메뉴 건너뛰기




Volumn 607, Issue , 2007, Pages 20-37

The diversity of eukaryotes and the root of the eukaryotic tree

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA;

EID: 84934434305     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-0-387-74021-8_2     Document Type: Review
Times cited : (36)

References (153)
  • 1
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87(12):4576-4579.
    • (1990) Proc Natl Acad Sci USA , vol.87 , Issue.12 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 2
    • 0012210873 scopus 로고
    • Evolutionary diversity of eukaryotic small-subunit rRNA genes
    • Sogin ML, Elwood HJ, Gunderson JH. Evolutionary diversity of eukaryotic small-subunit rRNA genes. Proc Natl Acad Sci USA 1986; 83(5):1383-1387.
    • (1986) Proc Natl Acad Sci USA , vol.83 , Issue.5 , pp. 1383-1387
    • Sogin, M.L.1    Elwood, H.J.2    Gunderson, J.H.3
  • 3
    • 0026613365 scopus 로고
    • The early evolution of eukaryotes: A geological perspective
    • Knoll AH. The early evolution of eukaryotes: A geological perspective. Science 1992; 256(5057):622-627.
    • (1992) Science , vol.256 , Issue.5057 , pp. 622-627
    • Knoll, A.H.1
  • 4
    • 0026282909 scopus 로고
    • Early evolution and the origin of eukaryotes
    • Sogin ML. Early evolution and the origin of eukaryotes. Curr Opin Genet Dev 1991; 1(4):457-463.
    • (1991) Curr Opin Genet Dev , vol.1 , Issue.4 , pp. 457-463
    • Sogin, M.L.1
  • 5
    • 0024967146 scopus 로고
    • Molecular phylogeny. Archaebacteria and Archezoa
    • Cavalier-Smith T. Molecular phylogeny. Archaebacteria and Archezoa. Nature 1989; 339(6220):100-01.
    • (1989) Nature , vol.339 , Issue.6220 , pp. 100-101
    • Cavalier-Smith, T.1
  • 6
    • 0346457225 scopus 로고    scopus 로고
    • Dating the rise of atmospheric oxygen
    • Bekker A, Holland HD, Wang PL et al. Dating the rise of atmospheric oxygen. Nature 2004; 427(6970): 117-120.
    • (2004) Nature , vol.427 , Issue.6970 , pp. 117-120
    • Bekker, A.1    Holland, H.D.2    Wang, P.L.3
  • 7
    • 0001204463 scopus 로고
    • Natur und Ursprung der Cromatophoren im Pflanzenreiche
    • Mereschkowski C. Ueber Natur und Ursprung der Cromatophoren im Pflanzenreiche. Biologisches Centralblatt 1905; 25:593-604.
    • (1905) Biologisches Centralblatt , vol.25 , pp. 593-604
    • Ueber, M.C.1
  • 9
    • 0020653446 scopus 로고
    • The complete nucleotide sequence of a 16S ribosomal RNA gene from a blue-green alga, Anacystis nidulans
    • Tomioka N, Sugiura M. The complete nucleotide sequence of a 16S ribosomal RNA gene from a blue-green alga, Anacystis nidulans. Mol Gen Genet 1983; 191(1):46-50.
    • (1983) Mol Gen Genet , vol.191 , Issue.1 , pp. 46-50
    • Tomioka, N.1    Sugiura, M.2
  • 11
    • 0001271789 scopus 로고
    • Phylogenetic structure of the prokaryotic domain: The primary kingdoms
    • Woese CR, Fox GE. Phylogenetic structure of the prokaryotic domain: The primary kingdoms. Proc Natl Acad Sci USA 1977; 74(11):5088-5090.
    • (1977) Proc Natl Acad Sci USA , vol.74 , Issue.11 , pp. 5088-5090
    • Woese, C.R.1    Fox, G.E.2
  • 12
    • 0024358140 scopus 로고    scopus 로고
    • Iwabe N, Kuma K, Hasegawa Met al. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc Natl Acad Sci USA 1989; 86(23):9355-9359.
    • Iwabe N, Kuma K, Hasegawa Met al. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc Natl Acad Sci USA 1989; 86(23):9355-9359.
  • 13
    • 0024722874 scopus 로고
    • Evolution of the vacuolar H+-ATPase: Implications for the origin of eukaryotes
    • Gogarten JP, Kibak H, Dittrich P et al. Evolution of the vacuolar H+-ATPase: Implications for the origin of eukaryotes. Proc Natl Acad Sci USA 1989; 86(17):6661-6665.
    • (1989) Proc Natl Acad Sci USA , vol.86 , Issue.17 , pp. 6661-6665
    • Gogarten, J.P.1    Kibak, H.2    Dittrich, P.3
  • 14
    • 0029819318 scopus 로고    scopus 로고
    • The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny
    • Baldauf SL, Palmer JD, Doolittle WF. The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. Proc Natl Acad Sci USA 1996; 93(15):7749-7754.
    • (1996) Proc Natl Acad Sci USA , vol.93 , Issue.15 , pp. 7749-7754
    • Baldauf, S.L.1    Palmer, J.D.2    Doolittle, W.F.3
  • 15
    • 0028941917 scopus 로고
    • Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications
    • Brown JR, Doolittle WF. Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications. Proc Natl Acad Sci USA 1995; 92(7):2441-2445.
    • (1995) Proc Natl Acad Sci USA , vol.92 , Issue.7 , pp. 2441-2445
    • Brown, J.R.1    Doolittle, W.F.2
  • 16
    • 0029815789 scopus 로고    scopus 로고
    • Phylogenetic analysis of carbamoylphosphate synthetase genes: Complex evolutionary history includes an internal duplication within a gene which can root the tree of life
    • Lawson FS, Charlebois RL, Dillon JA. Phylogenetic analysis of carbamoylphosphate synthetase genes: Complex evolutionary history includes an internal duplication within a gene which can root the tree of life. Mol Biol Evol 1996; 13(7):970-977.
    • (1996) Mol Biol Evol , vol.13 , Issue.7 , pp. 970-977
    • Lawson, F.S.1    Charlebois, R.L.2    Dillon, J.A.3
  • 17
    • 0031735878 scopus 로고    scopus 로고
    • The root of the universal tree of life inferred from anciently duplicated genes encoding components of the protein-targeting machinery
    • Gribaldo S, Cammarano P. The root of the universal tree of life inferred from anciently duplicated genes encoding components of the protein-targeting machinery. J Mol Evol 1998; 47(5):508-516.
    • (1998) J Mol Evol , vol.47 , Issue.5 , pp. 508-516
    • Gribaldo, S.1    Cammarano, P.2
  • 18
    • 0030612596 scopus 로고    scopus 로고
    • Evolutionary analysis of the hisCGABdFDEHI gene cluster from the archaeon Sulfolobus solfataricus P2
    • Charlebois RL, Sensen CW, Doolittle WF et al. Evolutionary analysis of the hisCGABdFDEHI gene cluster from the archaeon Sulfolobus solfataricus P2. J Bacteriol 1997; 179(13):4429-4432.
    • (1997) J Bacteriol , vol.179 , Issue.13 , pp. 4429-4432
    • Charlebois, R.L.1    Sensen, C.W.2    Doolittle, W.F.3
  • 19
    • 0028674882 scopus 로고
    • Phylogenetic analysis of 70 kD heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus
    • Gupta RS, Singh B. Phylogenetic analysis of 70 kD heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus. Curr Biol 1994; 4(12):1104-1114.
    • (1994) Curr Biol , vol.4 , Issue.12 , pp. 1104-1114
    • Gupta, R.S.1    Singh, B.2
  • 20
    • 0023087090 scopus 로고
    • Eukaryotic traits in Archaebacteria. Could the eukaryotic cytoplasm have arisen from archaebacterial origin?
    • Zillig W. Eukaryotic traits in Archaebacteria. Could the eukaryotic cytoplasm have arisen from archaebacterial origin? Ann NY Acad Sci 1987; 503:78-82.
    • (1987) Ann NY Acad Sci , vol.503 , pp. 78-82
    • Zillig, W.1
  • 21
    • 2642689666 scopus 로고    scopus 로고
    • The hydrogen hypothesis for the first eukaryote
    • Martin W, Miiller M. The hydrogen hypothesis for the first eukaryote. Nature 1998; 392(6671):37-41.
    • (1998) Nature , vol.392 , Issue.6671 , pp. 37-41
    • Martin, W.1    Miiller, M.2
  • 22
    • 0031735879 scopus 로고    scopus 로고
    • Symbiosis between methanogenic archaea and delta-Proteobacteria as the origin of eukaryotes: The syntrophic hypothesis
    • Moreira D, IApez-Garcfa P. Symbiosis between methanogenic archaea and delta-Proteobacteria as the origin of eukaryotes: The syntrophic hypothesis. J Mol Evol 1998; 47(5):517-530.
    • (1998) J Mol Evol , vol.47 , Issue.5 , pp. 517-530
    • Moreira, D.1    IApez-Garcfa, P.2
  • 23
    • 0023498406 scopus 로고
    • Earliest phylogenetic branching: Comparing rRNA-based evolutionary trees inferred with various techniques
    • Olsen G. Earliest phylogenetic branching: Comparing rRNA-based evolutionary trees inferred with various techniques. Cold Spring Harb symp Quant Biol 1987; LII:825-837.
    • (1987) Cold Spring Harb symp Quant Biol , vol.52 , pp. 825-837
    • Olsen, G.1
  • 24
    • 0000084234 scopus 로고
    • A framework for the quantitative study of evolutionary trees
    • Hendy MD, Penny D. A framework for the quantitative study of evolutionary trees. Syst Zool 1989; 38:297-309.
    • (1989) Syst Zool , vol.38 , pp. 297-309
    • Hendy, M.D.1    Penny, D.2
  • 25
    • 0027662420 scopus 로고
    • Species sampling has a major impact on phylogenetic inference
    • Lecointre G, Philippe H, Le HLV et al. Species sampling has a major impact on phylogenetic inference. Mol Phylogenet Evol 1993; 2(3):205-224.
    • (1993) Mol Phylogenet Evol , vol.2 , Issue.3 , pp. 205-224
    • Lecointre, G.1    Philippe, H.2    Le, H.L.V.3
  • 26
    • 0025952777 scopus 로고
    • Archaeal phylogeny: Reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts
    • Woese CR, Achenbach L, Rouviere P et al. Archaeal phylogeny: Reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts. Syst Appl Microbiol 1991; 14(4):364-371.
    • (1991) Syst Appl Microbiol , vol.14 , Issue.4 , pp. 364-371
    • Woese, C.R.1    Achenbach, L.2    Rouviere, P.3
  • 27
    • 0027265023 scopus 로고
    • Reduced thermophilic bias in the 16S rDNA sequence from Thermus ruber provides further support for a relationship between Thermus and Deinococcus
    • Embley TM, Thomas RH, Williams RAD. Reduced thermophilic bias in the 16S rDNA sequence from Thermus ruber provides further support for a relationship between Thermus and Deinococcus. Syst Appl Microbiol 1992; 16:25-29.
    • (1992) Syst Appl Microbiol , vol.16 , pp. 25-29
    • Embley, T.M.1    Thomas, R.H.2    Williams, R.A.D.3
  • 28
    • 0030900384 scopus 로고    scopus 로고
    • Relationships between genomic G + C content, RNA secondary structures, and optimal growth temperature in prokaryotes
    • Galtier N, Lobry JR. Relationships between genomic G + C content, RNA secondary structures, and optimal growth temperature in prokaryotes. J Mol Evol 1997; 44(6):632-636.
    • (1997) J Mol Evol , vol.44 , Issue.6 , pp. 632-636
    • Galtier, N.1    Lobry, J.R.2
  • 29
    • 84959798530 scopus 로고    scopus 로고
    • Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 1978; 27:401-410.
    • Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 1978; 27:401-410.
  • 30
    • 17744394753 scopus 로고    scopus 로고
    • Phylogenomics and the reconstruction of the tree of life
    • Delsuc F, Brinkmann H, Philippe H. Phylogenomics and the reconstruction of the tree of life. Nat Rev Genet 2005; 6(5):361-375.
    • (2005) Nat Rev Genet , vol.6 , Issue.5 , pp. 361-375
    • Delsuc, F.1    Brinkmann, H.2    Philippe, H.3
  • 31
    • 0031737821 scopus 로고    scopus 로고
    • How good are deep phylogenetic trees?
    • Philippe H, Laurent J. How good are deep phylogenetic trees? Curr Opin Genet Dev 1998; 8(6):616-623.
    • (1998) Curr Opin Genet Dev , vol.8 , Issue.6 , pp. 616-623
    • Philippe, H.1    Laurent, J.2
  • 32
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J. Evolutionary trees from DNA sequences: A maximum likelihood approach. J Mol Evol 1981; 17(6):368-376.
    • (1981) J Mol Evol , vol.17 , Issue.6 , pp. 368-376
    • Felsenstein, J.1
  • 33
    • 0031084114 scopus 로고    scopus 로고
    • Is the Felsenstein zone a fly trap?
    • Huelsenbeck JP. Is the Felsenstein zone a fly trap? Syst Biol 1997; 46(1):69-74.
    • (1997) Syst Biol , vol.46 , Issue.1 , pp. 69-74
    • Huelsenbeck, J.P.1
  • 34
    • 27744524191 scopus 로고    scopus 로고
    • An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
    • Brinkmann H, Giezen M, Zhou Y et al. An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. Syst Biol 2005; 54(5):743-757.
    • (2005) Syst Biol , vol.54 , Issue.5 , pp. 743-757
    • Brinkmann, H.1    Giezen, M.2    Zhou, Y.3
  • 35
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro HN, ed, New York: Academic Press
    • Jukes TH, Cantor CR. Evolution of protein molecules. In: Munro HN, ed. Mammalian Protein Metabolism. New York: Academic Press, 1969:21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 36
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave C, Preparata G, Saccone C et al. A new method for calculating evolutionary substitution rates. J Mol Evol 1984; 20(1):86-93.
    • (1984) J Mol Evol , vol.20 , Issue.1 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3
  • 37
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan S, Goldman N. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 2001; 18(5):691-699.
    • (2001) Mol Biol Evol , vol.18 , Issue.5 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 38
    • 0027132974 scopus 로고
    • Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • Yang Z. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol Biol Evol 1993; 10(6):1396-1401.
    • (1993) Mol Biol Evol , vol.10 , Issue.6 , pp. 1396-1401
    • Yang, Z.1
  • 39
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • Lartillot N, Philippe H. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol Biol Evol 2004; 21(6): 1095-1109.
    • (2004) Mol Biol Evol , vol.21 , Issue.6 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 40
    • 4243140058 scopus 로고    scopus 로고
    • A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data
    • Pagel M, Meade A. A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. Syst Biol 2004; 53(4):571-581.
    • (2004) Syst Biol , vol.53 , Issue.4 , pp. 571-581
    • Pagel, M.1    Meade, A.2
  • 41
    • 0031829758 scopus 로고    scopus 로고
    • Inferring pattern and process: Maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis
    • Galtier N, Gouy M. Inferring pattern and process: Maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis. Mol Biol Evol 1998; 15(7):871-879.
    • (1998) Mol Biol Evol , vol.15 , Issue.7 , pp. 871-879
    • Galtier, N.1    Gouy, M.2
  • 42
    • 0028961933 scopus 로고
    • On the use of nucleic acid sequences to infer early branchings in the tree of life
    • Yang Z, Roberts D. On the use of nucleic acid sequences to infer early branchings in the tree of life. Mol Biol Evol 1995; 12(3):451-458.
    • (1995) Mol Biol Evol , vol.12 , Issue.3 , pp. 451-458
    • Yang, Z.1    Roberts, D.2
  • 43
    • 3242701529 scopus 로고    scopus 로고
    • Modeling compositional heterogeneity
    • Foster PG. Modeling compositional heterogeneity. Syst Biol 2004; 53(3):485-495.
    • (2004) Syst Biol , vol.53 , Issue.3 , pp. 485-495
    • Foster, P.G.1
  • 45
    • 0003991673 scopus 로고    scopus 로고
    • Sunderland, MA, USA: Sinauer Associates Inc
    • Felsenstein J. Inferring phylogenies. Sunderland, MA, USA: Sinauer Associates Inc., 2004.
    • (2004) Inferring phylogenies
    • Felsenstein, J.1
  • 46
    • 0029935637 scopus 로고    scopus 로고
    • Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis
    • Lockhart PJ, Larkum AW, Steel M et al. Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis. Proc Natl Acad Sci USA 1996; 93(5):1930-1934.
    • (1996) Proc Natl Acad Sci USA , vol.93 , Issue.5 , pp. 1930-1934
    • Lockhart, P.J.1    Larkum, A.W.2    Steel, M.3
  • 47
    • 7244221755 scopus 로고    scopus 로고
    • Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
    • Kolaczkowski B, Thornton JW. Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous. Nature 2004; 431(7011):980-984.
    • (2004) Nature , vol.431 , Issue.7011 , pp. 980-984
    • Kolaczkowski, B.1    Thornton, J.W.2
  • 48
    • 0029834661 scopus 로고    scopus 로고
    • Inferring complex phylogenies
    • Hillis DM. Inferring complex phylogenies. Nature 1996; 383(6596):130-131.
    • (1996) Nature , vol.383 , Issue.6596 , pp. 130-131
    • Hillis, D.M.1
  • 49
    • 0030315308 scopus 로고    scopus 로고
    • General inconsistency conditions for maximum parsimony: Effects of branch lengths and increasing numbers of taxa
    • Kim J. General inconsistency conditions for maximum parsimony: Effects of branch lengths and increasing numbers of taxa. Syst Biol 1996; 45(3):363-374.
    • (1996) Syst Biol , vol.45 , Issue.3 , pp. 363-374
    • Kim, J.1
  • 50
    • 0032025857 scopus 로고    scopus 로고
    • Is it better to add taxa or characters to a difficult phylogenetic problem?
    • Graybeal A. Is it better to add taxa or characters to a difficult phylogenetic problem? Syst Biol 1998; 47(1):9-17.
    • (1998) Syst Biol , vol.47 , Issue.1 , pp. 9-17
    • Graybeal, A.1
  • 51
    • 0000909802 scopus 로고
    • The pitfalls of molecular phylogeny based on four species, as illustrated by the Cetacea/Artiodactyla relationships
    • Philippe H, Douzery E. The pitfalls of molecular phylogeny based on four species, as illustrated by the Cetacea/Artiodactyla relationships. Journal of Mammalian Evolution 1994; 2:133-152.
    • (1994) Journal of Mammalian Evolution , vol.2 , pp. 133-152
    • Philippe, H.1    Douzery, E.2
  • 52
    • 0034350422 scopus 로고    scopus 로고
    • More taxa or more characters revisited: Combining data from nuclear protein-encoding genes for phylogenetic analyses of Noctuoidea (Insecta: Lepidoptera)
    • Mitchell A, Mitter C, Regier JC. More taxa or more characters revisited: Combining data from nuclear protein-encoding genes for phylogenetic analyses of Noctuoidea (Insecta: Lepidoptera). Syst Biol 2000; 49(2):202-224.
    • (2000) Syst Biol , vol.49 , Issue.2 , pp. 202-224
    • Mitchell, A.1    Mitter, C.2    Regier, J.C.3
  • 53
    • 0036897677 scopus 로고    scopus 로고
    • Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling
    • Lin YH, McLenachan PA, Gore AR et al. Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling. Mol Biol Evol 2002; 19(12):2060-2070.
    • (2002) Mol Biol Evol , vol.19 , Issue.12 , pp. 2060-2070
    • Lin, Y.H.1    McLenachan, P.A.2    Gore, A.R.3
  • 54
    • 0031010579 scopus 로고    scopus 로고
    • Evidence for a clade of nematodes, arthropods and other moulting animals
    • Aguinaldo AM, Turbeville JM, Linford LS et al. Evidence for a clade of nematodes, arthropods and other moulting animals. Nature 1997; 387(6632):489-493.
    • (1997) Nature , vol.387 , Issue.6632 , pp. 489-493
    • Aguinaldo, A.M.1    Turbeville, J.M.2    Linford, L.S.3
  • 55
    • 0023823442 scopus 로고
    • Molecular phylogeny of the animal kingdom
    • Field KG, Olsen GJ, Lane DJ et al. Molecular phylogeny of the animal kingdom. Science 1988; 239(4841 Pt 1):748-753.
    • (1988) Science , vol.239 , Issue.4841 PART 1 , pp. 748-753
    • Field, K.G.1    Olsen, G.J.2    Lane, D.J.3
  • 56
    • 0035252569 scopus 로고    scopus 로고
    • Parallel adaptive radiations in two major clades of placental mammals
    • Madsen O, Scally M, Douady CJ et al. Parallel adaptive radiations in two major clades of placental mammals. Nature 2001; 409(6820):610-614.
    • (2001) Nature , vol.409 , Issue.6820 , pp. 610-614
    • Madsen, O.1    Scally, M.2    Douady, C.J.3
  • 57
    • 0035252080 scopus 로고    scopus 로고
    • Molecular phylogenetics and the origins of placental mammals
    • Murphy WJ, Eizirik E, Johnson WE et al. Molecular phylogenetics and the origins of placental mammals. Nature 2001; 409(6820):614-618.
    • (2001) Nature , vol.409 , Issue.6820 , pp. 614-618
    • Murphy, W.J.1    Eizirik, E.2    Johnson, W.E.3
  • 58
    • 0033604548 scopus 로고    scopus 로고
    • The earliest angiosperms: Evidence from mitochondrial, plastid and nuclear genomes
    • Qiu YL, Lee J, Bernasconi-Quadroni F et al. The earliest angiosperms: Evidence from mitochondrial, plastid and nuclear genomes. Nature 1999; 402(6760):404-407.
    • (1999) Nature , vol.402 , Issue.6760 , pp. 404-407
    • Qiu, Y.L.1    Lee, J.2    Bernasconi-Quadroni, F.3
  • 59
    • 0033604619 scopus 로고    scopus 로고
    • Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology
    • Soltis PS, Soltis DE, Chase MW. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature 1999; 402(6760):402-404.
    • (1999) Nature , vol.402 , Issue.6760 , pp. 402-404
    • Soltis, P.S.1    Soltis, D.E.2    Chase, M.W.3
  • 60
    • 0345874732 scopus 로고    scopus 로고
    • Coelomata and not ecdysozoa: Evidence from genome-wide phylogenetic analysis
    • Wolf YI, Rogozin IB, Koonin EV. Coelomata and not ecdysozoa: Evidence from genome-wide phylogenetic analysis. Genome Res 2004; 14(1):29-36.
    • (2004) Genome Res , vol.14 , Issue.1 , pp. 29-36
    • Wolf, Y.I.1    Rogozin, I.B.2    Koonin, E.V.3
  • 61
    • 0344952061 scopus 로고    scopus 로고
    • The evolutionary position of nematodes
    • Blair JE, Ikeo K, Gojobori T et al. The evolutionary position of nematodes. BMC Evol Biol 2002; 2(1):7.
    • (2002) BMC Evol Biol , vol.2 , Issue.1 , pp. 7
    • Blair, J.E.1    Ikeo, K.2    Gojobori, T.3
  • 62
    • 17744379783 scopus 로고    scopus 로고
    • The Opisthokonta and the Ecdysozoa may not be clades: Stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa
    • Philip GK, Creevey CJ, McInerney JO. The Opisthokonta and the Ecdysozoa may not be clades: Stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa. Mol Biol Evol 2005; 22(5):1175-1184.
    • (2005) Mol Biol Evol , vol.22 , Issue.5 , pp. 1175-1184
    • Philip, G.K.1    Creevey, C.J.2    McInerney, J.O.3
  • 63
    • 17744386162 scopus 로고    scopus 로고
    • Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
    • Philippe H, Lartillot N, Brinkmann H. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Mol Biol Evol 2005; 22(5):1246-1253.
    • (2005) Mol Biol Evol , vol.22 , Issue.5 , pp. 1246-1253
    • Philippe, H.1    Lartillot, N.2    Brinkmann, H.3
  • 64
    • 27844438226 scopus 로고    scopus 로고
    • Genome-scale evidence of the nematode-arthropod clade
    • Dopazo H, Dopazo J. Genome-scale evidence of the nematode-arthropod clade. Genome Biol 2005; 6(5):R41.
    • (2005) Genome Biol , vol.6 , Issue.5
    • Dopazo, H.1    Dopazo, J.2
  • 66
    • 0141685723 scopus 로고    scopus 로고
    • Delsuc F, Phillips MJ, Penny D. Comment on Hexapod origins: Monophyletic or paraphyletic? Science 2003; 301(5639):1482, (author reply 1482).
    • Delsuc F, Phillips MJ, Penny D. Comment on "Hexapod origins: Monophyletic or paraphyletic?" Science 2003; 301(5639):1482, (author reply 1482).
  • 67
    • 10344254308 scopus 로고    scopus 로고
    • Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I
    • Hrdy I, Hirt RP, Dolezal P et al. Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I. Nature 2004; 432(7017):618-622.
    • (2004) Nature , vol.432 , Issue.7017 , pp. 618-622
    • Hrdy, I.1    Hirt, R.P.2    Dolezal, P.3
  • 68
    • 19444384196 scopus 로고    scopus 로고
    • Should phylogenetic models be trying to 'fit an elephant'?
    • Steel M. Should phylogenetic models be trying to 'fit an elephant'? Trends Genet 2005; 21(6):307-309.
    • (2005) Trends Genet , vol.21 , Issue.6 , pp. 307-309
    • Steel, M.1
  • 69
    • 0030788417 scopus 로고    scopus 로고
    • Evidence for the early divergence of tryptophanyl- and tyrosyl-tRNA synthetases
    • Brown JR, Robb FT, Weiss R et al. Evidence for the early divergence of tryptophanyl- and tyrosyl-tRNA synthetases. J Mol Evol 1997; 45(1):9-16.
    • (1997) J Mol Evol , vol.45 , Issue.1 , pp. 9-16
    • Brown, J.R.1    Robb, F.T.2    Weiss, R.3
  • 70
    • 0032874259 scopus 로고    scopus 로고
    • The roofing of the universal tree of life is not reliable
    • Philippe H, Forterre P. The roofing of the universal tree of life is not reliable. J Mol Evol 1999; 49(4):509-523.
    • (1999) J Mol Evol , vol.49 , Issue.4 , pp. 509-523
    • Philippe, H.1    Forterre, P.2
  • 71
    • 0032825223 scopus 로고    scopus 로고
    • The root of the tree of life in the light of the covarion model
    • Lopez P, Forterre P, Philippe H. The root of the tree of life in the light of the covarion model. J Mol Evol 1999; 49:496-508.
    • (1999) J Mol Evol , vol.49 , pp. 496-508
    • Lopez, P.1    Forterre, P.2    Philippe, H.3
  • 72
    • 0033015732 scopus 로고    scopus 로고
    • Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies
    • Brinkmann H, Philippe H. Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies. Mol Biol Evol 1999; 16(6):817-825.
    • (1999) Mol Biol Evol , vol.16 , Issue.6 , pp. 817-825
    • Brinkmann, H.1    Philippe, H.2
  • 73
    • 14344261697 scopus 로고    scopus 로고
    • Rooting a phylogenetic tree with nonreversible substitution models
    • Yap VB, Speed T. Rooting a phylogenetic tree with nonreversible substitution models. BMC Evol Biol 2005; 5(1):2.
    • (2005) BMC Evol Biol , vol.5 , Issue.1 , pp. 2
    • Yap, V.B.1    Speed, T.2
  • 74
    • 0036182064 scopus 로고    scopus 로고
    • Evolved RNA secondary structure and the rooting of the universal tree of life
    • Caetano-Anolles G. Evolved RNA secondary structure and the rooting of the universal tree of life. J Mol Evol 2002; 54(3):333-345.
    • (2002) J Mol Evol , vol.54 , Issue.3 , pp. 333-345
    • Caetano-Anolles, G.1
  • 76
    • 0034702256 scopus 로고    scopus 로고
    • Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions
    • Philippe H, Lopez P, Brinkmann H et al. Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions. Proc R Soc Lond BS 2000; 267(1449):1213-1221.
    • (2000) Proc R Soc Lond BS , vol.267 , Issue.1449 , pp. 1213-1221
    • Philippe, H.1    Lopez, P.2    Brinkmann, H.3
  • 77
    • 0002214837 scopus 로고    scopus 로고
    • The molecular phylogeny of Eukaryota: Solid facts and uncertainties
    • Coombs G, Vickerman K, Sleigh M, Warren A, eds, Dordrecht: Kluwer
    • Philippe H, Adoutte A. The molecular phylogeny of Eukaryota: Solid facts and uncertainties. In: Coombs G, Vickerman K, Sleigh M, Warren A, eds. Evolutionary Relationships Among Protozoa. Dordrecht: Kluwer, 1998:25-56.
    • (1998) Evolutionary Relationships Among Protozoa , pp. 25-56
    • Philippe, H.1    Adoutte, A.2
  • 78
    • 0034602344 scopus 로고    scopus 로고
    • Baldauf SL, Roger AJ, Wenk-Siefert Iet al. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 2000; 290(5493):972-977.
    • Baldauf SL, Roger AJ, Wenk-Siefert Iet al. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 2000; 290(5493):972-977.
  • 79
    • 0032702602 scopus 로고    scopus 로고
    • Reconstructing early events in eukaryotic evolution
    • Roger AJ. Reconstructing early events in eukaryotic evolution. Am Nat 1999; 154:$146-$163.
    • (1999) Am Nat , vol.154
    • Roger, A.J.1
  • 80
  • 81
    • 0032710858 scopus 로고    scopus 로고
    • Phylogeny of the genera Entamoeba and Endolimax as deduced from small-subunit ribosomal RNA sequences
    • Silberman JD, Clark CG, Diamond LS et al. Phylogeny of the genera Entamoeba and Endolimax as deduced from small-subunit ribosomal RNA sequences. Mol Biol Evol 1999; 16(12):1740-1751.
    • (1999) Mol Biol Evol , vol.16 , Issue.12 , pp. 1740-1751
    • Silberman, J.D.1    Clark, C.G.2    Diamond, L.S.3
  • 82
    • 0036406924 scopus 로고    scopus 로고
    • Microsporidia: Biology and evolution of highly reduced intracellular parasites
    • Keeling PJ, Fast NM. Microsporidia: Biology and evolution of highly reduced intracellular parasites. Annu Rev Microbiol 2002; 56:93-116.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 93-116
    • Keeling, P.J.1    Fast, N.M.2
  • 83
    • 0029068423 scopus 로고
    • Direct evidence for secondary loss of mitochondria in Entamoeba histolytica
    • Clark CG, Roger AJ. Direct evidence for secondary loss of mitochondria in Entamoeba histolytica. Proc Natl Acad Sci USA 1995; 92(14):6518-6521.
    • (1995) Proc Natl Acad Sci USA , vol.92 , Issue.14 , pp. 6518-6521
    • Clark, C.G.1    Roger, A.J.2
  • 84
    • 0029856340 scopus 로고    scopus 로고
    • A possible mitochondrial gene in the early-branching amitochondriate protist Trichomonas vaginalis
    • Roger AJ, Clark CG, Doolittle WF. A possible mitochondrial gene in the early-branching amitochondriate protist Trichomonas vaginalis. Proc Nad Acad Sci USA 1996; 93(25):14618-14622.
    • (1996) Proc Nad Acad Sci USA , vol.93 , Issue.25 , pp. 14618-14622
    • Roger, A.J.1    Clark, C.G.2    Doolittle, W.F.3
  • 85
    • 0029963676 scopus 로고    scopus 로고
    • Presence of a mitochondrial-type 70-kd)a heat shock protein in Trichomonas vaginalis suggests a very early mitochondrial endosymbiosis in eukaryotes
    • Germot A, Philippe H, Le Guyader H. Presence of a mitochondrial-type 70-kd)a heat shock protein in Trichomonas vaginalis suggests a very early mitochondrial endosymbiosis in eukaryotes. Proc Natl Acad Sci USA 1996; 93(25):14614-14617.
    • (1996) Proc Natl Acad Sci USA , vol.93 , Issue.25 , pp. 14614-14617
    • Germot, A.1    Philippe, H.2    Le Guyader, H.3
  • 86
    • 0030844640 scopus 로고    scopus 로고
    • Evidence for loss of mitochondria in Microsporidia from a mitochondrial- type HSP70 in Nosema locustae
    • Germot A, Philippe H, Le Guyader H. Evidence for loss of mitochondria in Microsporidia from a mitochondrial- type HSP70 in Nosema locustae. Mol Biochem Parasitol 1997; 87(2):159-168.
    • (1997) Mol Biochem Parasitol , vol.87 , Issue.2 , pp. 159-168
    • Germot, A.1    Philippe, H.2    Le Guyader, H.3
  • 87
    • 0031892089 scopus 로고    scopus 로고
    • Roger AJ, Svard SG, Tovar Jet al. A mitochondrial-like chaperonin 60 gene in Giardia lamblia: Evidence that diplomonads once harbored an endosymbiont related to the progenitor of mitochondria. Proc Natl Acad Sci USA 1998; 95(1):229-234.
    • Roger AJ, Svard SG, Tovar Jet al. A mitochondrial-like chaperonin 60 gene in Giardia lamblia: Evidence that diplomonads once harbored an endosymbiont related to the progenitor of mitochondria. Proc Natl Acad Sci USA 1998; 95(1):229-234.
  • 88
    • 0029817685 scopus 로고    scopus 로고
    • A common evolutionary origin for mitochondria and hydrogenosomes
    • Bui ET, Bradley PJ, Johnson PJ. A common evolutionary origin for mitochondria and hydrogenosomes. Proc Natl Acad Sci USA 1996; 93(18):9651-9656.
    • (1996) Proc Natl Acad Sci USA , vol.93 , Issue.18 , pp. 9651-9656
    • Bui, E.T.1    Bradley, P.J.2    Johnson, P.J.3
  • 89
    • 0032988857 scopus 로고    scopus 로고
    • The mitosome, a novel organelle related to mitochondria in the amitochondrial parasite Entamoeba histolytica
    • Tovar J, Fischer A, Clark CG. The mitosome, a novel organelle related to mitochondria in the amitochondrial parasite Entamoeba histolytica. Mol Microbiol 1999; 32(5): 1013-1021.
    • (1999) Mol Microbiol , vol.32 , Issue.5 , pp. 1013-1021
    • Tovar, J.1    Fischer, A.2    Clark, C.G.3
  • 90
    • 0037158721 scopus 로고    scopus 로고
    • A mitochondrial remnant in the microsporidian Trachipleistophora hominis
    • Williams BA, Hirt RP, Lucocq JM et al. A mitochondrial remnant in the microsporidian Trachipleistophora hominis. Nature 2002; 418(6900):865-869.
    • (2002) Nature , vol.418 , Issue.6900 , pp. 865-869
    • Williams, B.A.1    Hirt, R.P.2    Lucocq, J.M.3
  • 91
    • 0344633597 scopus 로고    scopus 로고
    • Mitochondrial remnant organelles of Giardia function in iron-sulphur protein maturation
    • Tovar J, Leon-Avila G, Sanchez LB et al. Mitochondrial remnant organelles of Giardia function in iron-sulphur protein maturation. Nature 2003; 426(6963):172-176.
    • (2003) Nature , vol.426 , Issue.6963 , pp. 172-176
    • Tovar, J.1    Leon-Avila, G.2    Sanchez, L.B.3
  • 92
    • 14544284067 scopus 로고    scopus 로고
    • An anaerobic mitochondrion that produces hydrogen
    • Boxma B, de Graaf RM, van der Staay GW et al. An anaerobic mitochondrion that produces hydrogen. Nature 2005; 434(7029):74-79.
    • (2005) Nature , vol.434 , Issue.7029 , pp. 74-79
    • Boxma, B.1    de Graaf, R.M.2    van der Staay, G.W.3
  • 94
    • 33644782643 scopus 로고    scopus 로고
    • The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
    • Adl SM, Simpson AG, Farmer MA et al. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J Eukaryot Microbiol 2005; 52(5):399-451.
    • (2005) J Eukaryot Microbiol , vol.52 , Issue.5 , pp. 399-451
    • Adl, S.M.1    Simpson, A.G.2    Farmer, M.A.3
  • 95
    • 12544255323 scopus 로고    scopus 로고
    • The real 'kingdoms' of eukaryotes
    • Simpson AG, Roger AJ. The real 'kingdoms' of eukaryotes. Curr Biol 2004; 14(17):R693-696.
    • (2004) Curr Biol , vol.14 , Issue.17
    • Simpson, A.G.1    Roger, A.J.2
  • 96
    • 0032744297 scopus 로고    scopus 로고
    • The diversity of eukaryotes
    • Patterson DJ. The diversity of eukaryotes. Am Nat 1999; 154:$96-$124.
    • (1999) Am Nat , vol.154
    • Patterson, D.J.1
  • 97
    • 0033793019 scopus 로고    scopus 로고
    • Rare genomic changes as a tool for phylogenetics
    • Rokas A, Holland PW. Rare genomic changes as a tool for phylogenetics. Trends in Ecology and Evolution 2000; 15(11):454-459.
    • (2000) Trends in Ecology and Evolution , vol.15 , Issue.11 , pp. 454-459
    • Rokas, A.1    Holland, P.W.2
  • 98
    • 0027138675 scopus 로고
    • Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins
    • Baldauf SL, Palmer JD. Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins. Proc Natl Acad Sci USA 1993; 90(24):11558-11562.
    • (1993) Proc Natl Acad Sci USA , vol.90 , Issue.24 , pp. 11558-11562
    • Baldauf, S.L.1    Palmer, J.D.2
  • 99
    • 0032723027 scopus 로고    scopus 로고
    • A search for the origins of animals and fungi: Comparing and combining molecular data
    • Baldauf SL. A search for the origins of animals and fungi: Comparing and combining molecular data. Am Nat 1999; 154:S178-S188.
    • (1999) Am Nat , vol.154
    • Baldauf, S.L.1
  • 100
    • 22744445156 scopus 로고    scopus 로고
    • Monophyly of primary photosynthetic eukaryotes: Green plants, red algae, and glaucophytes
    • Rodriguez-Ezpeleta N, Brinkmann H, Burey SC et al. Monophyly of primary photosynthetic eukaryotes: Green plants, red algae, and glaucophytes. Current Biology 2005; 15(14):1325-1330.
    • (2005) Current Biology , vol.15 , Issue.14 , pp. 1325-1330
    • Rodriguez-Ezpeleta, N.1    Brinkmann, H.2    Burey, S.C.3
  • 102
    • 4143122089 scopus 로고    scopus 로고
    • Phylogenomics of eukaryotes: Impact of missing data on large alignments
    • Philippe H, Snell EA, Bapteste E et al. Phylogenomics of eukaryotes: Impact of missing data on large alignments. Mol Biol Evol 2004; 21(9):1740-1752.
    • (2004) Mol Biol Evol , vol.21 , Issue.9 , pp. 1740-1752
    • Philippe, H.1    Snell, E.A.2    Bapteste, E.3
  • 103
    • 0037327022 scopus 로고    scopus 로고
    • The symbiotic birth and spread of plastids: Hows many times and whodunit?
    • Palmer JD. The symbiotic birth and spread of plastids: Hows many times and whodunit? J Phycol 2003; 39:4-11.
    • (2003) J Phycol , vol.39 , pp. 4-11
    • Palmer, J.D.1
  • 104
    • 22744445156 scopus 로고    scopus 로고
    • Rodrfguez-Ezpeleta N, Brinkmann H, Burey Set al. Monophyly of primary photosynthetic eukaryotes: Green plants, red algae and glaucophytes. Current Biology 2005.
    • Rodrfguez-Ezpeleta N, Brinkmann H, Burey Set al. Monophyly of primary photosynthetic eukaryotes: Green plants, red algae and glaucophytes. Current Biology 2005.
  • 105
    • 27944503381 scopus 로고    scopus 로고
    • A plastid in the making: Evidence for a second primary endosymbiosis
    • Marin B, EC MN, Melkonian M. A plastid in the making: Evidence for a second primary endosymbiosis. Protist 2005; 156(4):425-432.
    • (2005) Protist , vol.156 , Issue.4 , pp. 425-432
    • Marin, B.1    EC, M.N.2    Melkonian, M.3
  • 106
    • 0029968249 scopus 로고    scopus 로고
    • Expression of a continuous open reading frame encoding subunits 1 and 2 of cytochrome c oxidase in the mitochondrial DNA of Acanthamoeba castellanii
    • Lonergan KM, Gray MW. Expression of a continuous open reading frame encoding subunits 1 and 2 of cytochrome c oxidase in the mitochondrial DNA of Acanthamoeba castellanii. J Mol Biol 1996; 257(5):1019-1030.
    • (1996) J Mol Biol , vol.257 , Issue.5 , pp. 1019-1030
    • Lonergan, K.M.1    Gray, M.W.2
  • 107
    • 0037022379 scopus 로고    scopus 로고
    • The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba
    • Bapteste E, Brinkmann H, Lee JA et al. The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proc Natl Acad Sci USA 2002; 99(3):1414-1419.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.3 , pp. 1414-1419
    • Bapteste, E.1    Brinkmann, H.2    Lee, J.A.3
  • 108
    • 0032838597 scopus 로고    scopus 로고
    • Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote familly tree
    • Cavalier-Smith T. Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote familly tree. J Eukaryot Microbiol 1999; 46(4):347-366.
    • (1999) J Eukaryot Microbiol , vol.46 , Issue.4 , pp. 347-366
    • Cavalier-Smith, T.1
  • 109
    • 0344440735 scopus 로고    scopus 로고
    • Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids
    • Harper JT, Keeling PJ. Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol Biol Evol 2003; 20(10):1730-1735.
    • (2003) Mol Biol Evol , vol.20 , Issue.10 , pp. 1730-1735
    • Harper, J.T.1    Keeling, P.J.2
  • 110
    • 6344265521 scopus 로고    scopus 로고
    • Gene replacement of fructose-l,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates
    • Patron NJ, Rogers MB, Keeling PJ. Gene replacement of fructose-l,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates. Eukaryot Cell 2004; 3(5):1169-1175.
    • (2004) Eukaryot Cell , vol.3 , Issue.5 , pp. 1169-1175
    • Patron, N.J.1    Rogers, M.B.2    Keeling, P.J.3
  • 111
    • 85069126067 scopus 로고    scopus 로고
    • A "Green" phosphoribulokinase in complex algae with red plastids: Evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts and dinoflagellates
    • in press
    • Petersen J, Teich R, Brinkmann H et al. A "Green" phosphoribulokinase in complex algae with red plastids: Evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts and dinoflagellates. Journal of molecular evolution 2005; 60, (in press).
    • (2005) Journal of molecular evolution , pp. 60
    • Petersen, J.1    Teich, R.2    Brinkmann, H.3
  • 112
    • 13244270095 scopus 로고    scopus 로고
    • On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes
    • Harper JT, Waanders E, Keeling PJ. On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes. Int J Syst Evol Microbiol 2005; 55(Pt 1):487-496.
    • (2005) Int J Syst Evol Microbiol , vol.55 , Issue.PART 1 , pp. 487-496
    • Harper, J.T.1    Waanders, E.2    Keeling, P.J.3
  • 113
    • 1942469414 scopus 로고    scopus 로고
    • A molecular timeline for the origin of photosynthetic eukaryotes
    • Yoon HS, Hackett JD, Ciniglia C et al. A molecular timeline for the origin of photosynthetic eukaryotes. Mol Biol Evol 2004; 21(5):809-818.
    • (2004) Mol Biol Evol , vol.21 , Issue.5 , pp. 809-818
    • Yoon, H.S.1    Hackett, J.D.2    Ciniglia, C.3
  • 114
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • Martin W, Rujan T, Richly E et al. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA 2002; 99(19):12246-12251.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.19 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3
  • 115
    • 0036791132 scopus 로고    scopus 로고
    • Evolutionary history of "early-diverging" eukaryotes: The excavate taxon Carpediemonas is a close relative of Giardia
    • Simpson AG, Roger AJ, Silberman JD et al. Evolutionary history of "early-diverging" eukaryotes: The excavate taxon Carpediemonas is a close relative of Giardia. Mol Biol Evol 2002; 19(10):1782-1791.
    • (2002) Mol Biol Evol , vol.19 , Issue.10 , pp. 1782-1791
    • Simpson, A.G.1    Roger, A.J.2    Silberman, J.D.3
  • 116
    • 0003265745 scopus 로고    scopus 로고
    • Cavalier-Smith T. The excavate protozoan phyla Metamonada Grasse emend. (Anaeromonadea, Parabasalia, Carpediemonas, Eopharyngia) and Loukozoa emend. (Jakobea, Malawimonas): Their evolutionary affinities and new higher taxa. Int J Syst Evol Microbiol 2003; 53(Pt 6):1741-1758.
    • Cavalier-Smith T. The excavate protozoan phyla Metamonada Grasse emend. (Anaeromonadea, Parabasalia, Carpediemonas, Eopharyngia) and Loukozoa emend. (Jakobea, Malawimonas): Their evolutionary affinities and new higher taxa. Int J Syst Evol Microbiol 2003; 53(Pt 6):1741-1758.
  • 117
    • 2542512417 scopus 로고    scopus 로고
    • The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes
    • 101
    • Nikolaev SI, Berney C, Fahrni JF et al. The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes. Proc Natl Acad Sci USA 25 2004; 101(21):8066-8071.
    • (2004) Proc Natl Acad Sci USA , vol.25 , Issue.21 , pp. 8066-8071
    • Nikolaev, S.I.1    Berney, C.2    Fahrni, J.F.3
  • 118
    • 14544283723 scopus 로고    scopus 로고
    • Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data
    • Arisue N, Hasegawa M, Hashimoto T. Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data. Mol Biol Evol 2005; 22(3):409-420.
    • (2005) Mol Biol Evol , vol.22 , Issue.3 , pp. 409-420
    • Arisue, N.1    Hasegawa, M.2    Hashimoto, T.3
  • 119
    • 20444446106 scopus 로고    scopus 로고
    • Bass D, Moreira D, Lopez-Garcia Pet al. Polyubiquitin insertions and the phylogeny of Cercozoa and Rhizaria. Protist 2005; 156(2):149-161.
    • Bass D, Moreira D, Lopez-Garcia Pet al. Polyubiquitin insertions and the phylogeny of Cercozoa and Rhizaria. Protist 2005; 156(2):149-161.
  • 120
    • 0345328163 scopus 로고    scopus 로고
    • Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota)
    • Simpson AG. Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota). Int J Syst Evol Microbiol 2003; 53(Pt 6):1759-1777.
    • (2003) Int J Syst Evol Microbiol , vol.53 , Issue.PART 6 , pp. 1759-1777
    • Simpson, A.G.1
  • 121
    • 27844547962 scopus 로고    scopus 로고
    • Hampl V, Horner DS, Dyal Pet al. Inference of the phylogenetic position of oxymonads based on nine genes: Support for metamonada and excavata. Mol Biol Evol 2005; 22(12):2508-2518.
    • Hampl V, Horner DS, Dyal Pet al. Inference of the phylogenetic position of oxymonads based on nine genes: Support for metamonada and excavata. Mol Biol Evol 2005; 22(12):2508-2518.
  • 122
    • 0036208071 scopus 로고    scopus 로고
    • The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa
    • Cavalier-Smith T. The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa. Int J Syst Evol Microbiol 2002; 52(Pt 2):297-354.
    • (2002) Int J Syst Evol Microbiol , vol.52 , Issue.PART 2 , pp. 297-354
    • Cavalier-Smith, T.1
  • 123
    • 0034621871 scopus 로고    scopus 로고
    • Parabasalian flagellates are ancient eukaryotes
    • Keeling PJ, Palmer JD. Parabasalian flagellates are ancient eukaryotes. Nature 2000; 405(6787):635-637.
    • (2000) Nature , vol.405 , Issue.6787 , pp. 635-637
    • Keeling, P.J.1    Palmer, J.D.2
  • 124
    • 0036273056 scopus 로고    scopus 로고
    • The potential value of indels as phylogenetic markers: Position of trichomonads as a case study
    • Bapteste E, Philippe H. The potential value of indels as phylogenetic markers: Position of trichomonads as a case study. Mol Biol Evol 2002; 19(6):972-977.
    • (2002) Mol Biol Evol , vol.19 , Issue.6 , pp. 972-977
    • Bapteste, E.1    Philippe, H.2
  • 125
    • 2342498282 scopus 로고    scopus 로고
    • Polymorphic insertions and deletions in parabasalian enolase genes
    • Keeling PJ. Polymorphic insertions and deletions in parabasalian enolase genes. J Mol Evol 2004; 58(5):550-556.
    • (2004) J Mol Evol , vol.58 , Issue.5 , pp. 550-556
    • Keeling, P.J.1
  • 126
    • 0037025197 scopus 로고    scopus 로고
    • Rooting the eukaryote tree by using a derived gene fusion
    • Stechmann A, Cavalier-Smith T. Rooting the eukaryote tree by using a derived gene fusion. Science 2002; 297(5578):89-91.
    • (2002) Science , vol.297 , Issue.5578 , pp. 89-91
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 127
    • 0034739441 scopus 로고    scopus 로고
    • Evolutionary implications of the mosaic pyrimidine-biosynthetic pathway in eukaryotes
    • Nara T, Hshimoto T, Aoki T. Evolutionary implications of the mosaic pyrimidine-biosynthetic pathway in eukaryotes. Gene 2000; 257(2):209-222.
    • (2000) Gene , vol.257 , Issue.2 , pp. 209-222
    • Nara, T.1    Hshimoto, T.2    Aoki, T.3
  • 128
    • 0041919404 scopus 로고    scopus 로고
    • The root of the eukaryote tree pinpointed
    • Stechmann A, Cavalier-Smith T. The root of the eukaryote tree pinpointed. Curr Biol 2003; 13(17):R665-666.
    • (2003) Curr Biol , vol.13 , Issue.17
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 129
    • 24144503755 scopus 로고    scopus 로고
    • Myosin domain evolution and the primary divergence of eukaryotes
    • Richards TA, Cavalier-Smith T. Myosin domain evolution and the primary divergence of eukaryotes. Nature 2005; 436(7054):1113-1118.
    • (2005) Nature , vol.436 , Issue.7054 , pp. 1113-1118
    • Richards, T.A.1    Cavalier-Smith, T.2
  • 130
    • 0031464189 scopus 로고    scopus 로고
    • On the evolution of the single-subunit RNA polymerases
    • Cermakian N, Ikeda TM, Miramontes P et al. On the evolution of the single-subunit RNA polymerases. J Mol Evol 1997; 45(6):671-681.
    • (1997) J Mol Evol , vol.45 , Issue.6 , pp. 671-681
    • Cermakian, N.1    Ikeda, T.M.2    Miramontes, P.3
  • 131
    • 2942568227 scopus 로고    scopus 로고
    • A molecular timescale of eukaryote evolution and the rise of complex multicellular life
    • Hedges SB, Blair JE, Venturi ML et al. A molecular timescale of eukaryote evolution and the rise of complex multicellular life. BMC Evol Biol 2004; 4:2.
    • (2004) BMC Evol Biol , vol.4 , pp. 2
    • Hedges, S.B.1    Blair, J.E.2    Venturi, M.L.3
  • 132
    • 7444237566 scopus 로고    scopus 로고
    • The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
    • Douzery EJ, Snell EA, Bapteste E et al. The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils? Proc Nad Acad Sci USA 2004, (10 19).
    • (2004) Proc Nad Acad Sci USA , vol.10 , pp. 19
    • Douzery, E.J.1    Snell, E.A.2    Bapteste, E.3
  • 133
    • 1642554676 scopus 로고    scopus 로고
    • Reading the entrails of chickens: Molecular timescales of evolution and the illusion of precision
    • Graur D, Martin W. Reading the entrails of chickens: Molecular timescales of evolution and the illusion of precision. Trends Genet 2004; 20(2):80-86.
    • (2004) Trends Genet , vol.20 , Issue.2 , pp. 80-86
    • Graur, D.1    Martin, W.2
  • 134
    • 0037373563 scopus 로고    scopus 로고
    • The modern molecular clock
    • Bromham L, Penny D. The modern molecular clock. Nat Rev Genet 2003; 4(3):216-224.
    • (2003) Nat Rev Genet , vol.4 , Issue.3 , pp. 216-224
    • Bromham, L.1    Penny, D.2
  • 135
    • 0030773749 scopus 로고    scopus 로고
    • A nonparametric approach to estimating divergence times in the absence of rate constancy
    • Sanderson MJ. A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol Biol Evol 1997; 14(12):1218-1231.
    • (1997) Mol Biol Evol , vol.14 , Issue.12 , pp. 1218-1231
    • Sanderson, M.J.1
  • 136
    • 0031741182 scopus 로고    scopus 로고
    • Estimating the rate of evolution of the rate of molecular evolution
    • Thorne JL, Kishino H, Painter IS. Estimating the rate of evolution of the rate of molecular evolution. Mol Biol Evol 1998; 15(12):1647-1657.
    • (1998) Mol Biol Evol , vol.15 , Issue.12 , pp. 1647-1657
    • Thorne, J.L.1    Kishino, H.2    Painter, I.S.3
  • 137
    • 0034077901 scopus 로고    scopus 로고
    • A compound poisson process for relaxing the molecular clock
    • Huelsenbeck JP, Larget B, Swofford D. A compound poisson process for relaxing the molecular clock. Genetics 2000; 154(4):1879-1892.
    • (2000) Genetics , vol.154 , Issue.4 , pp. 1879-1892
    • Huelsenbeck, J.P.1    Larget, B.2    Swofford, D.3
  • 138
    • 0033921801 scopus 로고    scopus 로고
    • The power of relative rates tests depends on the data
    • Bromham L, Penny D, Rambaut A et al. The power of relative rates tests depends on the data. J Mol Evol 2000; 50(3):296-301.
    • (2000) J Mol Evol , vol.50 , Issue.3 , pp. 296-301
    • Bromham, L.1    Penny, D.2    Rambaut, A.3
  • 139
    • 0006503205 scopus 로고    scopus 로고
    • What can phylogenetic patterns tell us about the evolutionary processes generating biodiversity?
    • Hochberg M, Clobert J, Barbault R, eds, Oxford University Press
    • Philippe H, Adoutte A. What can phylogenetic patterns tell us about the evolutionary processes generating biodiversity? In: Hochberg M, Clobert J, Barbault R, eds. Aspects of the Genesis and Maintenance of Biological Diversity. Oxford University Press, 1996:41-59.
    • (1996) Aspects of the Genesis and Maintenance of Biological Diversity , pp. 41-59
    • Philippe, H.1    Adoutte, A.2
  • 140
    • 1542332885 scopus 로고    scopus 로고
    • Time flies, a new molecular time-scale for brachyceran fly evolution without a clock
    • Wiegmann BM, Yeates DK, Thorne JL et al. Time flies, a new molecular time-scale for brachyceran fly evolution without a clock. Syst Biol 2003; 52(6):745-756.
    • (2003) Syst Biol , vol.52 , Issue.6 , pp. 745-756
    • Wiegmann, B.M.1    Yeates, D.K.2    Thorne, J.L.3
  • 141
    • 0037417891 scopus 로고    scopus 로고
    • Placental mammal diversification and the Cretaceous-Tertiary boundary
    • Springer MS, Murphy WJ, Eizirik E et al. Placental mammal diversification and the Cretaceous-Tertiary boundary. Proc Natl Acad Sci USA 2003; 100(3):1056-1061.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.3 , pp. 1056-1061
    • Springer, M.S.1    Murphy, W.J.2    Eizirik, E.3
  • 142
    • 0035811487 scopus 로고    scopus 로고
    • Morphological and ecological complexity in early eukaryotic ecosystems
    • Javaux EJ, Knoll AH, Walter MR. Morphological and ecological complexity in early eukaryotic ecosystems. Nature 2001; 412(6842):66-69.
    • (2001) Nature , vol.412 , Issue.6842 , pp. 66-69
    • Javaux, E.J.1    Knoll, A.H.2    Walter, M.R.3
  • 143
    • 0042475241 scopus 로고    scopus 로고
    • Recognizing and interpreting the fossils of early eukaryotes
    • Javaux EJ, Knoll AH, Walter M. Recognizing and interpreting the fossils of early eukaryotes. Orig Life Evol Biosph 2003; 33(1):75-94.
    • (2003) Orig Life Evol Biosph , vol.33 , Issue.1 , pp. 75-94
    • Javaux, E.J.1    Knoll, A.H.2    Walter, M.3
  • 144
    • 0033551919 scopus 로고    scopus 로고
    • Archean molecular fossils and the early rise of eukaryotes
    • Brocks JJ, Logan GA, Buick R et al. Archean molecular fossils and the early rise of eukaryotes. Science 1999; 285(5430):1033-1036.
    • (1999) Science , vol.285 , Issue.5430 , pp. 1033-1036
    • Brocks, J.J.1    Logan, G.A.2    Buick, R.3
  • 145
    • 4944261948 scopus 로고    scopus 로고
    • Modelling the recent common ancestry of all living humans
    • Rohde DL, Olson S, Chang JT. Modelling the recent common ancestry of all living humans. Nature 2004; 431(7008):562-566.
    • (2004) Nature , vol.431 , Issue.7008 , pp. 562-566
    • Rohde, D.L.1    Olson, S.2    Chang, J.T.3
  • 146
    • 1642339676 scopus 로고    scopus 로고
    • Cladogenesis, coalescence and the evolution of the three domains of life
    • Zhaxybayeva O, Gogarten JP. Cladogenesis, coalescence and the evolution of the three domains of life. Trends Genet 2004; 20(4): 182-187.
    • (2004) Trends Genet , vol.20 , Issue.4 , pp. 182-187
    • Zhaxybayeva, O.1    Gogarten, J.P.2
  • 147
    • 0029663540 scopus 로고    scopus 로고
    • Late proterozoic rise in atmospheric oxygen concentration inferred from phylogenetic and sulphur-isotope studies
    • Canfield DE, Teske A. Late proterozoic rise in atmospheric oxygen concentration inferred from phylogenetic and sulphur-isotope studies. Nature 1996; 382:127-132.
    • (1996) Nature , vol.382 , pp. 127-132
    • Canfield, D.E.1    Teske, A.2
  • 148
    • 0035900653 scopus 로고    scopus 로고
    • Reconstructing/deconstructing the earliest eukaryotes: How comparative genomics can help
    • Dacks JB, Doolittle WF. Reconstructing/deconstructing the earliest eukaryotes: How comparative genomics can help. Cell 2001; 107(4):419-425.
    • (2001) Cell , vol.107 , Issue.4 , pp. 419-425
    • Dacks, J.B.1    Doolittle, W.F.2
  • 149
    • 4444252876 scopus 로고    scopus 로고
    • Speculations on the evolution of 9 + 2 organelles and the role of central pair microtubules
    • Mitchell DR. Speculations on the evolution of 9 + 2 organelles and the role of central pair microtubules. Biol Cell 2004; 96(9):691-696.
    • (2004) Biol Cell , vol.96 , Issue.9 , pp. 691-696
    • Mitchell, D.R.1
  • 152
    • 0017771466 scopus 로고
    • Evolution and tinkering
    • Jacob F. Evolution and tinkering. Science 1977; 196(4295):1161-1166.
    • (1977) Science , vol.196 , Issue.4295 , pp. 1161-1166
    • Jacob, F.1
  • 153
    • 0033214077 scopus 로고    scopus 로고
    • Where is the root of the universal tree of life?
    • Forterre P, Philippe H. Where is the root of the universal tree of life? BioEssays 1999; 21:871-879.
    • (1999) BioEssays , vol.21 , pp. 871-879
    • Forterre, P.1    Philippe, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.