Proton transfer reaction–mass spectrometry: online and rapid determination of volatile organic compounds of microbial origin

Applied Microbiology and Biotechnology

Volumn 99, Issue 9, 2015, Pages 3787-3795

  Romano, Andrea ^a   Capozzi, Vittorio ^b   Spano, Giuseppe ^b   Biasioli, Franco ^a  

^a RESEARCH AND INNOVATION CENTRE   (Italy)

^b UNIVERSITY OF FOGGIA   (Italy)

Author keywords

Bacteria; Mass spectrometry; Microorganism; PTR MS; VOC; Volatile organic compound

Indexed keywords

BACTERIA; CHEMICAL ANALYSIS; GAS CHROMATOGRAPHY; INDUSTRIAL RESEARCH; MASS SPECTROMETRY; MEDICAL APPLICATIONS; MICROORGANISMS; ORGANIC COMPOUNDS; PHILOSOPHICAL ASPECTS; SPECTROMETRY; VOLATILE ORGANIC COMPOUNDS;

ANALYTICAL TOOL; CHEMICAL INFORMATION; DIRECT MEASUREMENT; MICROBIAL CULTURE; MICROBIAL ORIGINS; PROTON TRANSFER REACTIONS; PTR-MS; VOC ANALYSIS;

PROTON TRANSFER;

VOLATILE ORGANIC COMPOUND;

BACTERIUM; INTERNET; MASS SPECTROMETRY; PHILOSOPHY; SAMPLING; VOLATILE ORGANIC COMPOUND;

BACTERIUM CULTURE; BIOPROCESS; FOOD SPOILAGE; FUNGUS CULTURE; MASS SPECTROMETRY; NONHUMAN; PROCESS MONITORING; PROTON TRANSPORT; REVIEW; MICROBIOLOGICAL EXAMINATION; PROCEDURES;

MASS SPECTROMETRY; MICROBIOLOGICAL TECHNIQUES; VOLATILE ORGANIC COMPOUNDS;

EID: 84938198310     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-015-6528-y     Document Type: Review

References (61)

1. Abanda-Nkpwatt D, Musch M, Tschiersch J, Boettner M, Schwab W (2006) Molecular interaction between Methylobacterium extorquens and seedlings: growth promotion, methanol consumption, and localization of the methanol emission site. J Exp Bot 57:4025–4032
2. Bäck J, Aaltonen H, Hellén H, Kajos MK, Patokoski J, Taipale R, Pumpanen J, Heinonsalo J (2010) Variable emissions of microbial volatile organic compounds (MVOCs) from root-associated fungi isolated from Scots pine. Atmos Environ 44:3651–3659
3. Blake RS, Whyte C, Hughes CO, Ellis AM, Monks PS (2004) Demonstration of proton-transfer reaction time-of-flight mass spectrometry for real-time analysis of trace volatile organic compounds. Anal Chem 76:3841–3845
4. Blasioli S, Biondi E, Samudrala D, Spinelli F, Cellini A, Bertaccini A, Cristescu SM, Braschi I (2014) Identification of volatile markers in potato brown rot and ring rot by combined GC-MS and PTR-MS techniques: study on in vitro and in vivo samples. J Agr Food Chem 62:337–347
5. Borneman AR, Schmidt SA, Pretorius IS (2013) At the cutting-edge of grape and wine biotechnology. Trends Genet 29:263–271
6. Braden B, Lembcke B, Kuker W, Caspary WF (2007) 13C-breath tests: current state of the art and future directions. Dig Liver Dis 39:795–805
7. Bunge M, Araghipour N, Mikoviny T, Dunkl J, Schnitzhofer R, Hansel A, Schinner F, Wisthaler A, Margesin R, Mark TD (2008) On-line monitoring of microbial volatile metabolites by proton transfer reaction-mass spectrometry. Appl Environ Microbiol 74:2179–2186
8. Capozzi V, Spano G (2011) Food microbial biodiversity and “Microbes of Protected Origin”. Front Microbiol 2:237
9. Capozzi V, Russo P, Beneduce L, Weidmann S, Grieco F, Guzzo J, Spano G (2010) Technological properties of Oenococcus oeni strains isolated from typical southern Italian wines. Lett Appl Microbiol 50:327–334
10. Crespo E, Cristescu SM, de Ronde H, Kuijper S, Kolk AHJ, Anthony RM, Harren FJM (2011) Proton transfer reaction mass spectrometry detects rapid changes in volatile metabolite emission by Mycobacterium smegmatis after the addition of specific antimicrobial agents. J Microbiol Methods 86:8–15
11. Critchley A, Elliott TS, Harrison G, Mayhew CA, Thompson JM, Worthington T (2004) The proton transfer reaction mass spectrometer and its use in medical science: applications to drug assays and the monitoring of bacteria. Int J Mass Spectrom 239:235–241
12. Di Toro MR, Capozzi V, Beneduce L, Alexandre H, Tristezza M, Durante M, Tufariello M, Grieco F, Spano G (2015) Intraspecific biodiversity and “spoilage potential” of Brettanomyces bruxellensis in Apulian wines. LWT-Food Sci Technol 60:102–108
13. Dickschat JS, Martens T, Brinkhoff T, Simon M, Schulz S (2005) Volatiles Released by a Streptomyces Species Isolated from the North Sea. Chem Biodivers 2:837–865
14. Effmert U, Kalderás J, Warnke R, Piechulla B (2012) Volatile mediated interactions between bacteria and fungi in the soil. J Chem Ecol 38:665–703
15. Hansel A, Jordan A, Holzinger R, Prazeller P, Vogel W, Lindinger W (1995) Proton transfer reaction mass spectrometry: on-line trace gas analysis at the ppb level. Int J Mass Spectrom 149–150:609–619
16. Heddergott C, Calvo AM, Latgé JP (2014) The volatome of Aspergillus fumigatus. Eukaryotic Cell 13:1014–1025
17. Jaksch D, Margesin R, Mikoviny T, Skalny JD, Hartungen E, Schinner F, Mason NJ, Märk TD (2004) The effect of ozone treatment on the microbial contamination of pork meat measured by detecting the emissions using PTR-MS and by enumeration of microorganisms. Int J Mass Spectrom 239:209–214
18. Jolly NP, Varela C, Pretorius IS (2014) Not your ordinary yeast: non-Saccharomyces yeasts in wine production uncovered. FEMS Yeast Res 14:215–237
19. Jordan A, Haidacher S, Hanel G, Hartungen E, Märk L, Seehauser H, Schottkowsky R, Sulzer P, Märk TD (2009) A high resolution and high sensitivity proton-transfer-reaction time-of-flight mass spectrometer (PTR-TOF-MS). Int J Mass Spectrom 286:122–128
20. Jünger M, Vautz W, Kuhns M, Hofmann L, Ulbricht S, Baumbach JI, Quintel M, Perl T (2012) Ion mobility spectrometry for microbial volatile organic compounds: a new identification tool for human pathogenic bacteria. Appl Microbiol Biotechnol 93:2603–2614
21. Kai M, Effmert U, Berg G, Piechulla B (2007) Volatiles of bacterial antagonists inhibit mycelial growth of the plant pathogen Rhizoctonia solani. Arch Microbiol 187:351–360
22. Kai M, Haustein M, Molina F, Petri A, Scholz B, Piechulla B (2009) Bacterial volatiles and their action potential. Appl Microbiol Biotechnol 81:1001–1012
23. Kai M, Crespo E, Cristescu SM, Harren FJM, Francke W, Piechulla B (2010) Serratia odorifera: analysis of volatile emission and biological impact of volatile compounds on Arabidopsis thaliana. Appl Microbiol Biotechnol 88:965–976
24. Kim JL, Elfman L, Mi Y, Wieslander G, Smedje G, Norbäck D (2007) Indoor molds, bacteria, microbial volatile organic compounds and plasticizers in schools – associations with asthma and respiratory symptoms in pupils. Indoor Air 17:153–163
25. Kim TG, Lee E-H, Cho K-S (2012) Effects of nonmethane volatile organic compounds on microbial community of methanotrophic biofilter. Appl Microbiol Biotechnol 97:6549–6559
26. Korpi A, Järnberg J, Pasanen A-L (2009) Microbial volatile organic compounds. Crit Rev Toxicol 39:139–193
27. Kuppusami S, Clokie MRJ, Panayi T, Ellis AM, Monks PS (2015) Metabolite profiling of Clostridium difficile ribotypes using small molecular weight volatile organic compounds. Metabolomics 11:251–260
28. Kviatkovski I, Chernin L, Yarnitzky T, Frumin I, Sobel N, Helman Y (2015) Pseudomonas aeruginosa activates the quorum sensing LuxR response regulator through secretion of 2-aminoacetophenone. Chem Commun. doi:10.1039/C4CC10393A
29. Lemfack MC, Nickel J, Dunkel M, Preissner R, Piechulla B (2014) mVOC: a database of microbial volatiles. Nucl Acids Res 42:D744–D748
30. Lindinger W, Jordan A (1998) Proton-transfer-reaction mass spectrometry (PTR–MS): on-line monitoring of volatile organic compounds at pptv levels. Chem Soc Rev 27:347
31. Luchner M, Gutmann R, Bayer K, Dunkl J, Hansel A, Herbig J, Singer W, Strobl F, Winkler K, Striedner G (2012) Implementation of proton transfer reaction-mass spectrometry (PTR-MS) for advanced bioprocess monitoring. Biotechnol Bioprocess Eng 109:3059–3069
32. Makhoul S, Romano A, Cappellin L, Spano G, Capozzi V, Benozzi E, Märk TD, Aprea E, Gasperi F, El-Nakat H, Guzzo J, Biasioli F (2014) Proton-transfer-reaction mass spectrometry for the study of the production of volatile compounds by bakery yeast starters: PTR-MS study of bakery yeast starters. J Mass Spectrom 49:850–859
33. Mallette ND, Knighton WB, Strobel GA, Carlson RP, Peyton BM (2012) Resolution of volatile fuel compound profiles from Ascocoryne sarcoides: a comparison by proton transfer reaction-mass spectrometry and solid phase microextraction gas chromatography-mass spectrometry. AMB Express 2:23
34. Mayr D, Margesin R, Klingsbichel E, Hartungen E, Jenewein D, Schinner F, Mark TD (2003a) Rapid detection of meat spoilage by measuring volatile organic compounds by using proton transfer reaction mass spectrometry. Appl Environ Microbiol 69:4697–4705
35. Mayr D, Margesin R, Schinner F, Märk T (2003b) Detection of the spoiling of meat using PTR–MS. Int J Mass Spectrom 223–224:229–235
36. Mayrhofer S, Mikoviny T, Waldhuber S, Wagner AO, Innerebner G, Franke-Whittle IH, Märk TD, Hansel A, Insam H (2006) Microbial community related to volatile organic compound (VOC) emission in household biowaste. Environ Microbiol 8:1960–1974
37. Minerdi D, Bossi S, Maffei ME, Gullino ML, Garibaldi A (2011) Fusarium oxysporum and its bacterial consortium promote lettuce growth and expansin A5 gene expression through microbial volatile organic compound (MVOC) emission. FEMS Microbiol Ecol 76:342–351
38. Morath SU, Hung R, Bennett JW (2012) Fungal volatile organic compounds: a review with emphasis on their biotechnological potential. Fungal Biol Rev 26:73–83
39. Nawrath T, Mgode GF, Weetjens B, Kaufmann SHE, Schulz S (2012) The volatiles of pathogenic and nonpathogenic mycobacteria and related bacteria. Beilstein J Org Chem 8:290–299
40. O’Hara M, Mayhew CA (2009) A preliminary comparison of volatile organic compounds in the headspace of cultures of Staphylococcus aureus grown in nutrient, dextrose and brain heart bovine broths measured using a proton transfer reaction mass spectrometer. J Breath Res 3:027001
41. Özdestan Ö, van Ruth SM, Alewijn M, Koot A, Romano A, Cappellin L, Biasioli F (2013) Differentiation of specialty coffees by proton transfer reaction-mass spectrometry. Food Res Int 53:433–439
42. Pagans E, Font X, Sánchez A (2006) Emission of volatile organic compounds from composting of different solid wastes: abatement by biofiltration. J Hazard Mater 131:179–186
43. Papurello D, Soukoulis C, Schuhfried E, Cappellin L, Gasperi F, Silvestri S, Santarelli M, Biasioli F (2012) Monitoring of volatile compound emissions during dry anaerobic digestion of the organic fraction of municipal solid waste by Proton Transfer Reaction Time-of-Flight Mass Spectrometry. Bioresour Technol 126:254–265
44. Rabe P, Citron CA, Dickschat JS (2013) Volatile terpenes from actinomycetes: a biosynthetic study correlating chemical analyses to genome data. Chembiochem 14:2345–2354
45. Schmidberger T, Gutmann R, Bayer K, Kronthaler J, Huber R (2014) Advanced online monitoring of cell culture off-gas using proton transfer reaction mass spectrometry. Biotechnol Progr 30:496–504
46. Schulz S, Dickschat JS (2007) Bacterial volatiles: the smell of small organisms. Nat Prod Rep 24:814–842
47. Seewald MSA, Singer W, Knapp BA, Franke-Whittle IH, Hansel A, Insam H (2010) Substrate-induced volatile organic compound emissions from compost-amended soils. Biol Fert Soils 46:371–382
48. Silcock P, Alothman M, Zardin E, Heenan S, Siefarth C, Bremer PJ, Beauchamp J (2014) Microbially induced changes in the volatile constituents of fresh chilled pasteurised milk during storage. Food Packaging and Shelf Life 2:81–90
49. Soukoulis C, Aprea E, Biasioli F, Cappellin L, Schuhfried E, Märk TD, Gasperi F (2010) Proton transfer reaction time-of-flight mass spectrometry monitoring of the evolution of volatile compounds during lactic acid fermentation of milk. Rapid Commun Mass Spectrom 24:2127–2134
50. Splivallo R, Ebeler SE (2015) Sulfur volatiles of microbial origin are key contributors to human-sensed truffle aroma. Appl Microbiol Biotechnol 99:2583–92
51. Stotzky G, Schenck S (1976) Volatile organic compounds and microorganisms. CRC Crit Rev Microbiol 4:333–382
52. Strobel GA, Knighton B, Kluck K, Ren Y, Livinghouse T, Griffin M, Spakowicz D, Sears J (2008) The production of myco-diesel hydrocarbons and their derivatives by the endophytic fungus Gliocladium roseum (NRRL 50072). Microbiology 154:3319–3328
53. Sumby KM, Grbin PR, Jiranek V (2014) Implications of new research and technologies for malolactic fermentation in wine. Appl Microbiol Biotechnol 98:8111–8132
54. Swiegers JH, Bartowsky EJ, Henschke PA, Pretorius IS (2005) Yeast and bacterial modulation of wine aroma and flavour. Aust J Grape Wine Res 11:139–173
55. Tait E, Perry JD, Stanforth SP, Dean JR (2014) Bacteria detection based on the evolution of enzyme-generated volatile organic compounds: Determination of Listeria monocytogenes in milk samples. Anal Chim Acta 848:80–87
56. Thorn RMS, Greenman J (2012) Microbial volatile compounds in health and disease conditions. J Breath Res 6:024001
57. Tristezza M, Vetrano C, Bleve G, Spano G, Capozzi V, Logrieco A, Mita G, Grieco F (2013) Biodiversity and safety aspects of yeast strains characterized from vineyards and spontaneous fermentations in the Apulia Region, Italy. Food Microbiol 36:335–342
58. Tsevdou M, Soukoulis C, Cappellin L, Gasperi F, Taoukis PS, Biasioli F (2013) Monitoring the effect of high pressure and transglutaminase treatment of milk on the evolution of flavour compounds during lactic acid fermentation using PTR-ToF-MS. Food Chem 138:2159–2167
59. Weise T, Kai M, Gummesson A, Troeger A, von Reuß S, Piepenborn S, Kosterka F, Sklorz M, Zimmermann R, Francke W, Piechulla B (2012) Volatile organic compounds produced by the phytopathogenic bacterium Xanthomonas campestris pv. vesicatoria 85-10. Beilstein J Org Chem 8:579–596
60. Zehm S, Schweinitz S, Würzner R, Colvin HP, Rieder J (2012) Detection of Candida albicans by mass spectrometric fingerprinting. Curr Microbiol 64:271–275
61. Zoller HF, Clark WM (1921) The production of volatile fatty acids by bacteria of the dysentery group. J Gen Physiol 3:325–330