gamma B crystallin and its circularly permutated variant in an in vitro cell-free system: possible relations to codon distribution and protein folding. FEBS Lett., 376, 195-198.
    • (1995) FEBS Lett. , vol.376 , pp. 195-198
    • Komar, A.A.1    Jaenicke, R.2
  • 73
    • 62049083910 scopus 로고    scopus 로고
    • Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
    • Zhang, G., Hubalewska, M. and Ignatova, Z. (2009) Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat. Struct. Mol. Biol., 16, 274-280.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 274-280
    • Zhang, G.1    Hubalewska, M.2    Ignatova, Z.3
  • 74
    • 84866449925 scopus 로고    scopus 로고
    • Prediction of variable translation rate effects on cotranslational protein folding
    • O'Brien, E.P., Vendruscolo, M. and Dobson, C.M. (2012) Prediction of variable translation rate effects on cotranslational protein folding. Nat. Commun., 3, 868.
    • (2012) Nat. Commun. , vol.3 , pp. 868
    • O'Brien, E.P.1    Vendruscolo, M.2    Dobson, C.M.3
  • 75
    • 84891871414 scopus 로고    scopus 로고
    • Kinetic modelling indicates that fast-translating codons can coordinate cotranslational protein folding by avoiding misfolded intermediates
    • O'Brien, E.P., Vendruscolo, M. and Dobson, C.M. (2014) Kinetic modelling indicates that fast-translating codons can coordinate cotranslational protein folding by avoiding misfolded intermediates. Nat. Commun., 5, 2988.
    • (2014) Nat. Commun. , vol.5 , pp. 2988
    • O'Brien, E.P.1    Vendruscolo, M.2    Dobson, C.M.3
  • 76
    • 0019949369 scopus 로고
    • Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs
    • Ikemura, T. (1982) Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs. J. Mol. Biol., 158, 573-597.
    • (1982) J. Mol. Biol. , vol.158 , pp. 573-597
    • Ikemura, T.1
  • 77
    • 0023126266 scopus 로고
    • Coevolution of codon usage and transfer RNA abundance
    • Bulmer, M. (1987) Coevolution of codon usage and transfer RNA abundance. Nature, 325, 728-730. and Development
    • (1987) Nature , vol.325 , pp. 728-730
    • Bulmer, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.