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Volumn 2015, Issue , 2015, Pages 21.30.1-21.30.32

BioTAP-XL: Cross-linking/tandem affinity purification to study DNA targets, RNA, and protein components of chromatin-associated complexes

Author keywords

Chromatin; Formaldehyde cross linking; LC MS MS; Nextgeneration sequencing

Indexed keywords

DNA; PROTEIN; RNA; CHROMATIN;

EID: 84949228956     PISSN: 19343639     EISSN: 19343647     Source Type: Journal    
DOI: 10.1002/0471142727.mb2130s109     Document Type: Article
Times cited : (14)

References (14)
  • 1
    • 84894302147 scopus 로고    scopus 로고
    • Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification
    • Alekseyenko, A.A., Gorchakov, A.A., Kharchenko, P.V., and Kuroda, M.I. 2014a. Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification. Proc. Natl. Acad. Sci. U.S.A. 111:2488-2493.
    • (2014) Proc. Natl. Acad. Sci. U.S.A. , vol.111 , pp. 2488-2493
    • Alekseyenko, A.A.1    Gorchakov, A.A.2    Kharchenko, P.V.3    Kuroda, M.I.4
  • 2
    • 84903771634 scopus 로고    scopus 로고
    • Heterochromatin-associated interactions of Drosophila HP1a with dADD1, HIPP1, and repetitive RNAs
    • Alekseyenko, A.A., Gorchakov, A.A., Zee, B.M., Fuchs, S.M., Kharchenko, P.V., and Kuroda, M.I. 2014b. Heterochromatin-associated interactions of Drosophila HP1a with dADD1, HIPP1, and repetitive RNAs. Genes Dev. 28:1445-1460.
    • (2014) Genes Dev. , vol.28 , pp. 1445-1460
    • Alekseyenko, A.A.1    Gorchakov, A.A.2    Zee, B.M.3    Fuchs, S.M.4    Kharchenko, P.V.5    Kuroda, M.I.6
  • 3
    • 84863011309 scopus 로고    scopus 로고
    • PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes
    • Gao, Z., Zhang, J., Bonasio, R., Strino, F., Sawai, A., Parisi, F., Kluger, Y., and Reinberg, D. 2012. PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes. Mol. Cell 45:344-356.
    • (2012) Mol. Cell , vol.45 , pp. 344-356
    • Gao, Z.1    Zhang, J.2    Bonasio, R.3    Strino, F.4    Sawai, A.5    Parisi, F.6    Kluger, Y.7    Reinberg, D.8
  • 4
    • 67649854477 scopus 로고    scopus 로고
    • Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs
    • Granneman, S., Kudla, G., Petfalski, E., and Tollervey, D. 2009. Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs. Proc. Natl. Acad. Sci. U.S.A. 106:9613-9618.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 9613-9618
    • Granneman, S.1    Kudla, G.2    Petfalski, E.3    Tollervey, D.4
  • 5
    • 33644670152 scopus 로고    scopus 로고
    • An integrated mass spectrometry-based proteomic approach: Quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network
    • Guerrero, C., Tagwerker, C., Kaiser, P., and Huang, L. 2006. An integrated mass spectrometry-based proteomic approach: Quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network. Mol. Cell Proteom. 5:366-378.
    • (2006) Mol. Cell Proteom. , vol.5 , pp. 366-378
    • Guerrero, C.1    Tagwerker, C.2    Kaiser, P.3    Huang, L.4
  • 6
    • 66149100528 scopus 로고    scopus 로고
    • A novel proteomics approach for the discovery of chromatinassociated protein networks
    • Lambert, J.P., Mitchell, L., Rudner, A., Baetz, K., and Figeys, D. 2009. A novel proteomics approach for the discovery of chromatinassociated protein networks. Mol. Cell Proteom. 8: 870-882.
    • (2009) Mol. Cell Proteom. , vol.8 , pp. 870-882
    • Lambert, J.P.1    Mitchell, L.2    Rudner, A.3    Baetz, K.4    Figeys, D.5
  • 9
    • 0032828715 scopus 로고    scopus 로고
    • A generic protein purification method for protein complex characterization and proteome exploration
    • Rigaut, G., Shevchenko, A., Rutz, B., Wilm, M., Mann, M., and Seraphin, B. 1999. A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 17:1030-1032.
    • (1999) Nat. Biotechnol. , vol.17 , pp. 1030-1032
    • Rigaut, G.1    Shevchenko, A.2    Rutz, B.3    Wilm, M.4    Mann, M.5    Seraphin, B.6
  • 11
    • 33645703441 scopus 로고    scopus 로고
    • A tandem affinity tag for twostep purification under fully denaturing conditions: Application in ubiquitin profiling and protein complex identification combined with in vivo cross-linking
    • Tagwerker, C., Flick, K., Cui, M., Guerrero, C., Dou, Y., Auer, B., Baldi, P., Huang, L., and Kaiser, P. 2006. A tandem affinity tag for twostep purification under fully denaturing conditions: Application in ubiquitin profiling and protein complex identification combined with in vivo cross-linking. Mol. Cell Proteom. 5:737-748.
    • (2006) Mol. Cell Proteom. , vol.5 , pp. 737-748
    • Tagwerker, C.1    Flick, K.2    Cui, M.3    Guerrero, C.4    Dou, Y.5    Auer, B.6    Baldi, P.7    Huang, L.8    Kaiser, P.9
  • 12
    • 38049146018 scopus 로고    scopus 로고
    • Protein characterization of Saccharomyces cerevisiae RNA polymerase II after in vivo cross-linking
    • Tardiff, D.F., Abruzzi, K.C., and Rosbash, M. 2007. Protein characterization of Saccharomyces cerevisiae RNA polymerase II after in vivo cross-linking. Proc. Natl. Acad. Sci. U.S.A. 104:19948-19953.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 19948-19953
    • Tardiff, D.F.1    Abruzzi, K.C.2    Rosbash, M.3
  • 13
    • 33845698104 scopus 로고    scopus 로고
    • P[acman]: A BAC transgenic platform for targeted insertion of large DNA fragments in D
    • Venken, K.J., He, Y., Hoskins, R.A., and Bellen, H.J. 2006. P[acman]: A BAC transgenic platform for targeted insertion of large DNA fragments in D. melanogaster. Science 314:1747-1751.
    • (2006) melanogaster. Science , vol.314 , pp. 1747-1751
    • Venken, K.J.1    He, Y.2    Hoskins, R.A.3    Bellen, H.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.