-
1
-
-
0038115356
-
The mechanism of calcification and its relation to photosynthesisand respiration in the scleractinian coral Galaxea fascicularis
-
Al-Horani, F., S. M. Al-Moghrabi, and D. de Beer. 2003. The mechanism of calcification and its relation to photosynthesisand respiration in the scleractinian coral Galaxea fascicularis. Mar. Biol. 142: 419-426.
-
(2003)
Mar. Biol
, vol.142
, pp. 419-426
-
-
Al-Horani, F.1
Al-Moghrabi, S.M.2
de Beer, D.3
-
2
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S., and W. Huber. 2010. Differential expression analysis for sequence count data. Genome Biol. 11: R106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
3
-
-
84875185417
-
High adenylyl cyclase activity and in vivo cAMP fluctuations in corals suggest central physiological role
-
Barott, K. L., Y. Helman, L. Haramaty, M. E. Barron, K. C. Hess, J. Buck, L. R. Levin, and M. Tresguerres. 2013. High adenylyl cyclase activity and in vivo cAMP fluctuations in corals suggest central physiological role. Sci. Rep. 3: 1379. doi:10.1038/srep01379.
-
(2013)
Sci. Rep
, vol.3
, pp. 1379
-
-
Barott, K.L.1
Helman, Y.2
Haramaty, L.3
Barron, M.E.4
Hess, K.C.5
Buck, J.6
Levin, L.R.7
Tresguerres, M.8
-
4
-
-
84872855352
-
Genomic basis for coral resilience to climate change
-
Barshis, D., J. T. Ladner, T. Oliver, F. Seneca, N. Traylor-Knowles, and S. Palumbi. 2013. Genomic basis for coral resilience to climate change. Proc. Natl. Acad. Sci. 110: 1387-1392.
-
(2013)
Proc. Natl. Acad. Sci
, vol.110
, pp. 1387-1392
-
-
Barshis, D.1
Ladner, J.T.2
Oliver, T.3
Seneca, F.4
Traylor-Knowles, N.5
Palumbi, S.6
-
5
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y., and Y. Hochberg. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Series B 57: 289-300.
-
(1995)
J. R. Stat. Soc. Series B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
6
-
-
84874526260
-
Carbonic anhydrases in anthozoan corals: A review
-
Bertucci, A., A. Moya, S. Tambutté, D. Allemand, C. T. Supuran, and D. Zoccola. 2013. Carbonic anhydrases in anthozoan corals: a review. Bioorg. Med. Chem. 21: 1437-1450.
-
(2013)
Bioorg. Med. Chem
, vol.21
, pp. 1437-1450
-
-
Bertucci, A.1
Moya, A.2
Tambutté, S.3
Allemand, D.4
Supuran, C.T.5
Zoccola, D.6
-
7
-
-
85039884621
-
Evidence that glucose is the major transferred metabolite in dinoflagellate-cnidarian symbiosis
-
Burriesci, M. S., T. K. Raab, and J. R. Pringle. 2012. Evidence that glucose is the major transferred metabolite in dinoflagellate-cnidarian symbiosis. J. Exp. Biol. 221: 261-269.
-
(2012)
J. Exp. Biol
, vol.221
, pp. 261-269
-
-
Burriesci, M.S.1
Raab, T.K.2
Pringle, J.R.3
-
8
-
-
0141762747
-
Cryptochromes: Enabling plants and animals to determine circadian time
-
Cashmore, A. R. 2003. Cryptochromes: enabling plants and animals to determine circadian time. Cell 114: 537-543.
-
(2003)
Cell
, vol.114
, pp. 537-543
-
-
Cashmore, A.R.1
-
9
-
-
0346728803
-
Functional diversity of Protein Phosphatase-1, a cellular economizer and reset button
-
Ceulemans, H., and M. Bollen. 2004. Functional diversity of Protein Phosphatase-1, a cellular economizer and reset button. Physiol. Rev. 84: 1-39.
-
(2004)
Physiol. Rev
, vol.84
, pp. 1-39
-
-
Ceulemans, H.1
Bollen, M.2
-
10
-
-
79955584998
-
The cryptochromes: Blue light photoreceptors in plants and animals
-
Chaves, I., R. Pokorny, M. Byrdin, N. Hoang, T. Ritz, K. Brettel, L.-O. Essen, G. T. J. van der Horst, A. Batschauer, and M. Ahmad. 2011. The cryptochromes: blue light photoreceptors in plants and animals. Annu. Rev. Plant Biol. 62: 335-364.
-
(2011)
Annu. Rev. Plant Biol
, vol.62
, pp. 335-364
-
-
Chaves, I.1
Pokorny, R.2
Byrdin, M.3
Hoang, N.4
Ritz, T.5
Brettel, K.6
Essen, L.-O.7
van der Horst, G.T.J.8
Batschauer, A.9
Ahmad, M.10
-
11
-
-
7044244165
-
Geochemical perspectives on coral mineralization
-
P. Dove, S. Weiner, and J. deYoreo, eds. The Mineralogical Society of America, Washington, DC
-
Cohen, A. L., and T. A. McConnaughey. 2003. Geochemical perspectives on coral mineralization. Pp. 151-187 in Biomineralization, P. Dove, S. Weiner, and J. deYoreo, eds. The Mineralogical Society of America, Washington, DC.
-
(2003)
Biomineralization
, pp. 151-187
-
-
Cohen, A.L.1
McConnaughey, T.A.2
-
12
-
-
80053139816
-
Circadian cycles are the dominant transcriptional rhythm in the intertidal mussel Mytilus californianus
-
Connor, K., and A. Gracey. 2011. Circadian cycles are the dominant transcriptional rhythm in the intertidal mussel Mytilus californianus. Proc. Natl. Acad. Sci. 108: 16110-16115.
-
(2011)
Proc. Natl. Acad. Sci
, vol.108
, pp. 16110-16115
-
-
Connor, K.1
Gracey, A.2
-
13
-
-
0034817039
-
High temperatures tolerated by a diverse assemblage of shallow-water corals in American Samoa
-
Craig, P., C. Birkeland, and S. Belliveau. 2001. High temperatures tolerated by a diverse assemblage of shallow-water corals in American Samoa. Coral Reefs 20: 185-189.
-
(2001)
Coral Reefs
, vol.20
, pp. 185-189
-
-
Craig, P.1
Birkeland, C.2
Belliveau, S.3
-
14
-
-
0141643358
-
Hypoxia up-regulates prolyl hydroxylase activity: A feedback mechanism that limits HIF-1 reponses during reoxygenation
-
D'Angelo, G., E. Duplan, N. Boyer, P. Vigne, and C. Frelin. 2003. Hypoxia up-regulates prolyl hydroxylase activity: a feedback mechanism that limits HIF-1 reponses during reoxygenation. J. Biol. Chem. 278: 38183-38187.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 38183-38187
-
-
D'Angelo, G.1
Duplan, E.2
Boyer, N.3
Vigne, P.4
Frelin, C.5
-
15
-
-
84867503105
-
The simple fool's guide to population genomics via RNA-Seq: An introduction to high-throughput sequencing data analysis
-
De Wit, P., M. H. Pespeni, J. T. Ladner, D. J. Barshis, F. Seneca, H. Jaris et al. 2012. The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis. Mol. Ecol. Res. 12: 1058-1067. doi:10.1111/1755-0998.12003.
-
(2012)
Mol. Ecol. Res
, vol.12
, pp. 1058-1067
-
-
De Wit, P.1
Pespeni, M.H.2
Ladner, J.T.3
Barshis, D.J.4
Seneca, F.5
Jaris, H.6
-
16
-
-
84886264083
-
Food availability, more than body temperature, drives correlated shifts in ATP-generating and antioxidant enzyme capacities in a population of intertidal mussels (Mytilus californianus)
-
Dowd, W. W., C. A. Felton, H. M. Heymann, L. E. Kost, and G. N. Somero. 2013. Food availability, more than body temperature, drives correlated shifts in ATP-generating and antioxidant enzyme capacities in a population of intertidal mussels (Mytilus californianus). J. Exp. Mar. Biol. Ecol. 449: 171-185.
-
(2013)
J. Exp. Mar. Biol. Ecol
, vol.449
, pp. 171-185
-
-
Dowd, W.W.1
Felton, C.A.2
Heymann, H.M.3
Kost, L.E.4
Somero, G.N.5
-
17
-
-
17944375360
-
C. elegans EGL-9 and mammalian homologs define a family of dioxygenases that regulate HIF by prolyl hydroxylation
-
Epstein, A. C, J. M. Gleadle, L. A. McNeill, K. L. Hewitson, J. O'Rourke, D. R. Mole, M. Mukherji, E. Metzen, M. I. Wilson, A. Dhanda et al. 2001. C. elegans EGL-9 and mammalian homologs define a family of dioxygenases that regulate HIF by prolyl hydroxylation. Cell 107: 43-54.
-
(2001)
Cell
, vol.107
, pp. 43-54
-
-
Epstein, A.C.1
Gleadle, J.M.2
McNeill, L.A.3
Hewitson, K.L.4
O'Rourke, J.5
Mole, D.R.6
Mukherji, M.7
Metzen, E.8
Wilson, M.I.9
Dhanda, A.10
-
18
-
-
0030045791
-
The two PAR leucine zipper proteins, TEF and DBP, display similar circadian and tissue-specific expression, but have different target promoter preferences
-
Fonjallaz, P., V. Ossipow, G. Wanner, and U. Schibler. 1996. The two PAR leucine zipper proteins, TEF and DBP, display similar circadian and tissue-specific expression, but have different target promoter preferences. EMBO J. 15: 351-362.
-
(1996)
EMBO J
, vol.15
, pp. 351-362
-
-
Fonjallaz, P.1
Ossipow, V.2
Wanner, G.3
Schibler, U.4
-
19
-
-
2942695714
-
Coevolution of gene expression among interacting proteins
-
Fraser, H., A. E. Hirsh, D. P. Wall, and M. B. Eisen. 2004. Coevolution of gene expression among interacting proteins. Proc. Natl. Acad. Sci. 101: 9033-9038.
-
(2004)
Proc. Natl. Acad. Sci
, vol.101
, pp. 9033-9038
-
-
Fraser, H.1
Hirsh, A.E.2
Wall, D.P.3
Eisen, M.B.4
-
20
-
-
0037466507
-
Molecular cloning of a cDNA encoding a soluble protein in the coral exoskeleton
-
Fukuda, I., S. Ooki, T. Fujita, E. Murayama, H. Nagasawa, Y. Isa, and T. Watanabe. 2003. Molecular cloning of a cDNA encoding a soluble protein in the coral exoskeleton. Biochem. Biophys. Res. Comm. 304: 11-17.
-
(2003)
Biochem. Biophys. Res. Comm
, vol.304
, pp. 11-17
-
-
Fukuda, I.1
Ooki, S.2
Fujita, T.3
Murayama, E.4
Nagasawa, H.5
Isa, Y.6
Watanabe, T.7
-
21
-
-
0034537947
-
Sources and mechanisms of inorganic carbon transport for coral calcification and photosynthesis
-
Furla, P., I. Galgani, I. Durand, and D. Allemand. 2000. Sources and mechanisms of inorganic carbon transport for coral calcification and photosynthesis. J. Exp. Biol. 203: 3445-3457.
-
(2000)
J. Exp. Biol
, vol.203
, pp. 3445-3457
-
-
Furla, P.1
Galgani, I.2
Durand, I.3
Allemand, D.4
-
22
-
-
0004020619
-
Cytological studies on the gastroderm of Hydra
-
Gauthier, G. F. 1963. Cytological studies on the gastroderm of Hydra. J. Exp. Zool. 152: 13-39.
-
(1963)
J. Exp. Zool
, vol.152
, pp. 13-39
-
-
Gauthier, G.F.1
-
23
-
-
77958560686
-
Thyrotroph embryonic factor regulates lightinduced transcription of repair genes in zebrafish embryonic cells
-
Gavriouchkina, D., S. Fischer, T. Ivacevic, J. Stolte, V. Benes, and M. P. S. Dekens. 2010. Thyrotroph embryonic factor regulates lightinduced transcription of repair genes in zebrafish embryonic cells. PLoS One 5: e12542.
-
(2010)
PLoS One
, vol.5
-
-
Gavriouchkina, D.1
Fischer, S.2
Ivacevic, T.3
Stolte, J.4
Benes, V.5
Dekens, M.P.S.6
-
24
-
-
78049451630
-
Symbiodinium-invertebrate symbioses and the role of metabolomics
-
Gordon, B. R., and W. Leggat. 2010. Symbiodinium-invertebrate symbioses and the role of metabolomics. Mar. Drugs 8: 2546-2568.
-
(2010)
Mar. Drugs
, vol.8
, pp. 2546-2568
-
-
Gordon, B.R.1
Leggat, W.2
-
25
-
-
33646382859
-
Heterotrophic plasticity and resilience in bleached corals
-
Grottoli, A. G., L. J. Rodrigues, and J. E. Palardy. 2006. Heterotrophic plasticity and resilience in bleached corals. Nature 440: 1186- 1189.
-
(2006)
Nature
, vol.440
, pp. 1186-1189
-
-
Grottoli, A.G.1
Rodrigues, L.J.2
Palardy, J.E.3
-
26
-
-
0030963616
-
The hypoxic response: Huffing and HIFing
-
Guillemin, K., and M. A. Krasnow. 1997. The hypoxic response: huffing and HIFing. Cell 89: 9-12.
-
(1997)
Cell
, vol.89
, pp. 9-12
-
-
Guillemin, K.1
Krasnow, M.A.2
-
27
-
-
0034671791
-
Orchestrated transcription of key pathways in Arabidopsis by the circadian clock
-
Harmer, S. L., J. B. Hogenesch, M. Straume, H. S. Chang, B. Han, T. Zhu, X. Wang, J. A. Kreps, and S. A. Kay. 2000. Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290: 2110-2113.
-
(2000)
Science
, vol.290
, pp. 2110-2113
-
-
Harmer, S.L.1
Hogenesch, J.B.2
Straume, M.3
Chang, H.S.4
Han, B.5
Zhu, T.6
Wang, X.7
Kreps, J.A.8
Kay, S.A.9
-
28
-
-
35648973259
-
Circadian control by the reduction/oxidation pathway: Catalase represses light-dependent clock gene expression in the zebrafish
-
Hirayama, J., S. Cho, and P. Sassone-Corsi. 2007. Circadian control by the reduction/oxidation pathway: catalase represses light-dependent clock gene expression in the zebrafish. Proc. Natl. Acad. Sci. 104: 15747-15752.
-
(2007)
Proc. Natl. Acad. Sci
, vol.104
, pp. 15747-15752
-
-
Hirayama, J.1
Cho, S.2
Sassone-Corsi, P.3
-
29
-
-
79955811446
-
Circadian clock gene expression in the coral Favia fragum over diel and lunar reproductive cycles
-
Hoadley, K. D., A. M. Szmant, and S. J. Pyott. 2011. Circadian clock gene expression in the coral Favia fragum over diel and lunar reproductive cycles. PLoS One 6: e19755.
-
(2011)
PLoS One
, vol.6
-
-
Hoadley, K.D.1
Szmant, A.M.2
Pyott, S.J.3
-
31
-
-
83655198289
-
High-frequency dynamics of ocean pH: A multi-ecosystem comparison
-
Hofmann, G. E., J. E. Smith, K. S. Johnson, U. Send, L. A. Levin, F. Micheli, A. Paytan,N. N. Price, B. Peterson, Y. Takeshita et al. 2011. High-frequency dynamics of ocean pH: a multi-ecosystem comparison. PLoS One 6: e28983.
-
(2011)
PLoS One
, vol.6
-
-
Hofmann, G.E.1
Smith, J.E.2
Johnson, K.S.3
Send, U.4
Levin, L.A.5
Micheli, F.6
Paytan, A.7
Price, N.N.8
Peterson, B.9
Takeshita, Y.10
-
32
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang, D. W., B. T. Sherman, and R. A. Lempicki. 2009a. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37: 1-13.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1-13
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
33
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, D. W., B. T. Sherman, and R. A. Lempicki. 2009b. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4: 44-57.
-
(2009)
Nat. Protoc
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
34
-
-
0032493368
-
Regulation of hypoxia-inducible factor 1α is mediated by an O2-dependent degradation domain via the ubiquitin-proteasome pathway
-
Huang, E. L., J. Gu, M. Schau, and F. H. Bunn. 1998. Regulation of hypoxia-inducible factor 1α is mediated by an O2-dependent degradation domain via the ubiquitin-proteasome pathway. Proc. Natl. Acad. Sci. 95: 7987-7992.
-
(1998)
Proc. Natl. Acad. Sci
, vol.95
, pp. 7987-7992
-
-
Huang, E.L.1
Gu, J.2
Schau, M.3
Bunn, F.H.4
-
35
-
-
4444379952
-
Cardiac myocyte-specific HIF-1α deletion alters vascularization, energy availability, calcium flux, and contractility in the normoxic heart
-
Huang, Y., R. P. Hickey, J. L. Yeh, D. Liu, A. Dadak, L. H. Young, R. S. Johnson, and F. J. Giordano. 2004. Cardiac myocyte-specific HIF-1α deletion alters vascularization, energy availability, calcium flux, and contractility in the normoxic heart. FASEB J. 18: 1138-1140. doi: 10.1096/fj.04-1510fje.
-
(2004)
FASEB J
, vol.18
, pp. 1138-1140
-
-
Huang, Y.1
Hickey, R.P.2
Yeh, J.L.3
Liu, D.4
Dadak, A.5
Young, L.H.6
Johnson, R.S.7
Giordano, F.J.8
-
36
-
-
66349107101
-
Harmonics of circadian gene transcription in mammals
-
Hughes, M. E., L. Ditacchio, K. R. Hayes, C. Vollmers, S. Pulivarthy, J. E. Baggs, P. Satchidananda, and J. B. Hogenesch. 2009. Harmonics of circadian gene transcription in mammals. PLoS Genet. 5: 1-12.
-
(2009)
PLoS Genet
, vol.5
, pp. 1-12
-
-
Hughes, M.E.1
Ditacchio, L.2
Hayes, K.R.3
Vollmers, C.4
Pulivarthy, S.5
Baggs, J.E.6
Satchidananda, P.7
Hogenesch, J.B.8
-
37
-
-
15444342958
-
Cellular and developmental control of O2 homeostasis by hypoxia-inducible factor 1α
-
Iyer, N. V., L. E. Kotch, F. Agani, S. W. Leung, E. Laughner, R. H. Wenger, M. Gassmann, J. D. Gearhart, A. M. Lawler, A. Y. Yu, and G. L. Semenza. 1998. Cellular and developmental control of O2 homeostasis by hypoxia-inducible factor 1α. Genes Dev. 12: 149-162.
-
(1998)
Genes Dev
, vol.12
, pp. 149-162
-
-
Iyer, N.V.1
Kotch, L.E.2
Agani, F.3
Leung, S.W.4
Laughner, E.5
Wenger, R.H.6
Gassmann, M.7
Gearhart, J.D.8
Lawler, A.M.9
Yu, A.Y.10
Semenza, G.L.11
-
38
-
-
34248139757
-
The Hes gene family: Repressors and oscillators that orchestrate embryogenesis
-
Kageyama, R., T. Ohtsuka, and T. Kobayashi. 2007. The Hes gene family: repressors and oscillators that orchestrate embryogenesis. Development 134: 1243-1251.
-
(2007)
Development
, vol.134
, pp. 1243-1251
-
-
Kageyama, R.1
Ohtsuka, T.2
Kobayashi, T.3
-
39
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa, M., and S. Goto. 2000. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28: 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
40
-
-
84891760956
-
Data, information, knowledge and principle: Back to metabolism in KEGG
-
Kanehisa, M., S. Goto, Y. Sato, M. Kawashima, M. Furumichi, and M. Tanabe. 2013. Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 42: D199-D205.
-
(2013)
Nucleic Acids Res
, vol.42
, pp. D199-D205
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Kawashima, M.4
Furumichi, M.5
Tanabe, M.6
-
41
-
-
62849093963
-
Phototropic growth in a reef flat acroporid branching coral species
-
Kaniewska, P., P. R. Campbell, M. Fine, and O. Hoegh-Guldberg. 2009. Phototropic growth in a reef flat acroporid branching coral species. J. Exp. Biol. 212: 662-667.
-
(2009)
J. Exp. Biol
, vol.212
, pp. 662-667
-
-
Kaniewska, P.1
Campbell, P.R.2
Fine, M.3
Hoegh-Guldberg, O.4
-
42
-
-
77957592239
-
Coordination of the maize transcriptome by a conserved circadian clock
-
Khan, S., S. C. Rowe, and F. G. Harmon. 2010. Coordination of the maize transcriptome by a conserved circadian clock. BMC Plant Biol. 10: 126.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 126
-
-
Khan, S.1
Rowe, S.C.2
Harmon, F.G.3
-
43
-
-
84938748291
-
High-resolution physical and biogeochemical variability from a shallow back reef on Ofu, American Samoa:An end-member perspective
-
Koweek, D. A., R. B. Dunbar, S. G. Monismith, D. A. Mucciarone, C. B. Woodson, and L. Samuel. 2015. High-resolution physical and biogeochemical variability from a shallow back reef on Ofu, American Samoa:an end-member perspective. Coral Reefs doi:10.1007/s00338- 015-1308-9.
-
(2015)
Coral Reefs
-
-
Koweek, D.A.1
Dunbar, R.B.2
Monismith, S.G.3
Mucciarone, D.A.4
Woodson, C.B.5
Samuel, L.6
-
44
-
-
84894556272
-
Extensive differences in gene expression between symbiotic and aposymbiotic cnidarians
-
Lehnert, E. M., M. E. Mouchka, M. S. Burriesci, N. D. Gallo, J. A. Schwarz, and J. R. Pringle. 2014. Extensive differences in gene expression between symbiotic and aposymbiotic cnidarians. Genes Genomes Genetics 4: 277-295.
-
(2014)
Genes Genomes Genetics
, vol.4
, pp. 277-295
-
-
Lehnert, E.M.1
Mouchka, M.E.2
Burriesci, M.S.3
Gallo, N.D.4
Schwarz, J.A.5
Pringle, J.R.6
-
45
-
-
70450223507
-
Generating specificity and diversity in the transcriptional response to hypoxia
-
Lendahl, U., K. L. Lee, H. Yang, and L. Poellinger. 2009. Generating specificity and diversity in the transcriptional response to hypoxia. Nat. Rev. Genet. 10: 821-832.
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 821-832
-
-
Lendahl, U.1
Lee, K.L.2
Yang, H.3
Poellinger, L.4
-
46
-
-
32444449726
-
Diel 'tuning' of coral metabolism: Physiological responses to light cues
-
Levy, O. 2006. Diel 'tuning' of coral metabolism: physiological responses to light cues. J. Exp. Biol. 209: 273-283.
-
(2006)
J. Exp. Biol
, vol.209
, pp. 273-283
-
-
Levy, O.1
-
47
-
-
35348988675
-
Light-responsive cryptochromes from a simple multicellular animal, the coral Acropora millepora
-
Levy, O., L. Appelbaum, W. Leggat, Y. Gothlif, D. C. Hayward, D. J. Miller, and O. Hoegh-Guldberg. 2007. Light-responsive cryptochromes from a simple multicellular animal, the coral Acropora millepora. Science 318: 467-470.
-
(2007)
Science
, vol.318
, pp. 467-470
-
-
Levy, O.1
Appelbaum, L.2
Leggat, W.3
Gothlif, Y.4
Hayward, D.C.5
Miller, D.J.6
Hoegh-Guldberg, O.7
-
48
-
-
78651446504
-
Complex diel cycles of gene expression in coral-algal symbiosis
-
Levy, O., P. Kaniewska, S. Alon, E. Eisenberg, S. Karako-Lampert, L. K. Bay, R. Reef, M. Rodriguez-Lanetty, D. J. Miller, and O. Hoegh-Guldberg. 2011. Complex diel cycles of gene expression in coral-algal symbiosis. Science 331: 175.
-
(2011)
Science
, vol.331
, pp. 175
-
-
Levy, O.1
Kaniewska, P.2
Alon, S.3
Eisenberg, E.4
Karako-Lampert, S.5
Bay, L.K.6
Reef, R.7
Rodriguez-Lanetty, M.8
Miller, D.J.9
Hoegh-Guldberg, O.10
-
49
-
-
84880199410
-
Pathview: An R/Bioconductor package for pathway-based data integration and visualization
-
Luo, W., and C. Brouwer. 2013. Pathview: an R/Bioconductor package for pathway-based data integration and visualization. Bioinformatics 29: 1830-1831.
-
(2013)
Bioinformatics
, vol.29
, pp. 1830-1831
-
-
Luo, W.1
Brouwer, C.2
-
50
-
-
34548853967
-
Identification of the circadian transcriptome in adult mouse skeletal muscle
-
McCarthy, J. J., J. L. Andrews, E. L. McDearmon, K. S. Campbell, B. K. Barber, B. H. Miller, J. R. Walker, J. B. Hogenesch, J. S. Takahashi, and K. A. Esser. 2007. Identification of the circadian transcriptome in adult mouse skeletal muscle. Physiol. Genomics 31: 86-95.
-
(2007)
Physiol. Genomics
, vol.31
, pp. 86-95
-
-
McCarthy, J.J.1
Andrews, J.L.2
McDearmon, E.L.3
Campbell, K.S.4
Barber, B.K.5
Miller, B.H.6
Walker, J.R.7
Hogenesch, J.B.8
Takahashi, J.S.9
Esser, K.A.10
-
51
-
-
80052099023
-
Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure
-
Meyer, E., G. V. Aglyamova, and M. V. Matz. 2011. Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure. Mol. Ecol. 20: 3599-3616.
-
(2011)
Mol. Ecol
, vol.20
, pp. 3599-3616
-
-
Meyer, E.1
Aglyamova, G.V.2
Matz, M.V.3
-
52
-
-
40149105297
-
Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules
-
Michael, T. P., T. C. Mockler, G. Breton, C. McEntee, A. Byer, J. D. Trout, S. P. Hazen, R. Shen, H. D. Priest, C. M. Sullivan et al. 2008. Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. PLoS Genet. 4: 1-17.
-
(2008)
PLoS Genet
, vol.4
, pp. 1-17
-
-
Michael, T.P.1
Mockler, T.C.2
Breton, G.3
McEntee, C.4
Byer, A.5
Trout, J.D.6
Hazen, S.P.7
Shen, R.8
Priest, H.D.9
Sullivan, C.M.10
-
53
-
-
33847632469
-
Circadian and CLOCK-controlled regulation of the mouse transcriptome and cell proliferation
-
Miller, B. H., E. L. McDearmon, S. Panda, K. R. Hayes, J. Zhang, J. L. Andrews, M. P. Antoch, J. R. Walker, K. A. Esser, J. B. Hogenesch, and J. S. Takahashi. 2007. Circadian and CLOCK-controlled regulation of the mouse transcriptome and cell proliferation. Proc. Natl. Acad. Sci. 104: 3342-3347.
-
(2007)
Proc. Natl. Acad. Sci
, vol.104
, pp. 3342-3347
-
-
Miller, B.H.1
McDearmon, E.L.2
Panda, S.3
Hayes, K.R.4
Zhang, J.5
Andrews, J.L.6
Antoch, M.P.7
Walker, J.R.8
Esser, K.A.9
Hogenesch, J.B.10
Takahashi, J.S.11
-
54
-
-
33749583396
-
Study of calcification during a daily cycle of the coral Stylophora pistillata: Implications for 'light enhanced calcification
-
Moya, A., E. Tambutté, D. Zoccola, N. Caminiti, and D. Allemand. 2006. Study of calcification during a daily cycle of the coral Stylophora pistillata: implications for 'light enhanced calcification.' J. Exp. Biol. 209: 3413-3419.
-
(2006)
' J. Exp. Biol
, vol.209
, pp. 3413-3419
-
-
Moya, A.1
Tambutté, E.2
Zoccola, D.3
Caminiti, N.4
Allemand, D.5
-
55
-
-
55949108142
-
Cloning and use of a coral 36B4 gene to study the differential expression of coral genes between light and dark conditions
-
Moya, A., S. Tambutté, G. E. Béranger, B. Gaume, J.-C. Scimeca, D. Allemand, and D. Zoccola. 2008a. Cloning and use of a coral 36B4 gene to study the differential expression of coral genes between light and dark conditions. Mar. Biotechnol. 10: 653-663.
-
(2008)
Mar. Biotechnol
, vol.10
, pp. 653-663
-
-
Moya, A.1
Tambutté, S.2
Béranger, G.E.3
Gaume, B.4
Scimeca, J.-C.5
Allemand, D.6
Zoccola, D.7
-
56
-
-
54449084714
-
Carbonic anhydrase in the scleractinian coral Stylophora pistillata: Characterization, location, and role in biomineralization
-
Moya, A., S. Tambutté, A. Bertucci, E. Tambutté, S. Lotto, D. Vullo, C. T. Supuran, D. Allemand, and D. Zoccola. 2008b. Carbonic anhydrase in the scleractinian coral Stylophora pistillata: characterization, location, and role in biomineralization. J. Biol. Chem. 283: 25475-25484.
-
(2008)
J. Biol. Chem
, vol.283
, pp. 25475-25484
-
-
Moya, A.1
Tambutté, S.2
Bertucci, A.3
Tambutté, E.4
Lotto, S.5
Vullo, D.6
Supuran, C.T.7
Allemand, D.8
Zoccola, D.9
-
57
-
-
0034671686
-
Notch signaling: From the outside in
-
Mumm, J. S., and R. Kopan. 2000. Notch signaling: from the outside in. Dev. Biol. 228: 151-165.
-
(2000)
Dev. Biol
, vol.228
, pp. 151-165
-
-
Mumm, J.S.1
Kopan, R.2
-
58
-
-
0001462989
-
Assimilation of photosynthetic products of zooxanthellae by a reef coral
-
Muscatine, L., and E. Cernichiari. 1969. Assimilation of photosynthetic products of zooxanthellae by a reef coral. Biol. Bull. 137: 506-523.
-
(1969)
Biol. Bull
, vol.137
, pp. 506-523
-
-
Muscatine, L.1
Cernichiari, E.2
-
59
-
-
0034610274
-
Members of the HRT family of basic helix-loop-helix proteins act as transcriptional repressors downstream of Notch signaling
-
Nakagawa, O., D. G. McFadden, M. Nakagawa, H. Yanagisawa, T. Hu, D. Srivastava, and E. N. Olson. 2000. Members of the HRT family of basic helix-loop-helix proteins act as transcriptional repressors downstream of Notch signaling. Proc. Natl. Acad. Sci. 97:13655- 13660.
-
(2000)
Proc. Natl. Acad. Sci
, vol.97
, pp. 13655-13660
-
-
Nakagawa, O.1
McFadden, D.G.2
Nakagawa, M.3
Yanagisawa, H.4
Hu, T.5
Srivastava, D.6
Olson, E.N.7
-
60
-
-
79955888491
-
Do fluctuating temperature environments elevate coral thermal tolerance?
-
Oliver, T. A., and S. R. Palumbi. 2011. Do fluctuating temperature environments elevate coral thermal tolerance? Coral Reefs 30: 429- 440.
-
(2011)
Coral Reefs
, vol.30
, pp. 429-440
-
-
Oliver, T.A.1
Palumbi, S.R.2
-
61
-
-
0037118077
-
Circadian rhythms from flies to human
-
Panda, S., J. B. Hogenesch, and S. A. Kay. 2002. Circadian rhythms from flies to human. Nature 417: 329-335.
-
(2002)
Nature
, vol.417
, pp. 329-335
-
-
Panda, S.1
Hogenesch, J.B.2
Kay, S.A.3
-
62
-
-
84883230158
-
The skeletal proteome of the coral Acropora millepora: The evolution of calcification by co-option and domain shuffling
-
Ramos-Silva, P., J. Kaandorp, L. Huisman, B. Marie, I. Zanella-Cleon, N. Guichard, D. J. Miller, and F. Marin. 2013. The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling. Mol. Biol. Evol. 30: 2099-2112.
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 2099-2112
-
-
Ramos-Silva, P.1
Kaandorp, J.2
Huisman, L.3
Marie, B.4
Zanella-Cleon, I.5
Guichard, N.6
Miller, D.J.7
Marin, F.8
-
63
-
-
33645778794
-
Temperature regulates hypoxia-inducible factor-1 (HIF-1) in a poikilothermic vertebrate, crucian carp (Carassius carassius)
-
Rissanen, E., H. K. Tanberg, J. Sollid, G. E. Nilsson, and M. Nikinmaa. 2006. Temperature regulates hypoxia-inducible factor-1 (HIF-1) in a poikilothermic vertebrate, crucian carp (Carassius carassius). J. Exp. Biol. 209: 994-1003.
-
(2006)
J. Exp. Biol
, vol.209
, pp. 994-1003
-
-
Rissanen, E.1
Tanberg, H.K.2
Sollid, J.3
Nilsson, G.E.4
Nikinmaa, M.5
-
64
-
-
0030961006
-
Hypoxia-inducible factor 1α (HIF-1α) protein is rapidly degraded by the ubiquitin-proteasome system under normoxic conditions
-
Salceda, S., and J. Caro. 1997. Hypoxia-inducible factor 1α (HIF-1α) protein is rapidly degraded by the ubiquitin-proteasome system under normoxic conditions. J. Biol. Chem. 272: 22642-22647.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 22642-22647
-
-
Salceda, S.1
Caro, J.2
-
65
-
-
0035108613
-
Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis
-
Schaffer, R., J. Landgraf, M. Accerbi, V. Simon, M. Larson, and E. Wisman. 2001. Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis. Plant Cell 13: 113-123.
-
(2001)
Plant Cell
, vol.13
, pp. 113-123
-
-
Schaffer, R.1
Landgraf, J.2
Accerbi, M.3
Simon, V.4
Larson, M.5
Wisman, E.6
-
66
-
-
0033233243
-
Regulation of mammalian O2 homeostasis by hypoxia-inducible factor 1
-
Semenza, G. L. 1999. Regulation of mammalian O2 homeostasis by hypoxia-inducible factor 1. Annu. Rev. Cell Dev. Biol. 15: 551-578.
-
(1999)
Annu. Rev. Cell Dev. Biol
, vol.15
, pp. 551-578
-
-
Semenza, G.L.1
-
68
-
-
84925425962
-
The role of transcriptome resilience in resistance of corals to bleaching
-
Seneca, F. O., and S. R. Palumbi. 2015. The role of transcriptome resilience in resistance of corals to bleaching. Mol. Ecol. 24: 1467- 1484.
-
(2015)
Mol. Ecol
, vol.24
, pp. 1467-1484
-
-
Seneca, F.O.1
Palumbi, S.R.2
-
69
-
-
0027145369
-
Extreme diel fluctuations of oxygen in diffusive boundary layers surrounding stony corals
-
Shashar, N., Y. Cohen, and Y. Loya. 1993. Extreme diel fluctuations of oxygen in diffusive boundary layers surrounding stony corals. Biol. Bull. 185: 455-461.
-
(1993)
Biol. Bull
, vol.185
, pp. 455-461
-
-
Shashar, N.1
Cohen, Y.2
Loya, Y.3
-
70
-
-
0022169403
-
Oxygen detoxification in algalinvertebrate symbioses from the Great Barrier Reef
-
Shick, J. M., and J. A. Dykens. 1985. Oxygen detoxification in algalinvertebrate symbioses from the Great Barrier Reef. Oecologia 66: 33-41.
-
(1985)
Oecologia
, vol.66
, pp. 33-41
-
-
Shick, J.M.1
Dykens, J.A.2
-
71
-
-
80051936630
-
Using the Acropora digitifera genome to understand coral responses to environmental change
-
Shinzato, C., E. Shoguchi, T. Kawashima, M. Hamada, K. Hisata, M. Tanaka, M. Fujie, M. Fujiwara, R. Koyanagi, T. Ikuta et al. 2011. Using the Acropora digitifera genome to understand coral responses to environmental change. Nature 476: 320-323.
-
(2011)
Nature
, vol.476
, pp. 320-323
-
-
Shinzato, C.1
Shoguchi, E.2
Kawashima, T.3
Hamada, M.4
Hisata, K.5
Tanaka, M.6
Fujie, M.7
Fujiwara, M.8
Koyanagi, R.9
Ikuta, T.10
-
72
-
-
84883055915
-
Coupled changes in oxygen concentration and pH caused by metabolism of benthic coral reef organisms
-
Smith, J. E., N. N. Price, C. E. Nelson, and A. F. Haas. 2013. Coupled changes in oxygen concentration and pH caused by metabolism of benthic coral reef organisms. Mar. Biol. 160: 2437-2447.
-
(2013)
Mar. Biol
, vol.160
, pp. 2437-2447
-
-
Smith, J.E.1
Price, N.N.2
Nelson, C.E.3
Haas, A.F.4
-
73
-
-
77953952168
-
Flexible phase adjustment of circadian albumin D site-binding protein (Dbp) gene expression by CRYPTOCHROME1
-
Strathmann, M., F. Stadler, F. Tamanini, G. T. J. van der Horst, and J. A. Ripperger. 2010. Flexible phase adjustment of circadian albumin D site-binding protein (Dbp) gene expression by CRYPTOCHROME1. Gene. Dev. 24: 1317-1328.
-
(2010)
Gene. Dev
, vol.24
, pp. 1317-1328
-
-
Strathmann, M.1
Stadler, F.2
Tamanini, F.3
van der Horst, G.T.J.4
Ripperger, J.A.5
-
74
-
-
0020690860
-
Ultrastructure and cytochemistry of glycogen-containing vacuoles in gastrodermal cells in developing hydranths of a hydromedusan coelenterate
-
Taatjes, D. J., and E. R. Rivera. 1983. Ultrastructure and cytochemistry of glycogen-containing vacuoles in gastrodermal cells in developing hydranths of a hydromedusan coelenterate. Tissue Cell 15: 537-545.
-
(1983)
Tissue Cell
, vol.15
, pp. 537-545
-
-
Taatjes, D.J.1
Rivera, E.R.2
-
75
-
-
84872038509
-
Systematic identification of rhythmic genes reveals camk1gb as a new element in the circadian clockwork
-
Tovin, A., S. Alon, Z. Ben-Moshe, P. Mracek, G. Vatine, N. S. Foulkes, J. Jacob-Hirsch, G. Rechavi, R. Toyama, S. L. Coon, et al. 2012. Systematic identification of rhythmic genes reveals camk1gb as a new element in the circadian clockwork. PloS Genet. 8: e1003116.
-
(2012)
PloS Genet
, vol.8
-
-
Tovin, A.1
Alon, S.2
Ben-Moshe, Z.3
Mracek, P.4
Vatine, G.5
Foulkes, N.S.6
Jacob-Hirsch, J.7
Rechavi, G.8
Toyama, R.9
Coon, S.L.10
-
76
-
-
77958504804
-
Clocks not winding down: Unravelling circadian networks
-
Zhang, E. E., and S. A. Kay. 2010. Clocks not winding down: unravelling circadian networks. Nat. Rev. Mol. Cell Biol. 11: 764-776.
-
(2010)
Nat. Rev. Mol. Cell Biol
, vol.11
, pp. 764-776
-
-
Zhang, E.E.1
Kay, S.A.2
|