-
1
-
-
84894302147
-
Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification
-
Alekseyenko AA, Gorchakov AA, Kharchenko PV, Kuroda MI. 2014a. Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification. Proc Natl Acad Sci 111: 2488– 2493.
-
(2014)
Proc Natl Acad Sci 111: 2488–
, pp. 2493
-
-
Alekseyenko, A.A.1
Gorchakov, A.A.2
Kharchenko, P.V.3
Kuroda, M.I.4
-
2
-
-
84903771634
-
Heterochromatin-associated interactions of Drosophila HP1a with dADD1, HIPP1, and repetitive RNAs
-
Alekseyenko AA, Gorchakov AA, Zee BM, Fuchs SM, Kharchenko PV, Kuroda MI. 2014b. Heterochromatin-associated interactions of Drosophila HP1a with dADD1, HIPP1, and repetitive RNAs. Genes Dev 28: 1445–1460.
-
(2014)
Genes Dev
, vol.28
, pp. 1445-1460
-
-
Alekseyenko, A.A.1
Gorchakov, A.A.2
Zee, B.M.3
Fuchs, S.M.4
Kharchenko, P.V.5
Kuroda, M.I.6
-
3
-
-
84949228956
-
BioTAP-XL: Cross-linking/tandem affinity purification to study DNA targets, RNA, and protein components of chromatin-associated complexes
-
Alekseyenko AA, McElroy KA, Kang H, Zee BM, Kharchenko PV, Kuroda MI. 2015. BioTAP-XL: cross-linking/tandem affinity purification to study DNA targets, RNA, and protein components of chromatin-associated complexes. Curr Protoc Mol Biol 109: 21.30.1–21.30.32.
-
(2015)
Curr Protoc Mol Biol
, vol.109
-
-
Alekseyenko, A.A.1
McElroy, K.A.2
Kang, H.3
Zee, B.M.4
Kharchenko, P.V.5
Kuroda, M.I.6
-
4
-
-
0037451302
-
Transcription factor YY1 functions as a PcG protein in vivo
-
Atchison L, Ghias A, Wilkinson F, Bonini N, Atchison ML. 2003. Transcription factor YY1 functions as a PcG protein in vivo. EMBO J 22: 1347–1358.
-
(2003)
EMBO J
, vol.22
, pp. 1347-1358
-
-
Atchison, L.1
Ghias, A.2
Wilkinson, F.3
Bonini, N.4
Atchison, M.L.5
-
5
-
-
77951746919
-
CtBP levels control intergenic transcripts, PHO/YY1 DNA binding, and PcG recruitment to DNA
-
Basu A, Atchison ML. 2010. CtBP levels control intergenic transcripts, PHO/YY1 DNA binding, and PcG recruitment to DNA. J Cell Biochem 110: 62–69.
-
(2010)
J Cell Biochem
, vol.110
, pp. 62-69
-
-
Basu, A.1
Atchison, M.L.2
-
6
-
-
0035073765
-
Polycomb group proteins and heritable silencing of Drosophila Hox genes
-
Beuchle D, Struhl G, Muller J. 2001. Polycomb group proteins and heritable silencing of Drosophila Hox genes. Development 128: 993–1004.
-
(2001)
Development
, vol.128
, pp. 993-1004
-
-
Beuchle, D.1
Struhl, G.2
Muller, J.3
-
7
-
-
0029896251
-
The Drosophila Polycomb group gene sex comb on midleg (Scm) encodes a zinc finger protein with similarity to polyhomeotic protein
-
Bornemann D, Miller E, Simon J. 1996. The Drosophila Polycomb group gene sex comb on midleg (Scm) encodes a zinc finger protein with similarity to polyhomeotic protein. Development 122: 1621–1630.
-
(1996)
Development
, vol.122
, pp. 1621-1630
-
-
Bornemann, D.1
Miller, E.2
Simon, J.3
-
8
-
-
0031711921
-
Expression and properties of wild-type and mutant forms of the Drosophila sex comb on midleg (SCM) repressor protein
-
Bornemann D, Miller E, Simon J. 1998. Expression and properties of wild-type and mutant forms of the Drosophila sex comb on midleg (SCM) repressor protein. Genetics 150: 675–686.
-
(1998)
Genetics
, vol.150
, pp. 675-686
-
-
Bornemann, D.1
Miller, E.2
Simon, J.3
-
9
-
-
0023020366
-
Maternal expression of genes that regulate the bithorax complex of Drosophila melanogaster
-
Breen TR, Duncan IM. 1986. Maternal expression of genes that regulate the bithorax complex of Drosophila melanogaster. Dev Biol 118: 442–456.
-
(1986)
Dev Biol
, vol.118
, pp. 442-456
-
-
Breen, T.R.1
Duncan, I.M.2
-
10
-
-
0032087892
-
The Drosophila Polycomb group gene pleiohomeotic encodes a DNA binding protein with homology to the transcription factor YY1
-
Brown JL, Mucci D, Whiteley M, Dirksen ML, Kassis JA. 1998. The Drosophila Polycomb group gene pleiohomeotic encodes a DNA binding protein with homology to the transcription factor YY1. Mol Cell 1: 1057–1064.
-
(1998)
Mol Cell
, vol.1
, pp. 1057-1064
-
-
Brown, J.L.1
Mucci, D.2
Whiteley, M.3
Dirksen, M.L.4
Kassis, J.A.5
-
11
-
-
0037268947
-
The Drosophila pho-like gene encodes a YY1-related DNA binding protein that is redundant with pleiohomeotic in homeotic gene silencing
-
Brown JL, Fritsch C, Mueller J, Kassis JA. 2003. The Drosophila pho-like gene encodes a YY1-related DNA binding protein that is redundant with pleiohomeotic in homeotic gene silencing. Development 130: 285–294.
-
(2003)
Development
, vol.130
, pp. 285-294
-
-
Brown, J.L.1
Fritsch, C.2
Mueller, J.3
Kassis, J.A.4
-
12
-
-
0034954885
-
The MCP silencer of the Drosophila Abd-B gene requires both Pleiohomeotic and GAGA factor for the maintenance of repression
-
Busturia A, Lloyd A, Bejarano F, Zavortink M, Xin H, Sakonju S. 2001. The MCP silencer of the Drosophila Abd-B gene requires both Pleiohomeotic and GAGA factor for the maintenance of repression. Development 128: 2163–2173.
-
(2001)
Development
, vol.128
, pp. 2163-2173
-
-
Busturia, A.1
Lloyd, A.2
Bejarano, F.3
Zavortink, M.4
Xin, H.5
Sakonju, S.6
-
13
-
-
84883217456
-
Polycomb repressive complex 2 contributes to DNA doublestrand break repair
-
Campbell S, Ismail IH, Young LC, Poirier GG, Hendzel MJ. 2013. Polycomb repressive complex 2 contributes to DNA doublestrand break repair. Cell cycle 12: 2675–2683.
-
(2013)
Cell Cycle
, vol.12
, pp. 2675-2683
-
-
Campbell, S.1
Ismail, I.H.2
Young, L.C.3
Poirier, G.G.4
Hendzel, M.J.5
-
14
-
-
0036830642
-
Role of histone H3 lysine 27 methylation in Polycomb-group silencing
-
Cao R, Wang L, Wang H, Xia L, Erdjument-Bromage H, Tempst P, Jones RS, Zhang Y. 2002. Role of histone H3 lysine 27 methylation in Polycomb-group silencing. Science 298: 1039–1043.
-
(2002)
Science
, vol.298
, pp. 1039-1043
-
-
Cao, R.1
Wang, L.2
Wang, H.3
Xia, L.4
Erdjument-Bromage, H.5
Tempst, P.6
Jones, R.S.7
Zhang, Y.8
-
15
-
-
78649349810
-
A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage
-
Chou DM, Adamson B, Dephoure NE, Tan X, Nottke AC, Hurov KE, Gygi SP, Colaiacovo MP, Elledge SJ. 2010. A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage. Proc Natl Acad Sci 107: 18475–18480.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 18475-18480
-
-
Chou, D.M.1
Adamson, B.2
Dephoure, N.E.3
Tan, X.4
Nottke, A.C.5
Hurov, K.E.6
Gygi, S.P.7
Colaiacovo, M.P.8
Elledge, S.J.9
-
16
-
-
84881497258
-
Molecular architecture of human polycomb repressive complex 2
-
Ciferri C, Lander GC, Maiolica A, Herzog F, Aebersold R, Nogales E. 2012. Molecular architecture of human polycomb repressive complex 2. Elife 1: e00005.
-
(2012)
Elife
, vol.1
-
-
Ciferri, C.1
Lander, G.C.2
Maiolica, A.3
Herzog, F.4
Aebersold, R.5
Nogales, E.6
-
17
-
-
0037131523
-
Drosophila Enhancer of zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites
-
Czermin B, Melfi R, McCabe D, Seitz V, Imhof A, Pirrotta V. 2002. Drosophila Enhancer of zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites. Cell 111: 185–196.
-
(2002)
Cell
, vol.111
, pp. 185-196
-
-
Czermin, B.1
Melfi, R.2
McCabe, D.3
Seitz, V.4
Imhof, A.5
Pirrotta, V.6
-
18
-
-
33748199605
-
Smc5–Smc6 mediateDNAdouble-strand-break repair by promoting sister-chromatid recombination
-
De Piccoli G, Cortes-Ledesma F, Ira G, Torres-Rosell J, Uhle S, Farmer S, Hwang JY, Machin F, Ceschia A, McAleenan A, et al. 2006. Smc5–Smc6 mediateDNAdouble-strand-break repair by promoting sister-chromatid recombination. Nat Cell Biol 8: 1032–1034.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 1032-1034
-
-
De Piccoli, G.1
Cortes-Ledesma, F.2
Ira, G.3
Torres-Rosell, J.4
Uhle, S.5
Farmer, S.6
Hwang, J.Y.7
Machin, F.8
Ceschia, A.9
McAleenan, A.10
-
19
-
-
0022470895
-
Genetic and molecular analysis of fs(1)h, a maternal effect homeotic gene in Drosophila
-
Digan ME, Haynes SR, Mozer BA, Dawid IB, Forquignon F, Gans M. 1986. Genetic and molecular analysis of fs(1)h, a maternal effect homeotic gene in Drosophila. Dev Biol 114: 161–169.
-
(1986)
Dev Biol
, vol.114
, pp. 161-169
-
-
Digan, M.E.1
Haynes, S.R.2
Mozer, B.A.3
Dawid, I.B.4
Forquignon, F.5
Gans, M.6
-
20
-
-
84892888891
-
Cdyl, a new partner of the inactive X chromosome and potential reader of H3K27me3 and H3K9me2
-
Escamilla-Del-Arenal M, da Rocha ST, Spruijt CG, Masui O, Renaud O, Smits AH, Margueron R, Vermeulen M, Heard E. 2013. Cdyl, a new partner of the inactive X chromosome and potential reader of H3K27me3 and H3K9me2. Mol Cell Biol 33: 5005–5020.
-
(2013)
Mol Cell Biol
, vol.33
, pp. 5005-5020
-
-
Escamilla-Del-Arenal, M.1
Da Rocha, S.T.2
Spruijt, C.G.3
Masui, O.4
Renaud, O.5
Smits, A.H.6
Margueron, R.7
Vermeulen, M.8
Heard, E.9
-
21
-
-
84870665542
-
HP1a recruitment to promoters is independent of H3K9 methylation in Drosophila melanogaster
-
Figueiredo ML, Philip P, Stenberg P, Larsson J. 2012. HP1a recruitment to promoters is independent of H3K9 methylation in Drosophila melanogaster. PLoS Genet 8: e1003061.
-
(2012)
Plos Genet
, vol.8
-
-
Figueiredo, M.L.1
Philip, P.2
Stenberg, P.3
Larsson, J.4
-
23
-
-
0034785891
-
Reconstitution of a functional core polycomb repressive complex
-
Francis NJ, Saurin AJ, Shao Z, Kingston RE. 2001. Reconstitution of a functional core polycomb repressive complex. Mol Cell 8: 545–556.
-
(2001)
Mol Cell
, vol.8
, pp. 545-556
-
-
Francis, N.J.1
Saurin, A.J.2
Shao, Z.3
Kingston, R.E.4
-
24
-
-
0037077281
-
Identification of a novel non-structural maintenance of chromosomes (SMC) component of the SMC5–SMC6 complex involved in DNA repair
-
Fujioka Y, Kimata Y, Nomaguchi K, Watanabe K, Kohno K. 2002. Identification of a novel non-structural maintenance of chromosomes (SMC) component of the SMC5–SMC6 complex involved in DNA repair. J Biol Chem 277: 21585–21591.
-
(2002)
J Biol Chem
, vol.277
, pp. 21585-21591
-
-
Fujioka, Y.1
Kimata, Y.2
Nomaguchi, K.3
Watanabe, K.4
Kohno, K.5
-
25
-
-
67649206510
-
Drosophila dosage compensation: A complex voyage to the X chromosome
-
Gelbart ME, Kuroda MI. 2009. Drosophila dosage compensation: a complex voyage to the X chromosome. Development 136: 1399–1410.
-
(2009)
Development
, vol.136
, pp. 1399-1410
-
-
Gelbart, M.E.1
Kuroda, M.I.2
-
26
-
-
70349696541
-
Polycomb group protein gene silencing, non-coding RNA, stem cells, and cancer
-
Gieni RS, Hendzel MJ. 2009. Polycomb group protein gene silencing, non-coding RNA, stem cells, and cancer. Biochem Cell Biol 87: 711–746.
-
(2009)
Biochem Cell Biol
, vol.87
, pp. 711-746
-
-
Gieni, R.S.1
Hendzel, M.J.2
-
27
-
-
35748955512
-
Structural and functional analyses of methyl-lysine binding by the malignant brain tumour repeat protein Sex comb on midleg
-
Grimm C, de Ayala Alonso AG, Rybin V, Steuerwald U, Ly-Hartig N, Fischle W, Muller J, Muller CW. 2007. Structural and functional analyses of methyl-lysine binding by the malignant brain tumour repeat protein Sex comb on midleg. EMBO Rep 8: 1031–1037.
-
(2007)
EMBO Rep
, vol.8
, pp. 1031-1037
-
-
Grimm, C.1
De Ayala Alonso, A.G.2
Rybin, V.3
Steuerwald, U.4
Ly-Hartig, N.5
Fischle, W.6
Muller, J.7
Muller, C.W.8
-
28
-
-
67650443962
-
Molecular recognition of histone lysine methylation by the Polycomb group repressor dSfmbt
-
Grimm C, Matos R, Ly-Hartig N, Steuerwald U, Lindner D, Rybin V, Muller J, Muller CW. 2009. Molecular recognition of histone lysine methylation by the Polycomb group repressor dSfmbt. EMBO J 28: 1965–1977.
-
(2009)
EMBO J
, vol.28
, pp. 1965-1977
-
-
Grimm, C.1
Matos, R.2
Ly-Hartig, N.3
Steuerwald, U.4
Lindner, D.5
Rybin, V.6
Muller, J.7
Muller, C.W.8
-
30
-
-
84861365971
-
Polycomb repressive complex 2-dependent and -independent functions of Jarid2 in transcriptional regulation in Drosophila
-
Herz HM, Mohan M, Garrett AS, Miller C, Casto D, Zhang Y, Seidel C, Haug JS, Florens L, Washburn MP, et al. 2012. Polycomb repressive complex 2-dependent and -independent functions of Jarid2 in transcriptional regulation in Drosophila. Mol Cell Biol 32: 1683–1693.
-
(2012)
Mol Cell Biol
, vol.32
, pp. 1683-1693
-
-
Herz, H.M.1
Mohan, M.2
Garrett, A.S.3
Miller, C.4
Casto, D.5
Zhang, Y.6
Seidel, C.7
Haug, J.S.8
Florens, L.9
Washburn, M.P.10
-
31
-
-
84918546515
-
Histone acetyltransferase Enok regulates oocyte polarization by promoting expression of the actin nucleation factor spire
-
Huang F, Paulson A, Dutta A, Venkatesh S, Smolle M, Abmayr SM, Workman JL. 2014. Histone acetyltransferase Enok regulates oocyte polarization by promoting expression of the actin nucleation factor spire. Genes Dev 28: 2750–2763.
-
(2014)
Genes Dev
, vol.28
, pp. 2750-2763
-
-
Huang, F.1
Paulson, A.2
Dutta, A.3
Venkatesh, S.4
Smolle, M.5
Abmayr, S.M.6
Workman, J.L.7
-
32
-
-
0021670304
-
A gene that regulates the bithorax complex differentially in larval and adult cells of Drosophila
-
Ingham PW. 1984.A gene that regulates the bithorax complex differentially in larval and adult cells of Drosophila. Cell 37: 815–823.
-
(1984)
Cell
, vol.37
, pp. 815-823
-
-
Ingham, P.W.1
-
33
-
-
84884725454
-
SAM domain polymerization links subnuclear clustering of PRC1 to gene silencing
-
Isono K, Endo TA, Ku M, Yamada D, Suzuki R, Sharif J, Ishikura T, Toyoda T, Bernstein BE, Koseki H. 2013. SAM domain polymerization links subnuclear clustering of PRC1 to gene silencing. Dev Cell 26: 565–577.
-
(2013)
Dev Cell
, vol.26
, pp. 565-577
-
-
Isono, K.1
Endo, T.A.2
Ku, M.3
Yamada, D.4
Suzuki, R.5
Sharif, J.6
Ishikura, T.7
Toyoda, T.8
Bernstein, B.E.9
Koseki, H.10
-
34
-
-
0033564199
-
ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in theATP-dependent catalysis of chromatin assembly
-
Ito T, Levenstein ME, Fyodorov DV, Kutach AK, Kobayashi R, Kadonaga JT. 1999. ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in theATP-dependent catalysis of chromatin assembly. Genes Dev 13: 1529–1539.
-
(1999)
Genes Dev
, vol.13
, pp. 1529-1539
-
-
Ito, T.1
Levenstein, M.E.2
Fyodorov, D.V.3
Kutach, A.K.4
Kobayashi, R.5
Kadonaga, J.T.6
-
35
-
-
23744514308
-
The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription
-
Jang MK, Mochizuki K, Zhou M, Jeong HS, Brady JN, Ozato K. 2005. The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription. Mol Cell 19: 523–534.
-
(2005)
Mol Cell
, vol.19
, pp. 523-534
-
-
Jang, M.K.1
Mochizuki, K.2
Zhou, M.3
Jeong, H.S.4
Brady, J.N.5
Ozato, K.6
-
36
-
-
84901987800
-
Histone H2A monoubiquitination promotes histone H3 methylation in Polycomb repression
-
Kalb R, Latwiel S, Baymaz HI, Jansen PW, Muller CW, Vermeulen M, Muller J. 2014. Histone H2A monoubiquitination promotes histone H3 methylation in Polycomb repression. Nat Struct Mol Biol 21: 569–571.
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 569-571
-
-
Kalb, R.1
Latwiel, S.2
Baymaz, H.I.3
Jansen, P.W.4
Muller, C.W.5
Vermeulen, M.6
Muller, J.7
-
37
-
-
84925556593
-
BRD4 assists elongation of both coding and enhancer RNAs by interacting with acetylated histones
-
Kanno T, Kanno Y, LeRoy G, Campos E, Sun HW, Brooks SR, Vahedi G, Heightman TD, Garcia BA, Reinberg D, et al. 2014. BRD4 assists elongation of both coding and enhancer RNAs by interacting with acetylated histones. Nat Struct Mol Biol 21: 1047–1057.
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 1047-1057
-
-
Kanno, T.1
Kanno, Y.2
Leroy, G.3
Campos, E.4
Sun, H.W.5
Brooks, S.R.6
Vahedi, G.7
Heightman, T.D.8
Garcia, B.A.9
Reinberg, D.10
-
38
-
-
57449100870
-
Design and analysis of ChIP-seq experiments for DNA-binding proteins
-
Kharchenko PV, Tolstorukov MY, Park PJ. 2008. Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nat Biotechnol 26: 1351–1359.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1351-1359
-
-
Kharchenko, P.V.1
Tolstorukov, M.Y.2
Park, P.J.3
-
40
-
-
23044476138
-
Structural organization of a Sex-comb-on-midleg/polyhomeotic copolymer
-
Kim CA, Sawaya MR, Cascio D, Kim W, Bowie JU. 2005. Structural organization of a Sex-comb-on-midleg/polyhomeotic copolymer. J Biol Chem 280: 27769–27775.
-
(2005)
J Biol Chem
, vol.280
, pp. 27769-27775
-
-
Kim, C.A.1
Sawaya, M.R.2
Cascio, D.3
Kim, W.4
Bowie, J.U.5
-
41
-
-
66249121737
-
AEBP2 as a potential targeting protein for Polycomb Repression Complex PRC2
-
Kim H, Kang K, Kim J. 2009. AEBP2 as a potential targeting protein for Polycomb Repression Complex PRC2. Nucleic Acids Res 37: 2940–2950.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2940-2950
-
-
Kim, H.1
Kang, K.2
Kim, J.3
-
42
-
-
0036839671
-
Native and recombinant polycomb group complexes establish a selective block to template accessibility to repress transcription in vitro
-
King IF, Francis NJ, Kingston RE. 2002. Native and recombinant polycomb group complexes establish a selective block to template accessibility to repress transcription in vitro. Mol Cell Biol 22: 7919–7928.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 7919-7928
-
-
King, I.F.1
Francis, N.J.2
Kingston, R.E.3
-
43
-
-
33745151459
-
A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities
-
Klymenko T, Papp B, Fischle W, Kocher T, Schelder M, Fritsch C, Wild B, Wilm M, Muller J. 2006. A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities. Genes Dev 20: 1110–1122.
-
(2006)
Genes Dev
, vol.20
, pp. 1110-1122
-
-
Klymenko, T.1
Papp, B.2
Fischle, W.3
Kocher, T.4
Schelder, M.5
Fritsch, C.6
Wild, B.7
Wilm, M.8
Muller, J.9
-
44
-
-
52949106124
-
Stability and dynamics of polycomb target sites in Drosophila development
-
Kwong C, Adryan B, Bell I, Meadows L, Russell S, Manak JR, White R. 2008. Stability and dynamics of polycomb target sites in Drosophila development. PLoS Genet 4: e1000178.
-
(2008)
Plos Genet
, vol.4
-
-
Kwong, C.1
Adryan, B.2
Bell, I.3
Meadows, L.4
Russell, S.5
Manak, J.R.6
White, R.7
-
45
-
-
54349083294
-
dKDM2 couples histone H2A ubiquitylation to histone H3 demethylation during Polycomb group silencing
-
Lagarou A, Mohd-Sarip A, Moshkin YM, Chalkley GE, Bezstarosti K, Demmers JA, Verrijzer CP. 2008. dKDM2 couples histone H2A ubiquitylation to histone H3 demethylation during Polycomb group silencing. Genes Dev 22: 2799–2810.
-
(2008)
Genes Dev
, vol.22
, pp. 2799-2810
-
-
Lagarou, A.1
Mohd-Sarip, A.2
Moshkin, Y.M.3
Chalkley, G.E.4
Bezstarosti, K.5
Demmers, J.A.6
Verrijzer, C.P.7
-
46
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
47
-
-
0018240421
-
Agene complex controlling segmentation in Drosophila
-
Lewis EB. 1978.Agene complex controlling segmentation in Drosophila. Nature 276: 565–570.
-
(1978)
Nature
, vol.276
, pp. 565-570
-
-
Lewis, E.B.1
-
48
-
-
76749083433
-
Jarid2 and PRC2, partners in regulating gene expression
-
Li G, Margueron R, Ku M, Chambon P, Bernstein BE, Reinberg D. 2010. Jarid2 and PRC2, partners in regulating gene expression. Genes Dev 24: 368–380.
-
(2010)
Genes Dev
, vol.24
, pp. 368-380
-
-
Li, G.1
Margueron, R.2
Ku, M.3
Chambon, P.4
Bernstein, B.E.5
Reinberg, D.6
-
49
-
-
84863693535
-
LINT, a novel dL (3)mbt-containing complex, represses malignant brain tumour signature genes
-
Meier K, Mathieu EL, Finkernagel F, Reuter LM, Scharfe M, Doehlemann G, Jarek M, Brehm A. 2012. LINT, a novel dL (3)mbt-containing complex, represses malignant brain tumour signature genes. PLoS Genet 8: e1002676.
-
(2012)
Plos Genet
, vol.8
-
-
Meier, K.1
Mathieu, E.L.2
Finkernagel, F.3
Reuter, L.M.4
Scharfe, M.5
Doehlemann, G.6
Jarek, M.7
Brehm, A.8
-
50
-
-
0035146753
-
The iab-7 polycomb response element maps to a nucleosome-free region of chromatin and requires both GAGA and pleiohomeotic for silencing activity
-
Mishra RK, Mihaly J, Barges S, Spierer A, Karch F, Hagstrom K, Schweinsberg SE, Schedl P. 2001. The iab-7 polycomb response element maps to a nucleosome-free region of chromatin and requires both GAGA and pleiohomeotic for silencing activity. Mol Cell Biol 21: 1311–1318.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1311-1318
-
-
Mishra, R.K.1
Mihaly, J.2
Barges, S.3
Spierer, A.4
Karch, F.5
Hagstrom, K.6
Schweinsberg, S.E.7
Schedl, P.8
-
51
-
-
80052009948
-
Mechanisms for the inheritance of chromatin states
-
Moazed D. 2011. Mechanisms for the inheritance of chromatin states. Cell 146: 510–518.
-
(2011)
Cell
, vol.146
, pp. 510-518
-
-
Moazed, D.1
-
52
-
-
84892856196
-
The histone H3 lysine 9 methyltransferases G9a and GLP regulate polycomb repressive complex 2-mediated gene silencing
-
Mozzetta C, Pontis J, Fritsch L, Robin P, Portoso M, Proux C, Margueron R, Ait-Si-Ali S. 2014. The histone H3 lysine 9 methyltransferases G9a and GLP regulate polycomb repressive complex 2-mediated gene silencing. Mol Cell 53: 277–289.
-
(2014)
Mol Cell
, vol.53
, pp. 277-289
-
-
Mozzetta, C.1
Pontis, J.2
Fritsch, L.3
Robin, P.4
Portoso, M.5
Proux, C.6
Margueron, R.7
Ait-Si-Ali, S.8
-
53
-
-
18644383738
-
Histone methyltransferase activity of a Drosophila Polycomb group repressor complex
-
Muller J, Hart CM, Francis NJ, Vargas ML, Sengupta A, Wild B, Miller EL, O’Connor MB, Kingston RE, Simon JA. 2002. Histone methyltransferase activity of a Drosophila Polycomb group repressor complex. Cell 111: 197–208.
-
(2002)
Cell
, vol.111
, pp. 197-208
-
-
Muller, J.1
Hart, C.M.2
Francis, N.J.3
Vargas, M.L.4
Sengupta, A.5
Wild, B.6
Miller, E.L.7
O’Connor, M.B.8
Kingston, R.E.9
Simon, J.A.10
-
54
-
-
33646856965
-
Chromosomal distribution of PcG proteins during Drosophila development
-
Negre N, Hennetin J, Sun LV, Lavrov S, Bellis M, White KP, Cavalli G. 2006. Chromosomal distribution of PcG proteins during Drosophila development. PLoS Biol 4: e170.
-
(2006)
Plos Biol
, vol.4
-
-
Negre, N.1
Hennetin, J.2
Sun, L.V.3
Lavrov, S.4
Bellis, M.5
White, K.P.6
Cavalli, G.7
-
55
-
-
34648834735
-
Pcl-PRC2 is needed to generate high levels of H3-K27 trimethylation at Polycomb target genes
-
Nekrasov M, Klymenko T, Fraterman S, Papp B, Oktaba K, Kocher T, Cohen A, Stunnenberg HG, Wilm M, Muller J. 2007. Pcl-PRC2 is needed to generate high levels of H3-K27 trimethylation at Polycomb target genes. EMBO J 26: 4078–4088.
-
(2007)
EMBO J
, vol.26
, pp. 4078-4088
-
-
Nekrasov, M.1
Klymenko, T.2
Fraterman, S.3
Papp, B.4
Oktaba, K.5
Kocher, T.6
Cohen, A.7
Stunnenberg, H.G.8
Wilm, M.9
Muller, J.10
-
56
-
-
0035900741
-
Polycomblike PHD fingers mediate conserved interaction with enhancer of zeste protein
-
O’Connell S, Wang L, Robert S, Jones CA, Saint R, Jones RS. 2001. Polycomblike PHD fingers mediate conserved interaction with enhancer of zeste protein. J Biol Chem 276: 43065– 43073.
-
(2001)
J Biol Chem 276: 43065–
, pp. 43073
-
-
O’Connell, S.1
Wang, L.2
Robert, S.3
Jones, C.A.4
Saint, R.5
Jones, R.S.6
-
57
-
-
57049141484
-
Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila
-
Oktaba K, Gutierrez L, Gagneur J, Girardot C, Sengupta AK, Furlong EE, Muller J. 2008. Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila. Dev Cell 15: 877–889.
-
(2008)
Dev Cell
, vol.15
, pp. 877-889
-
-
Oktaba, K.1
Gutierrez, L.2
Gagneur, J.3
Girardot, C.4
Sengupta, A.K.5
Furlong, E.E.6
Muller, J.7
-
58
-
-
33746600716
-
Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins
-
Papp B, Muller J. 2006. Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins. Genes Dev 20: 2041–2054.
-
(2006)
Genes Dev
, vol.20
, pp. 2041-2054
-
-
Papp, B.1
Muller, J.2
-
59
-
-
0037129340
-
MOZ and MORF histone acetyltransferases interact with the Runtdomain transcription factor Runx2
-
Pelletier N, Champagne N, Stifani S, Yang XJ. 2002. MOZ and MORF histone acetyltransferases interact with the Runtdomain transcription factor Runx2. Oncogene 21: 2729–2740.
-
(2002)
Oncogene
, vol.21
, pp. 2729-2740
-
-
Pelletier, N.1
Champagne, N.2
Stifani, S.3
Yang, X.J.4
-
60
-
-
0030832045
-
A domain shared by the Polycomb group proteins Scm and ph mediates heterotypic and homotypic interactions
-
Peterson AJ, Kyba M, Bornemann D, Morgan K, Brock HW, Simon J. 1997. A domain shared by the Polycomb group proteins Scm and ph mediates heterotypic and homotypic interactions. Mol Cell Biol 17: 6683–6692.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 6683-6692
-
-
Peterson, A.J.1
Kyba, M.2
Bornemann, D.3
Morgan, K.4
Brock, H.W.5
Simon, J.6
-
61
-
-
3843136318
-
Requirement for sex comb on midleg protein interactions in Drosophila polycomb group repression
-
Peterson AJ, Mallin DR, Francis NJ, Ketel CS, Stamm J, Voeller RK, Kingston RE, Simon JA. 2004. Requirement for sex comb on midleg protein interactions in Drosophila polycomb group repression. Genetics 167: 1225–1239.
-
(2004)
Genetics
, vol.167
, pp. 1225-1239
-
-
Peterson, A.J.1
Mallin, D.R.2
Francis, N.J.3
Ketel, C.S.4
Stamm, J.5
Voeller, R.K.6
Kingston, R.E.7
Simon, J.A.8
-
62
-
-
33750335208
-
Specific recognition of ZNF217 and other zinc finger proteins at a surface groove of C-terminal binding proteins
-
Quinlan KG, Nardini M, Verger A, Francescato P, Yaswen P, Corda D, Bolognesi M, Crossley M. 2006. Specific recognition of ZNF217 and other zinc finger proteins at a surface groove of C-terminal binding proteins. Mol Cell Biol 26: 8159–8172.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 8159-8172
-
-
Quinlan, K.G.1
Nardini, M.2
Verger, A.3
Francescato, P.4
Yaswen, P.5
Corda, D.6
Bolognesi, M.7
Crossley, M.8
-
63
-
-
84901314672
-
CtBP and associated LSD1 are required for transcriptional activation by NeuroD1 in gastrointestinal endocrine cells
-
Ray SK, Li HJ, Metzger E, Schule R, Leiter AB. 2014. CtBP and associated LSD1 are required for transcriptional activation by NeuroD1 in gastrointestinal endocrine cells. Mol Cell Biol 34: 2308–2317.
-
(2014)
Mol Cell Biol
, vol.34
, pp. 2308-2317
-
-
Ray, S.K.1
Li, H.J.2
Metzger, E.3
Schule, R.4
Leiter, A.B.5
-
64
-
-
80052456164
-
The tumour suppressor L(3)mbt inhibits neuroepithelial proliferation and acts on insulator elements
-
Richter C, Oktaba K, Steinmann J, Muller J, Knoblich JA. 2011. The tumour suppressor L(3)mbt inhibits neuroepithelial proliferation and acts on insulator elements. Nat Cell Biol 13: 1029–1039.
-
(2011)
Nat Cell Biol
, vol.13
, pp. 1029-1039
-
-
Richter, C.1
Oktaba, K.2
Steinmann, J.3
Muller, J.4
Knoblich, J.A.5
-
65
-
-
50549091334
-
The polycomb repressive complex 2 is a potential target of SUMO modifications
-
Riising EM, Boggio R, Chiocca S, Helin K, Pasini D. 2008. The polycomb repressive complex 2 is a potential target of SUMO modifications. PLoS One 3: e2704.
-
(2008)
Plos One
, vol.3
-
-
Riising, E.M.1
Boggio, R.2
Chiocca, S.3
Helin, K.4
Pasini, D.5
-
66
-
-
84863337963
-
The growth-suppressive function of the polycomb group protein polyhomeotic is mediated by polymerization of its sterile α motif (SAM) domain
-
Robinson AK, Leal BZ, Chadwell LV, Wang R, Ilangovan U, Kaur Y, Junco SE, Schirf V, Osmulski PA, Gaczynska M, et al. 2012. The growth-suppressive function of the polycomb group protein polyhomeotic is mediated by polymerization of its sterile α motif (SAM) domain. J Biol Chem 287: 8702–8713.
-
(2012)
J Biol Chem
, vol.287
, pp. 8702-8713
-
-
Robinson, A.K.1
Leal, B.Z.2
Chadwell, L.V.3
Wang, R.4
Ilangovan, U.5
Kaur, Y.6
Junco, S.E.7
Schirf, V.8
Osmulski, P.A.9
Gaczynska, M.10
-
67
-
-
0035022705
-
Long-range repression by multiple polycomb group (PcG) proteins targeted by fusion to a defined DNA-binding domain in Drosophila
-
Roseman RR, Morgan K, Mallin DR, Roberson R, Parnell TJ, Bornemann DJ, Simon JA, Geyer PK. 2001. Long-range repression by multiple polycomb group (PcG) proteins targeted by fusion to a defined DNA-binding domain in Drosophila. Genetics 158: 291–307.
-
(2001)
Genetics
, vol.158
, pp. 291-307
-
-
Roseman, R.R.1
Morgan, K.2
Mallin, D.R.3
Roberson, R.4
Parnell, T.J.5
Bornemann, D.J.6
Simon, J.A.7
Geyer, P.K.8
-
68
-
-
2342505217
-
Differential histone H3 Lys-9 and Lys-27 methylation profiles on the X chromosome
-
Rougeulle C, Chaumeil J, Sarma K, Allis CD, Reinberg D, Avner P, Heard E. 2004. Differential histone H3 Lys-9 and Lys-27 methylation profiles on the X chromosome. Mol Cell Biol 24: 5475–5484.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 5475-5484
-
-
Rougeulle, C.1
Chaumeil, J.2
Sarma, K.3
Allis, C.D.4
Reinberg, D.5
Avner, P.6
Heard, E.7
-
69
-
-
34147162969
-
Heterochromatin formation in Drosophila is initiated through active removal of H3K4 methylation by the LSD1 homolog SU (VAR)3-3
-
Rudolph T, Yonezawa M, Lein S, Heidrich K, Kubicek S, Schafer C, Phalke S, Walther M, Schmidt A, Jenuwein T, et al. 2007. Heterochromatin formation in Drosophila is initiated through active removal of H3K4 methylation by the LSD1 homolog SU (VAR)3-3. Mol Cell 26: 103–115.
-
(2007)
Mol Cell
, vol.26
, pp. 103-115
-
-
Rudolph, T.1
Yonezawa, M.2
Lein, S.3
Heidrich, K.4
Kubicek, S.5
Schafer, C.6
Phalke, S.7
Walther, M.8
Schmidt, A.9
Jenuwein, T.10
-
70
-
-
0028860156
-
Characterization of a region of the X chromosome of Drosophila including multi sex combs (Mxc), a Polycomb group gene which also functions as a tumour suppressor
-
Santamaria P, Randsholt NB. 1995. Characterization of a region of the X chromosome of Drosophila including multi sex combs (mxc), a Polycomb group gene which also functions as a tumour suppressor. Mol Gen Genet 246: 282–290.
-
(1995)
Mol Gen Genet
, vol.246
, pp. 282-290
-
-
Santamaria, P.1
Randsholt, N.B.2
-
71
-
-
0035833718
-
A Drosophila Polycomb group complex includes zeste and dTAFII proteins
-
Saurin AJ, Shao Z, Erdjument-Bromage H, Tempst P, Kingston RE. 2001. A Drosophila Polycomb group complex includes zeste and dTAFII proteins. Nature 412: 655–660.
-
(2001)
Nature
, vol.412
, pp. 655-660
-
-
Saurin, A.J.1
Shao, Z.2
Erdjument-Bromage, H.3
Tempst, P.4
Kingston, R.E.5
-
72
-
-
77952429798
-
Histone H2A deubiquitinase activity of the Polycomb repressive complex PR-DUB
-
Scheuermann JC, de Ayala Alonso AG, Oktaba K, Ly-Hartig N, McGinty RK, Fraterman S, Wilm M, Muir TW, Muller J. 2010. Histone H2A deubiquitinase activity of the Polycomb repressive complex PR-DUB. Nature 465: 243–247.
-
(2010)
Nature
, vol.465
, pp. 243-247
-
-
Scheuermann, J.C.1
De Ayala Alonso, A.G.2
Oktaba, K.3
Ly-Hartig, N.4
McGinty, R.K.5
Fraterman, S.6
Wilm, M.7
Muir, T.W.8
Muller, J.9
-
73
-
-
58849088872
-
Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos
-
Schuettengruber B, Ganapathi M, Leblanc B, Portoso M, Jaschek R, Tolhuis B, van Lohuizen M, Tanay A, Cavalli G. 2009. Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos. PLoS Biol 7: e13.
-
(2009)
Plos Biol
, vol.7
-
-
Schuettengruber, B.1
Ganapathi, M.2
Leblanc, B.3
Portoso, M.4
Jaschek, R.5
Tolhuis, B.6
Van Lohuizen, M.7
Tanay, A.8
Cavalli, G.9
-
74
-
-
84888001513
-
A new world of Polycombs: Unexpected partnerships and emerging functions
-
Schwartz YB, Pirrotta V. 2013. A new world of Polycombs: unexpected partnerships and emerging functions. Nat Rev Genet 14: 853–864.
-
(2013)
Nat Rev Genet
, vol.14
, pp. 853-864
-
-
Schwartz, Y.B.1
Pirrotta, V.2
-
75
-
-
33745225872
-
Genome-wide analysis of Polycomb targets in Drosophila melanogaster
-
Schwartz YB, Kahn TG, Nix DA, Li XY, Bourgon R, Biggin M, Pirrotta V. 2006. Genome-wide analysis of Polycomb targets in Drosophila melanogaster. Nat Genet 38: 700–705.
-
(2006)
Nat Genet
, vol.38
, pp. 700-705
-
-
Schwartz, Y.B.1
Kahn, T.G.2
Nix, D.A.3
Li, X.Y.4
Bourgon, R.5
Biggin, M.6
Pirrotta, V.7
-
76
-
-
11144326866
-
Composition and architecture of the Schizosaccharomyces pombe Rad18 (Smc5–6) complex
-
Sergeant J, Taylor E, Palecek J, Fousteri M, Andrews EA, Sweeney S, Shinagawa H, Watts FZ, Lehmann AR. 2005. Composition and architecture of the Schizosaccharomyces pombe Rad18 (Smc5–6) complex. Mol Cell Biol 25: 172–184.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 172-184
-
-
Sergeant, J.1
Taylor, E.2
Palecek, J.3
Fousteri, M.4
Rews, E.A.5
Sweeney, S.6
Shinagawa, H.7
Watts, F.Z.8
Lehmann, A.R.9
-
77
-
-
37249009540
-
Drosophila G9a is a nonessential gene
-
Seum C, Bontron S, Reo E, Delattre M, Spierer P. 2007. Drosophila G9a is a nonessential gene. Genetics 177: 1955–1957.
-
(2007)
Genetics
, vol.177
, pp. 1955-1957
-
-
Seum, C.1
Bontron, S.2
Reo, E.3
Delattre, M.4
Spierer, P.5
-
78
-
-
0033538578
-
Stabilization of chromatin structure by PRC1, a Polycomb complex
-
Shao Z, Raible F, Mollaaghababa R, Guyon JR, Wu CT, Bender W, Kingston RE. 1999. Stabilization of chromatin structure by PRC1, a Polycomb complex. Cell 98: 37–46.
-
(1999)
Cell
, vol.98
, pp. 37-46
-
-
Shao, Z.1
Raible, F.2
Mollaaghababa, R.3
Guyon, J.R.4
Wu, C.T.5
Bender, W.6
Kingston, R.E.7
-
79
-
-
0024637850
-
The ash-1, ash-2 and trithorax genes of Drosophila melanogaster are functionally related
-
Shearn A. 1989. The ash-1, ash-2 and trithorax genes of Drosophila melanogaster are functionally related. Genetics 121: 517–525.
-
(1989)
Genetics
, vol.121
, pp. 517-525
-
-
Shearn, A.1
-
80
-
-
0242669199
-
Coordinated histone modifications mediated by a CtBP co-repressor complex
-
Shi Y, Sawada J, Sui G, Affar el B, Whetstine JR, Lan F, Ogawa H, Luke MP, Nakatani Y, Shi Y. 2003. Coordinated histone modifications mediated by a CtBP co-repressor complex. Nature 422: 735–738.
-
(2003)
Nature
, vol.422
, pp. 735-738
-
-
Shi, Y.1
Sawada, J.2
Sui, G.3
Affar El, B.4
Whetstine, J.R.5
Lan, F.6
Ogawa, H.7
Luke, M.P.8
Nakatani, Y.9
Shi, Y.10
-
81
-
-
0026503711
-
Ten different Polycomb group genes are required for spatial control of the abdA and AbdB homeotic products
-
Simon J, Chiang A, Bender W. 1992. Ten different Polycomb group genes are required for spatial control of the abdA and AbdB homeotic products. Development 114: 493–505.
-
(1992)
Development
, vol.114
, pp. 493-505
-
-
Simon, J.1
Chiang, A.2
Bender, W.3
-
82
-
-
34249066239
-
Functional cooperation between HP1 and DNMT1 mediates gene silencing
-
Smallwood A, Esteve PO, Pradhan S, Carey M. 2007. Functional cooperation between HP1 and DNMT1 mediates gene silencing. Genes Dev 21: 1169–1178.
-
(2007)
Genes Dev
, vol.21
, pp. 1169-1178
-
-
Smallwood, A.1
Esteve, P.O.2
Pradhan, S.3
Carey, M.4
-
83
-
-
79953220519
-
Small ubiquitin- like modifier (SUMO) conjugation impedes transcriptional silencing by the polycomb group repressor sex comb on midleg
-
Smith M, Mallin DR, Simon JA, Courey AJ. 2011. Small ubiquitin- like modifier (SUMO) conjugation impedes transcriptional silencing by the polycomb group repressor sex comb on midleg. J Biol Chem 286: 11391–11400.
-
(2011)
J Biol Chem
, vol.286
, pp. 11391-11400
-
-
Smith, M.1
Mallin, D.R.2
Simon, J.A.3
Courey, A.J.4
-
84
-
-
33750379420
-
Polycomb silencers control cell fate, development and cancer
-
Sparmann A, van Lohuizen M. 2006. Polycomb silencers control cell fate, development and cancer.Nat Rev Cancer 6: 846–856.
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 846-856
-
-
Sparmann, A.1
Van Lohuizen, M.2
-
85
-
-
7544224445
-
YY1 DNA binding and PcG recruitment requires CtBP
-
Srinivasan L, Atchison ML. 2004. YY1 DNA binding and PcG recruitment requires CtBP. Genes Dev 18: 2596–2601.
-
(2004)
Genes Dev
, vol.18
, pp. 2596-2601
-
-
Srinivasan, L.1
Atchison, M.L.2
-
86
-
-
79953803643
-
Roles of vertebrate Smc5 in sister chromatid cohesion and homologous recombinational repair
-
Stephan AK, Kliszczak M, Dodson H, Cooley C, Morrison CG. 2011. Roles of vertebrate Smc5 in sister chromatid cohesion and homologous recombinational repair. Mol Cell Biol 31: 1369–1381.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 1369-1381
-
-
Stephan, A.K.1
Kliszczak, M.2
Dodson, H.3
Cooley, C.4
Morrison, C.G.5
-
87
-
-
79955016832
-
Polycomb purification by in vivo biotinylation tagging reveals cohesin and Trithorax group proteins as interaction partners
-
Strubbe G, Popp C, Schmidt A, Pauli A, Ringrose L, Beisel C, Paro R. 2011. Polycomb purification by in vivo biotinylation tagging reveals cohesin and Trithorax group proteins as interaction partners. Proc Natl Acad Sci 108: 5572–5577.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 5572-5577
-
-
Strubbe, G.1
Popp, C.2
Schmidt, A.3
Pauli, A.4
Ringrose, L.5
Beisel, C.6
Paro, R.7
-
88
-
-
0019369234
-
A gene product required for correct initiation of segmental determination in Drosophila
-
Struhl G. 1981. A gene product required for correct initiation of segmental determination in Drosophila. Nature 293: 36–41.
-
(1981)
Nature
, vol.293
, pp. 36-41
-
-
Struhl, G.1
-
89
-
-
33746385994
-
Glial and neuronal functions of the Drosophila homolog of the human SWI/SNF gene ATR-X (DATR-X) and the jing zinc-finger gene specify the lateral positioning of longitudinal glia and axons
-
Sun X, Morozova T, Sonnenfeld M. 2006. Glial and neuronal functions of the Drosophila homolog of the human SWI/SNF gene ATR-X (DATR-X) and the jing zinc-finger gene specify the lateral positioning of longitudinal glia and axons. Genetics 173: 1397–1415.
-
(2006)
Genetics
, vol.173
, pp. 1397-1415
-
-
Sun, X.1
Morozova, T.2
Sonnenfeld, M.3
-
90
-
-
0037099413
-
G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis
-
Tachibana M, Sugimoto K, Nozaki M, Ueda J, Ohta T, Ohki M, Fukuda M, Takeda N, Niida H, Kato H, et al. 2002. G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis. Genes Dev 16: 1779–1791.
-
(2002)
Genes Dev
, vol.16
, pp. 1779-1791
-
-
Tachibana, M.1
Sugimoto, K.2
Nozaki, M.3
Ueda, J.4
Ohta, T.5
Ohki, M.6
Fukuda, M.7
Takeda, N.8
Niida, H.9
Kato, H.10
-
91
-
-
20144388930
-
Histone methyltransferases G9a and GLP form heteromeric complexes and are both crucial for methylation of euchromatin at H3-K9
-
Tachibana M, Ueda J, Fukuda M, Takeda N, Ohta T, Iwanari H, Sakihama T, Kodama T, Hamakubo T, Shinkai Y. 2005. Histone methyltransferases G9a and GLP form heteromeric complexes and are both crucial for methylation of euchromatin at H3-K9. Genes Dev 19: 815–826.
-
(2005)
Genes Dev
, vol.19
, pp. 815-826
-
-
Tachibana, M.1
Ueda, J.2
Fukuda, M.3
Takeda, N.4
Ohta, T.5
Iwanari, H.6
Sakihama, T.7
Kodama, T.8
Hamakubo, T.9
Shinkai, Y.10
-
92
-
-
84857367297
-
RYBP– PRC1 complexes mediate H2A ubiquitylation at polycomb target sites independently of PRC2 and H3K27me3
-
Tavares L, Dimitrova E, Oxley D, Webster J, Poot R, Demmers J, Bezstarosti K, Taylor S, Ura H, Koide H, et al. 2012. RYBP– PRC1 complexes mediate H2A ubiquitylation at polycomb target sites independently of PRC2 and H3K27me3. Cell 148: 664–678.
-
(2012)
Cell
, vol.148
, pp. 664-678
-
-
Tavares, L.1
Dimitrova, E.2
Oxley, D.3
Webster, J.4
Poot, R.5
Demmers, J.6
Bezstarosti, K.7
Taylor, S.8
Ura, H.9
Koide, H.10
-
93
-
-
0037404421
-
A 1-megadalton ESC/E(Z) complex from Drosophila that contains polycomblike and RPD3
-
Tie F, Prasad-Sinha J, Birve A, Rasmuson-Lestander A, Harte PJ. 2003. A 1-megadalton ESC/E(Z) complex from Drosophila that contains polycomblike and RPD3. Mol Cell Biol 23: 3352–3362.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 3352-3362
-
-
Tie, F.1
Prasad-Sinha, J.2
Birve, A.3
Rasmuson-Lestander, A.4
Harte, P.J.5
-
94
-
-
70350031643
-
CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing
-
Tie F, Banerjee R, Stratton CA, Prasad-Sinha J, Stepanik V, Zlobin A, Diaz MO, Scacheri PC, Harte PJ. 2009. CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing. Development 136: 3131–3141.
-
(2009)
Development
, vol.136
, pp. 3131-3141
-
-
Tie, F.1
Banerjee, R.2
Stratton, C.A.3
Prasad-Sinha, J.4
Stepanik, V.5
Zlobin, A.6
Diaz, M.O.7
Scacheri, P.C.8
Harte, P.J.9
-
95
-
-
84894066697
-
Trithorax monomethylates histone H3K4 and interacts directly with CBP to promote H3K27 acetylation and antagonize Polycomb silencing
-
Tie F, Banerjee R, Saiakhova AR, Howard B, Monteith KE, Scacheri PC, Cosgrove MS, Harte PJ. 2014. Trithorax monomethylates histone H3K4 and interacts directly with CBP to promote H3K27 acetylation and antagonize Polycomb silencing. Development 141: 1129–1139.
-
(2014)
Development
, vol.141
, pp. 1129-1139
-
-
Tie, F.1
Banerjee, R.2
Saiakhova, A.R.3
Howard, B.4
Monteith, K.E.5
Scacheri, P.C.6
Cosgrove, M.S.7
Harte, P.J.8
-
96
-
-
33745258986
-
Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster
-
Tolhuis B, de Wit E, Muijrers I, Teunissen H, Talhout W, van Steensel B, van Lohuizen M. 2006. Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster. Nat Genet 38: 694–699.
-
(2006)
Nat Genet
, vol.38
, pp. 694-699
-
-
Tolhuis, B.1
De Wit, E.2
Muijrers, I.3
Teunissen, H.4
Talhout, W.5
Van Steensel, B.6
Van Lohuizen, M.7
-
97
-
-
71549124331
-
Moz and retinoic acid coordinately regulate H3K9 acetylation, Hox gene expression, and segment identity
-
Voss AK, Collin C, Dixon MP, Thomas T. 2009. Moz and retinoic acid coordinately regulate H3K9 acetylation, Hox gene expression, and segment identity. Dev Cell 17: 674–686.
-
(2009)
Dev Cell
, vol.17
, pp. 674-686
-
-
Voss, A.K.1
Collin, C.2
Dixon, M.P.3
Thomas, T.4
-
98
-
-
69449102464
-
Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
-
Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, Zhao K. 2009. Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell 138: 1019–1031.
-
(2009)
Cell
, vol.138
, pp. 1019-1031
-
-
Wang, Z.1
Zang, C.2
Cui, K.3
Schones, D.E.4
Barski, A.5
Peng, W.6
Zhao, K.7
-
99
-
-
77952611697
-
Comparative analysis of chromatin binding by sex comb on midleg (SCM) and other polycomb group repressors at a Drosophila Hox gene
-
Wang L, Jahren N, Miller EL, Ketel CS, Mallin DR, Simon JA. 2010. Comparative analysis of chromatin binding by sex comb on midleg (SCM) and other polycomb group repressors at a Drosophila Hox gene. Mol Cell Biol 30: 2584–2593.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 2584-2593
-
-
Wang, L.1
Jahren, N.2
Miller, E.L.3
Ketel, C.S.4
Mallin, D.R.5
Simon, J.A.6
-
100
-
-
84873569148
-
Chromatin proteins captured by ChIP-mass spectrometry are linked to dosage compensation in Drosophila
-
Wang CI, Alekseyenko AA, LeRoy G, Elia AE, Gorchakov AA, Britton LM, Elledge SJ, Kharchenko PV, Garcia BA, Kuroda MI. 2013. Chromatin proteins captured by ChIP-mass spectrometry are linked to dosage compensation in Drosophila. Nat Struct Mol Biol 20: 202–209.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 202-209
-
-
Wang, C.I.1
Alekseyenko, A.A.2
Leroy, G.3
Elia, A.E.4
Gorchakov, A.A.5
Britton, L.M.6
Elledge, S.J.7
Kharchenko, P.V.8
Garcia, B.A.9
Kuroda, M.I.10
-
101
-
-
84865292901
-
Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation
-
Yuan W, Wu T, Fu H, Dai C, Wu H, Liu N, Li X, Xu M, Zhang Z, Niu T, et al. 2012. Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation. Science 337: 971–975.
-
(2012)
Science
, vol.337
, pp. 971-975
-
-
Yuan, W.1
Wu, T.2
Fu, H.3
Dai, C.4
Wu, H.5
Liu, N.6
Li, X.7
Xu, M.8
Zhang, Z.9
Niu, T.10
-
102
-
-
53849146020
-
Model- based analysis of ChIP-seq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, et al. 2008. Model- based analysis of ChIP-seq (MACS). Genome Biol 9: R137.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
103
-
-
84876255033
-
SFMBT1 functions with LSD1 to regulate expression of canonical histone genes and chromatin-related factors
-
Zhang J, Bonasio R, Strino F, Kluger Y, Holloway JK, Modzelewski AJ, Cohen PE, Reinberg D. 2013. SFMBT1 functions with LSD1 to regulate expression of canonical histone genes and chromatin-related factors. Genes Dev 27: 749–766.
-
(2013)
Genes Dev
, vol.27
, pp. 749-766
-
-
Zhang, J.1
Bonasio, R.2
Strino, F.3
Kluger, Y.4
Holloway, J.K.5
Modzelewski, A.J.6
Cohen, P.E.7
Reinberg, D.8
-
104
-
-
33748319353
-
Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae
-
Zybailov B, Mosley AL, Sardiu ME, Coleman MK, Florens L, Washburn MP. 2006. Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. J Proteome Res 5: 2339–2347.
-
(2006)
J Proteome Res
, vol.5
, pp. 2339-2347
-
-
Zybailov, B.1
Mosley, A.L.2
Sardiu, M.E.3
Coleman, M.K.4
Florens, L.5
Washburn, M.P.6
|