Is the Felsenstein zone a fly trap?

Systematic Biology

Volumn 46, Issue 1, 1997, Pages 69-74

  Huelsenbeck, John P ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Felsenstein zone; Insect phylogeny; Long branch attraction; Neighbor joining; Parsimony

Indexed keywords

DIPTERA; HEXAPODA; INSECTA; STREPSIPTERA;

RIBOSOME DNA; RNA 18S;

ANIMAL; ARTICLE; CLASSIFICATION; GENETICS; INSECT; MOLECULAR EVOLUTION; PHYLOGENY;

ANIMALS; DNA, RIBOSOMAL; EVOLUTION, MOLECULAR; INSECTS; PHYLOGENY; RNA, RIBOSOMAL, 18S;

EID: 0031084114     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1093/sysbio/46.1.69     Document Type: Article

References (31)

1. ARNETT, R. H. 1968. The beetles of the United States. A manual for identification. American Entomology Institute, Ann Arbor, Michigan.
2. CARMEAN, D., AND B. CRESPI. 1995. Do long branches attract flies? Nature 373:666.
3. CHALWATZIS, N., A. BAUR, E. STETZER, R. KINZELBACH, AND F. K. ZIMMERMAN. 1995. Strongly expanded 18S rRNA genes correlated with a peculiar morphology in the insect order Strepsiptera. Zoology 98:115-126.
4. CROWSON, R. A. 1960. The phylogeny of the Coleoptera. Annu. Rev. Entomol. 5:111-134.
5. CROWSON, R. A. 1981. The biology of the Coleoptera. Academic Press, London.
6. EFRON, B. 1979. Bootstrap methods: Another look at the jackknife. Ann. Stat. 7:1-26.
7. EFRON, B. 1982. The jackknife, the bootstrap, and other resampling plans. CBMS-NSF Reg. Conf. Ser. Appl. Math. No. 38. Society for Industrial and Applied Mathematics, Philadelphia.
8. FAITH, D. 1991. Cladistic permutation tests for monophyly and nonmonophyly. Syst. Zool. 40:366-375.
9. FELSENSTEIN, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
10. FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:368-376.
11. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
12. FITCH, W. M. 1971. Toward defining the course of evolution: Minimal change for a specific tree topology. Syst. Zool. 20:406-416.
13. GOLDMAN, N. 1993. Statistical tests of models of DNA substitution. J. Mol. Evol. 36:182-198.
14. HASEGAWA, M., H. KISHINO, AND T. YANO. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
15. HENDY, M. D., AND D. PENNY. 1989. A framework for the quantitative study of evolutionary trees. Syst. Zool. 38:297-309.
16. HILLIS, D. M. 1996. Inferring complex phylogenies. Nature 383:130-131.
17. HUELSENBECK, J. P. 1991. When are fossils better than extant taxa in phylogenetic analysis? Syst. Zool. 40: 458-469.
18. HUELSENBECK, J. P., AND J. J. BULL. 1996. A likelihood ratio test for detection of conflicting phylogenetic signal. Syst. Biol. 45:92-98.
19. HUELSENBECK, J. P., J. J. BULL, AND C. W. CUNNINGHAM. 1996. Combining data in phylogenetic analysis. Trends Ecol. Evol. 11:152-158.
20. HUELSENBECK, J. P., AND D. M. HILLIS. 1993. Success of phylogenetic methods in the four-taxon case. Syst. Biol. 42:247-264.
21. JUKES, T. H., AND C. R. CANTOR. 1969. Evolution of protein molecules. Pages 21-132 in Mammalian protein metabolism (H. Munro, ed.). Academic Press, New York.
22. KATHIRITHAMBY, J. 1991. Strepsiptera. Pages 684-695 in The insects of Australia, 2nd edition (I. D. Naumann, P. B. Carne, J. F. Lawrence, E. S. Nielsen, J. P. Spradberry, R. W. Taylor, M. J. Whitten, and M. J. Littlejohn, eds.). CSIRO, Melbourne Univ. Press, Melbourne.
23. KIDD, K. K., AND L. A. SGARAMELLA-ZONTA. 1971. Phylogenetic analysis: Concepts and methods. Am. J. Hum. Genet. 23:235-252.
24. KIMURA, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
25. KISHINO, H., AND M. HASEGAWA. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29: 170-179.
26. KRISTENSEN, N. P. 1991. Phylogeny of extant hexapods. Pages 125-140 in The insects of Australia, 2nd edition (I. D. Naumann, P. B. Carne, J. F. Lawrence, E. S. Nielsen, J. P. Spradbeary, R. W. Taylor, M. J. Whitten, and M. J. Littlejohn, eds.). CSIRO, Melbourne Univ. Press, Melbourne.
27. ROSS, H. H., C. A. ROSS, AND J. R. P. ROSS. 1982. A text book of entomology, 4th edition. Wiley, New York.
28. SWOFFORD, D. L. 1996. PAUF*: Phylogenetic analysis using parsimony (*and other methods), version 4.0. Sinauer, Sunderland, Massachusetts.
29. YANG, Z. 1993. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-1401.
30. YANG, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods. J. Mol. Evol. 39: 306-314.
31. YANG, Z. 1995. Phylogenetic analysis using maximum likelihood (PAML). Institute of Molecular Evolution and Genetics, Pennsylvania State Univ., University Park.