-
2
-
-
0032168179
-
The activation gate of a voltage-gated K+ channel can be trapped in the open state by an intersubunit metal bridge
-
Holmgren M, Shin KS, Yellen G (1998) The activation gate of a voltage-gated K+ channel can be trapped in the open state by an intersubunit metal bridge. Neuron 21(3):617-621.
-
(1998)
Neuron
, vol.21
, Issue.3
, pp. 617-621
-
-
Holmgren, M.1
Shin, K.S.2
Yellen, G.3
-
3
-
-
0030795112
-
Gated access to the pore of a voltagedependent K+ channel
-
Liu Y, Holmgren M, Jurman ME, Yellen G (1997) Gated access to the pore of a voltagedependent K+ channel. Neuron 19(1):175-184.
-
(1997)
Neuron
, vol.19
, Issue.1
, pp. 175-184
-
-
Liu, Y.1
Holmgren, M.2
Jurman, M.E.3
Yellen, G.4
-
4
-
-
0032478818
-
The structure of the potassium channel: Molecular basis of K+ conduction and selectivity
-
Doyle DA, et al. (1998) The structure of the potassium channel: Molecular basis of K+ conduction and selectivity. Science 280(5360):69-77.
-
(1998)
Science
, vol.280
, Issue.5360
, pp. 69-77
-
-
Doyle, D.A.1
-
5
-
-
0037198625
-
The open pore conformation of potassium channels
-
Jiang Y, et al. (2002) The open pore conformation of potassium channels. Nature 417(6888):523-526.
-
(2002)
Nature
, vol.417
, Issue.6888
, pp. 523-526
-
-
Jiang, Y.1
-
6
-
-
0035499447
-
Energetic optimization of ion conduction rate by the K+ selectivity filter
-
Morais-Cabral JH, Zhou Y, MacKinnon R (2001) Energetic optimization of ion conduction rate by the K+ selectivity filter. Nature 414(6859):37-42.
-
(2001)
Nature
, vol.414
, Issue.6859
, pp. 37-42
-
-
Morais-Cabral, J.H.1
Zhou, Y.2
MacKinnon, R.3
-
7
-
-
0035499892
-
Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution
-
Zhou Y, Morais-Cabral JH, Kaufman A, MacKinnon R (2001) Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution. Nature 414(6859):43-48.
-
(2001)
Nature
, vol.414
, Issue.6859
, pp. 43-48
-
-
Zhou, Y.1
Morais-Cabral, J.H.2
Kaufman, A.3
MacKinnon, R.4
-
8
-
-
77950926438
-
Gating in CNGA1 channels. Pflüg
-
Mazzolini M, Marchesi A, Giorgetti A, Torre V (2010) Gating in CNGA1 channels. Pflüg. Arch Eur J Physiol 459(4):547-555.
-
(2010)
Arch Eur J Physiol
, vol.459
, Issue.4
, pp. 547-555
-
-
Mazzolini, M.1
Marchesi, A.2
Giorgetti, A.3
Torre, V.4
-
9
-
-
33645313112
-
CNG and HCN channels: Two peas, one pod
-
Craven KB, Zagotta WN (2006) CNG and HCN channels: Two peas, one pod. Annu Rev Physiol 68:375-401.
-
(2006)
Annu Rev Physiol
, vol.68
, pp. 375-401
-
-
Craven, K.B.1
Zagotta, W.N.2
-
10
-
-
0036301043
-
Cyclic nucleotide-gated ion channels
-
Kaupp UB, Seifert R (2002) Cyclic nucleotide-gated ion channels. Physiol Rev 82(3): 769-824.
-
(2002)
Physiol Rev
, vol.82
, Issue.3
, pp. 769-824
-
-
Kaupp, U.B.1
Seifert, R.2
-
11
-
-
42149189419
-
Gating at the selectivity filter in cyclic nucleotide-gated channels
-
Contreras JE, Srikumar D, Holmgren M (2008) Gating at the selectivity filter in cyclic nucleotide-gated channels. Proc Natl Acad Sci USA 105(9):3310-3314.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.9
, pp. 3310-3314
-
-
Contreras, J.E.1
Srikumar, D.2
Holmgren, M.3
-
12
-
-
0032971038
-
Divalent cation selectivity is a function of gating in native and recombinant cyclic nucleotide-gated ion channels from retinal photoreceptors
-
Hackos DH, Korenbrot JI (1999) Divalent cation selectivity is a function of gating in native and recombinant cyclic nucleotide-gated ion channels from retinal photoreceptors. J Gen Physiol 113(6):799-818.
-
(1999)
J Gen Physiol
, vol.113
, Issue.6
, pp. 799-818
-
-
Hackos, D.H.1
Korenbrot, J.I.2
-
13
-
-
0030778914
-
Single cyclic nucleotide-gated channels locked in different ligand-bound states
-
Ruiz ML, Karpen JW (1997) Single cyclic nucleotide-gated channels locked in different ligand-bound states. Nature 389(6649):389-392.
-
(1997)
Nature
, vol.389
, Issue.6649
, pp. 389-392
-
-
Ruiz, M.L.1
Karpen, J.W.2
-
14
-
-
0033729116
-
The interaction of Na(+) and K(+) in the pore of cyclic nucleotide-gated channels
-
Gamel K, Torre V (2000) The interaction of Na(+) and K(+) in the pore of cyclic nucleotide-gated channels. Biophys J 79(5):2475-2493.
-
(2000)
Biophys J
, vol.79
, Issue.5
, pp. 2475-2493
-
-
Gamel, K.1
Torre, V.2
-
15
-
-
0037250786
-
Influence of permeant ions on gating in cyclic nucleotide-gated channels
-
Holmgren M (2003) Influence of permeant ions on gating in cyclic nucleotide-gated channels. J Gen Physiol 121(1):61-72.
-
(2003)
J Gen Physiol
, vol.121
, Issue.1
, pp. 61-72
-
-
Holmgren, M.1
-
16
-
-
8844242474
-
Effects of permeating ions and cGMP on gating and conductance of rod-type cyclic nucleotide-gated (CNGA1) channels
-
Kusch J, Nache V, Benndorf K (2004) Effects of permeating ions and cGMP on gating and conductance of rod-type cyclic nucleotide-gated (CNGA1) channels. J Physiol 560(Pt 3):605-616.
-
(2004)
J Physiol
, vol.560
, Issue.3
, pp. 605-616
-
-
Kusch, J.1
Nache, V.2
Benndorf, K.3
-
17
-
-
85008940796
-
Multiple mechanisms underlying rectification in retinal cyclic nucleotide-gated (CNGA1) channels
-
Arcangeletti M, Marchesi A, Mazzolini M, Torre V (2013) Multiple mechanisms underlying rectification in retinal cyclic nucleotide-gated (CNGA1) channels. Physiol Rep 1(6):e00148.
-
(2013)
Physiol Rep
, vol.1
, Issue.6
, pp. e00148
-
-
Arcangeletti, M.1
Marchesi, A.2
Mazzolini, M.3
Torre, V.4
-
18
-
-
84864864530
-
Gating of cyclic nucleotide-gated channels is voltage dependent
-
Marchesi A, Mazzolini M, Torre V (2012) Gating of cyclic nucleotide-gated channels is voltage dependent. Nat Commun 3:973.
-
(2012)
Nat Commun
, vol.3
, pp. 973
-
-
Marchesi, A.1
Mazzolini, M.2
Torre, V.3
-
19
-
-
0036566026
-
Molecular architecture of a retinal cGMP-gated channel: The arrangement of the cytoplasmic domains
-
Higgins MK, Weitz D, Warne T, Schertler GFX, Kaupp UB (2002) Molecular architecture of a retinal cGMP-gated channel: The arrangement of the cytoplasmic domains. EMBO J 21(9):2087-2094.
-
(2002)
EMBO J
, vol.21
, Issue.9
, pp. 2087-2094
-
-
Higgins, M.K.1
Weitz, D.2
Warne, T.3
Schertler, G.F.X.4
Kaupp, U.B.5
-
20
-
-
0141831003
-
Structural basis for modulation and agonist specificity of HCN pacemaker channels
-
Zagotta WN, et al. (2003) Structural basis for modulation and agonist specificity of HCN pacemaker channels. Nature 425(6954):200-205.
-
(2003)
Nature
, vol.425
, Issue.6954
, pp. 200-205
-
-
Zagotta, W.N.1
-
21
-
-
84455192507
-
Tetramerization dynamics of C-terminal domain underlies isoform-specific cAMP gating in hyperpolarization-activated cyclic nucleotide-gated channels
-
Lolicato M, et al. (2011) Tetramerization dynamics of C-terminal domain underlies isoform-specific cAMP gating in hyperpolarization-activated cyclic nucleotide-gated channels. J Biol Chem 286(52):44811-44820.
-
(2011)
J Biol Chem
, vol.286
, Issue.52
, pp. 44811-44820
-
-
Lolicato, M.1
-
22
-
-
80052422024
-
Molecular mechanism for 3:1 subunit stoichiometry of rod cyclic nucleotide-gated ion channels
-
Shuart NG, Haitin Y, Camp SS, Black KD, Zagotta WN (2011) Molecular mechanism for 3:1 subunit stoichiometry of rod cyclic nucleotide-gated ion channels. Nat Commun 2:457.
-
(2011)
Nat Commun
, vol.2
, pp. 457
-
-
Shuart, N.G.1
Haitin, Y.2
Camp, S.S.3
Black, K.D.4
Zagotta, W.N.5
-
23
-
-
79551680092
-
Structural studies of ion permeation and Ca2+ blockage of a bacterial channel mimicking the cyclic nucleotide-gated channel pore
-
Derebe MG, Zeng W, Li Y, Alam A, Jiang Y (2011) Structural studies of ion permeation and Ca2+ blockage of a bacterial channel mimicking the cyclic nucleotide-gated channel pore. Proc Natl Acad Sci USA 108(2):592-597.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.2
, pp. 592-597
-
-
Derebe, M.G.1
Zeng, W.2
Li, Y.3
Alam, A.4
Jiang, Y.5
-
24
-
-
84879912778
-
Catalysis of Na+ permeation in the bacterial sodium channel Na(V)Ab
-
Chakrabarti N, et al. (2013) Catalysis of Na+ permeation in the bacterial sodium channel Na(V)Ab. Proc Natl Acad Sci USA 110(28):11331-11336.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.28
, pp. 11331-11336
-
-
Chakrabarti, N.1
-
25
-
-
84895794573
-
Ion conduction and conformational flexibility of a bacterial voltage-gated sodium channel
-
Boiteux C, Vorobyov I, Allen TW (2014) Ion conduction and conformational flexibility of a bacterial voltage-gated sodium channel. Proc Natl Acad Sci USA 111(9): 3454-3459.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.9
, pp. 3454-3459
-
-
Boiteux, C.1
Vorobyov, I.2
Allen, T.W.3
-
26
-
-
84869429646
-
Nonselective conduction in a mutated NaK channel with three cation-binding sites
-
Furini S, Domene C (2012) Nonselective conduction in a mutated NaK channel with three cation-binding sites. Biophys J 103(10):2106-2114.
-
(2012)
Biophys J
, vol.103
, Issue.10
, pp. 2106-2114
-
-
Furini, S.1
Domene, C.2
-
27
-
-
33744459472
-
Toward the structural genomics of complexes: Crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis
-
Strong M, et al. (2006) Toward the structural genomics of complexes: Crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. Proc Natl Acad Sci USA 103(21):8060-8065.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.21
, pp. 8060-8065
-
-
Strong, M.1
-
28
-
-
0027533490
-
The permeability of the cGMP-activated channel to organic cations in retinal rods of the tiger salamander
-
Picco C, Menini A (1993) The permeability of the cGMP-activated channel to organic cations in retinal rods of the tiger salamander. J Physiol 460:741-758.
-
(1993)
J Physiol
, vol.460
, pp. 741-758
-
-
Picco, C.1
Menini, A.2
-
29
-
-
84903289127
-
Machine learning. Clustering by fast search and find of density peaks
-
Rodriguez A, Laio A (2014) Machine learning. Clustering by fast search and find of density peaks. Science 344(6191):1492-1496.
-
(2014)
Science
, vol.344
, Issue.6191
, pp. 1492-1496
-
-
Rodriguez, A.1
Laio, A.2
-
30
-
-
84857770472
-
Multidimensional view of amyloid fibril nucleation in atomistic detail
-
Baftizadeh F, Biarnes X, Pietrucci F, Affinito F, Laio A (2012) Multidimensional view of amyloid fibril nucleation in atomistic detail. J Am Chem Soc 134(8):3886-3894.
-
(2012)
J Am Chem Soc
, vol.134
, Issue.8
, pp. 3886-3894
-
-
Baftizadeh, F.1
Biarnes, X.2
Pietrucci, F.3
Affinito, F.4
Laio, A.5
-
31
-
-
34249071886
-
A bias-exchange approach to protein folding
-
Piana S, Laio A (2007) A bias-exchange approach to protein folding. J Phys Chem B 111(17):4553-4559.
-
(2007)
J Phys Chem B
, vol.111
, Issue.17
, pp. 4553-4559
-
-
Piana, S.1
Laio, A.2
-
32
-
-
84876837158
-
Characterization of the freeenergy landscapes of proteins by NMR-guided metadynamics
-
Granata D, Camilloni C, Vendruscolo M, Laio A (2013) Characterization of the freeenergy landscapes of proteins by NMR-guided metadynamics. Proc Natl Acad Sci USA 110(17):6817-6822.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.17
, pp. 6817-6822
-
-
Granata, D.1
Camilloni, C.2
Vendruscolo, M.3
Laio, A.4
-
33
-
-
80053375679
-
Gating at the selectivity filter of ion channels that conduct Na+ and K+ ions
-
Furini S, Domene C (2011) Gating at the selectivity filter of ion channels that conduct Na+ and K+ ions. Biophys J 101(7):1623-1631.
-
(2011)
Biophys J
, vol.101
, Issue.7
, pp. 1623-1631
-
-
Furini, S.1
Domene, C.2
-
34
-
-
84887802264
-
Sodium and potassium competition in potassium-selective and non-selective channels
-
Sauer DB, Zeng W, Canty J, Lam Y, Jiang Y (2013) Sodium and potassium competition in potassium-selective and non-selective channels. Nat Commun 4:2721.
-
(2013)
Nat Commun
, vol.4
, pp. 2721
-
-
Sauer, D.B.1
Zeng, W.2
Canty, J.3
Lam, Y.4
Jiang, Y.5
-
35
-
-
0032939643
-
Physical origin of selectivity in ionic channels of biological membranes
-
Laio A, Torre V (1999) Physical origin of selectivity in ionic channels of biological membranes. Biophys J 76(1 Pt 1):129-148.
-
(1999)
Biophys J
, vol.76
, Issue.1
, pp. 129-148
-
-
Laio, A.1
Torre, V.2
-
36
-
-
77954515664
-
Structural basis for the coupling between activation and inactivation gates in K(+) channels
-
Cuello LG, et al. (2010) Structural basis for the coupling between activation and inactivation gates in K(+) channels. Nature 466(7303):272-275.
-
(2010)
Nature
, vol.466
, Issue.7303
, pp. 272-275
-
-
Cuello, L.G.1
-
37
-
-
77954485089
-
Structural mechanism of C-type inactivation in K(+) channels
-
Cuello LG, Jogini V, Cortes DM, Perozo E (2010) Structural mechanism of C-type inactivation in K(+) channels. Nature 466(7303):203-208.
-
(2010)
Nature
, vol.466
, Issue.7303
, pp. 203-208
-
-
Cuello, L.G.1
Jogini, V.2
Cortes, D.M.3
Perozo, E.4
-
38
-
-
33745041507
-
Molecular determinants of gating at the potassiumchannel selectivity filter
-
Cordero-Morales JF, et al. (2006) Molecular determinants of gating at the potassiumchannel selectivity filter. Nat Struct Mol Biol 13(4):311-318.
-
(2006)
Nat Struct Mol Biol
, vol.13
, Issue.4
, pp. 311-318
-
-
Cordero-Morales, J.F.1
-
39
-
-
0035018960
-
Dilated and defunct K channels in the absence of K+
-
Loboda A, Melishchuk A, Armstrong C (2001) Dilated and defunct K channels in the absence of K+. Biophys J 80(6):2704-2714.
-
(2001)
Biophys J
, vol.80
, Issue.6
, pp. 2704-2714
-
-
Loboda, A.1
Melishchuk, A.2
Armstrong, C.3
-
40
-
-
84874678833
-
C-type inactivation of voltage-gated K+ channels: Pore constriction or dilation?
-
Hoshi T, Armstrong CM (2013) C-type inactivation of voltage-gated K+ channels: Pore constriction or dilation? J Gen Physiol 141(2):151-160.
-
(2013)
J Gen Physiol
, vol.141
, Issue.2
, pp. 151-160
-
-
Hoshi, T.1
Armstrong, C.M.2
-
41
-
-
84883744307
-
Recovery from slow inactivation in K+ channels is controlled by water molecules
-
Ostmeyer J, Chakrapani S, Pan AC, Perozo E, Roux B (2013) Recovery from slow inactivation in K+ channels is controlled by water molecules. Nature 501(7465):121-124.
-
(2013)
Nature
, vol.501
, Issue.7465
, pp. 121-124
-
-
Ostmeyer, J.1
Chakrapani, S.2
Pan, A.C.3
Perozo, E.4
Roux, B.5
-
42
-
-
79955124042
-
Mechanism for selectivity-inactivation coupling in KcsA potassium channels
-
Cheng WW, McCoy JG, Thompson AN, Nichols CG, Nimigean CM (2011) Mechanism for selectivity-inactivation coupling in KcsA potassium channels. Proc Natl Acad Sci USA 108(13):5272-5277.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.13
, pp. 5272-5277
-
-
Cheng, W.W.1
McCoy, J.G.2
Thompson, A.N.3
Nichols, C.G.4
Nimigean, C.M.5
-
43
-
-
80053638085
-
Protein interactions central to stabilizing the K+ channel selectivity filter in a four-sited configuration for selective K+ permeation
-
Sauer DB, Zeng W, Raghunathan S, Jiang Y (2011) Protein interactions central to stabilizing the K+ channel selectivity filter in a four-sited configuration for selective K+ permeation. Proc Natl Acad Sci USA 108(40):16634-16639.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.40
, pp. 16634-16639
-
-
Sauer, D.B.1
Zeng, W.2
Raghunathan, S.3
Jiang, Y.4
-
44
-
-
17044400911
-
A gate in the selectivity filter of potassium channels
-
Bernèche S, Roux B (2005) A gate in the selectivity filter of potassium channels. Structure 13(4):591-600.
-
(2005)
Structure
, vol.13
, Issue.4
, pp. 591-600
-
-
Bernèche, S.1
Roux, B.2
-
45
-
-
35848958366
-
Molecular driving forces determining potassium channel slow inactivation
-
Cordero-Morales JF, et al. (2007) Molecular driving forces determining potassium channel slow inactivation. Nat Struct Mol Biol 14(11):1062-1069.
-
(2007)
Nat Struct Mol Biol
, vol.14
, Issue.11
, pp. 1062-1069
-
-
Cordero-Morales, J.F.1
-
46
-
-
79959655732
-
A multipoint hydrogenbond network underlying KcsA C-type inactivation
-
Cordero-Morales JF, Jogini V, Chakrapani S, Perozo E (2011) A multipoint hydrogenbond network underlying KcsA C-type inactivation. Biophys J 100(10):2387-2393.
-
(2011)
Biophys J
, vol.100
, Issue.10
, pp. 2387-2393
-
-
Cordero-Morales, J.F.1
Jogini, V.2
Chakrapani, S.3
Perozo, E.4
-
47
-
-
84878259928
-
Polyproline-II helix in proteins: Structure and function
-
Adzhubei AA, Sternberg MJE, Makarov AA (2013) Polyproline-II helix in proteins: Structure and function. J Mol Biol 425(12):2100-2132.
-
(2013)
J Mol Biol
, vol.425
, Issue.12
, pp. 2100-2132
-
-
Adzhubei, A.A.1
Sternberg, M.J.E.2
Makarov, A.A.3
-
48
-
-
84861119854
-
On conduction in a bacterial sodium channel
-
Furini S, Domene C (2012) On conduction in a bacterial sodium channel. PLOS Comput Biol 8(4):e1002476.
-
(2012)
PLOS Comput Biol
, vol.8
, Issue.4
, pp. e1002476
-
-
Furini, S.1
Domene, C.2
-
49
-
-
79551660280
-
Tuning the ion selectivity of tetrameric cation channels by changing the number of ion binding sites
-
Derebe MG, et al. (2011) Tuning the ion selectivity of tetrameric cation channels by changing the number of ion binding sites. Proc Natl Acad Sci USA 108(2):598-602.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.2
, pp. 598-602
-
-
Derebe, M.G.1
-
50
-
-
84901809838
-
Interactions between permeation and gating in the TMEM16B/ anoctamin2 calcium-activated chloride channel
-
Betto G, et al. (2014) Interactions between permeation and gating in the TMEM16B/ anoctamin2 calcium-activated chloride channel. J Gen Physiol 143(6):703-718.
-
(2014)
J Gen Physiol
, vol.143
, Issue.6
, pp. 703-718
-
-
Betto, G.1
-
51
-
-
42649095142
-
TRPV1 shows dynamic ionic selectivity during agonist stimulation
-
Chung MK, Güler AD, Caterina MJ (2008) TRPV1 shows dynamic ionic selectivity during agonist stimulation. Nat Neurosci 11(5):555-564.
-
(2008)
Nat Neurosci
, vol.11
, Issue.5
, pp. 555-564
-
-
Chung, M.K.1
Güler, A.D.2
Caterina, M.J.3
-
52
-
-
77952650740
-
Dynamic changes in the TRPA1 selectivity filter lead to progressive but reversible pore dilation
-
Banke TG, Chaplan SR, Wickenden AD (2010) Dynamic changes in the TRPA1 selectivity filter lead to progressive but reversible pore dilation. Am J Physiol Cell Physiol 298(6):C1457-C1468.
-
(2010)
Am J Physiol Cell Physiol
, vol.298
, Issue.6
, pp. C1457-C1468
-
-
Banke, T.G.1
Chaplan, S.R.2
Wickenden, A.D.3
-
53
-
-
84920843100
-
Permeation and dynamics of an open-activated TRPV1 channel
-
Darré L, Furini S, Domene C (2015) Permeation and dynamics of an open-activated TRPV1 channel. J Mol Biol 427(2):537-549.
-
(2015)
J Mol Biol
, vol.427
, Issue.2
, pp. 537-549
-
-
Darré, L.1
Furini, S.2
Domene, C.3
-
54
-
-
33644874235
-
The integration of macromolecular diffraction data
-
Leslie AGW (2006) The integration of macromolecular diffraction data. Acta Crystallogr D Biol Crystallogr 62(Pt 1):48-57.
-
(2006)
Acta Crystallogr D Biol Crystallogr
, vol.62
, Issue.1
, pp. 48-57
-
-
Leslie, A.G.W.1
-
55
-
-
76449106188
-
Integration, scaling, space-group assignment and post-refinement
-
Kabsch W (2010) Integration, scaling, space-group assignment and post-refinement. Acta Crystallogr D Biol Crystallogr 66(Pt 2):133-144.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, Issue.2
, pp. 133-144
-
-
Kabsch, W.1
-
57
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Number 4
-
Collaborative Computational Project, Number 4 (1994) The CCP4 suite: Programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50(Pt 5):760-763.
-
(1994)
Acta Crystallogr D Biol Crystallogr
, vol.50
, Issue.5
, pp. 760-763
-
-
-
58
-
-
84861425552
-
Linking crystallographic model and data quality
-
Karplus PA, Diederichs K (2012) Linking crystallographic model and data quality. Science 336(6084):1030-1033.
-
(2012)
Science
, vol.336
, Issue.6084
, pp. 1030-1033
-
-
Karplus, P.A.1
Diederichs, K.2
-
59
-
-
0031059039
-
Detecting and overcoming crystal twinning
-
Yeates TO (1997) Detecting and overcoming crystal twinning. Methods Enzymol 276: 344-358.
-
(1997)
Methods Enzymol
, vol.276
, pp. 344-358
-
-
Yeates, T.O.1
-
60
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
Murshudov GN, et al. (2011) REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr D Biol Crystallogr 67(Pt 4):355-367.
-
(2011)
Acta Crystallogr D Biol Crystallogr
, vol.67
, Issue.4
, pp. 355-367
-
-
Murshudov, G.N.1
-
61
-
-
77949535720
-
Features and development of Coot
-
Emsley P, Lohkamp B, Scott WG, Cowtan K (2010) Features and development of Coot. Acta Crystallogr D Biol Crystallogr 66(Pt 4):486-501.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, Issue.4
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
62
-
-
17644392830
-
TM-align: A protein structure alignment algorithm based on the TM-score
-
Zhang Y, Skolnick J (2005) TM-align: A protein structure alignment algorithm based on the TM-score. Nucleic Acids Res 33(7):2302-2309.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.7
, pp. 2302-2309
-
-
Zhang, Y.1
Skolnick, J.2
-
63
-
-
84860284066
-
PDB-REDO: Constructive validation, more than just looking for errors
-
Joosten RP, Joosten K, Murshudov GN, Perrakis A (2012) PDB-REDO: Constructive validation, more than just looking for errors. Acta Crystallogr D Biol Crystallogr 68(Pt 4):484-496.
-
(2012)
Acta Crystallogr D Biol Crystallogr
, vol.68
, Issue.4
, pp. 484-496
-
-
Joosten, R.P.1
Joosten, K.2
Murshudov, G.N.3
Perrakis, A.4
-
64
-
-
34547372334
-
Performance of the general amber force field in modeling aqueous POPC membrane bilayers
-
Jójárt B, Martinek TA (2007) Performance of the general amber force field in modeling aqueous POPC membrane bilayers. J Comput Chem 28(12):2051-2058.
-
(2007)
J Comput Chem
, vol.28
, Issue.12
, pp. 2051-2058
-
-
Jójárt, B.1
Martinek, T.A.2
-
65
-
-
77955477744
-
Functional rotation of the transporter AcrB: Insights into drug extrusion from simulations
-
Schulz R, Vargiu AV, Collu F, Kleinekathöfer U, Ruggerone P (2010) Functional rotation of the transporter AcrB: Insights into drug extrusion from simulations. PLOS Comput Biol 6(6):e1000806.
-
(2010)
PLOS Comput Biol
, vol.6
, Issue.6
, pp. e1000806
-
-
Schulz, R.1
Vargiu, A.V.2
Collu, F.3
Kleinekathöfer, U.4
Ruggerone, P.5
-
66
-
-
47349116596
-
Activation mechanism of the human histamine H4 receptor-An explicit membrane molecular dynamics simulation study
-
Jójárt B, Kiss R, Viskolcz B, Keseru GM (2008) Activation mechanism of the human histamine H4 receptor-An explicit membrane molecular dynamics simulation study. J Chem Inf Model 48(6):1199-1210.
-
(2008)
J Chem Inf Model
, vol.48
, Issue.6
, pp. 1199-1210
-
-
Jójárt, B.1
Kiss, R.2
Viskolcz, B.3
Keseru, G.M.4
-
67
-
-
84919665724
-
Metadynamics simulations reveal a Na+ independent exiting path of galactose for the inward-facing conformation of vSGLT
-
Bisha I, Rodriguez A, Laio A, Magistrato A (2014) Metadynamics simulations reveal a Na+ independent exiting path of galactose for the inward-facing conformation of vSGLT. PLOS Comput Biol 10(12):e1004017.
-
(2014)
PLOS Comput Biol
, vol.10
, Issue.12
, pp. e1004017
-
-
Bisha, I.1
Rodriguez, A.2
Laio, A.3
Magistrato, A.4
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