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Volumn , Issue , 2014, Pages 83-103

Mobile catabolic genetic elements in pseudomonads

Author keywords

DNA rearrangements; Horizontal gene transfer; Integrative and conjugative elements; Microbial degradation of recalcitrant compounds; Mobile genetic elements; Plasmids; Pseudomonads; Transposons

Indexed keywords


EID: 84930883382     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-4-431-54520-0_5     Document Type: Chapter
Times cited : (6)

References (96)
  • 1
    • 20444417458 scopus 로고    scopus 로고
    • The evolution of IncP catabolic plasmids
    • Dennis JJ. (2005). The evolution of IncP catabolic plasmids. Curr Opin Biotechnol 16:291-298
    • (2005) Curr Opin Biotechnol , vol.16 , pp. 291-298
    • Dennis, J.J.1
  • 2
    • 4344678209 scopus 로고    scopus 로고
    • Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4
    • Dennis JJ, Zylstra GJ. (2004). Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4. J Mol Biol 341:753-768
    • (2004) J Mol Biol , vol.341 , pp. 753-768
    • Dennis, J.J.1    Zylstra, G.J.2
  • 3
    • 38549154927 scopus 로고    scopus 로고
    • Fitness drift of an atrazine-degrading population under atrazine selection pressure
    • Devers M, Rouard N, Martin-Laurent F. (2008). Fitness drift of an atrazine-degrading population under atrazine selection pressure. Environ Microbiol 10:676-684
    • (2008) Environ Microbiol , vol.10 , pp. 676-684
    • Devers, M.1    Rouard, N.2    Martin-Laurent, F.3
  • 4
    • 0015781618 scopus 로고
    • Transmissible plasmid coding early enzymes of naphthalene oxidation in pseudomonas putida
    • Dunn N, Gunsalus IC. (1973). Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida . J Bacteriol 114:974-979
    • (1973) J Bacteriol , vol.114 , pp. 974-979
    • Dunn, N.1    Gunsalus, I.C.2
  • 5
    • 0023405209 scopus 로고
    • The sequence encoding the 43-kilodalton trfA protein is required for effi cient replication or maintenance of minimal RK2 replicons in Pseudomonas aeruginosa
    • Durland RH, Helinski DR. (1987). The sequence encoding the 43-kilodalton trfA protein is required for effi cient replication or maintenance of minimal RK2 replicons in Pseudomonas aeruginosa. Plasmid 18:164-169
    • (1987) Plasmid , vol.18 , pp. 164-169
    • Durland, R.H.1    Helinski, D.R.2
  • 6
    • 23944506044 scopus 로고    scopus 로고
    • Mobile genetic elements: The agents of open source evolution
    • Frost LS, Leplae R, Summers AO, Toussaint A. (2005). Mobile genetic elements: the agents of open source evolution. Nat Rev Micro 3:722-732
    • (2005) Nat Rev Micro , vol.3 , pp. 722-732
    • Frost, L.S.1    Leplae, R.2    Summers, A.O.3    Toussaint, A.4
  • 8
    • 0030811133 scopus 로고    scopus 로고
    • Transcriptional control of the multiple catabolic pathways encoded on the TOL plasmid pWW53 of Pseudomonas putida MT53
    • Gallegos MT, Williams PA, Ramos JL. (1997). Transcriptional control of the multiple catabolic pathways encoded on the TOL plasmid pWW53 of Pseudomonas putida MT53. J Bacteriol 179:5024-5029
    • (1997) J Bacteriol , vol.179 , pp. 5024-5029
    • Gallegos, M.T.1    Williams, P.A.2    Ramos, J.L.3
  • 9
    • 0036718559 scopus 로고    scopus 로고
    • Site-specific recombination system encoded by toluene catabolic transposon Tn 4651
    • Genka H, Nagata Y, Tsuda M. (2002). Site-specific recombination system encoded by toluene catabolic transposon Tn 4651 . J Bacteriol 184:4757-4766
    • (2002) J Bacteriol , vol.184 , pp. 4757-4766
    • Genka, H.1    Nagata, Y.2    Tsuda, M.3
  • 10
    • 0036933239 scopus 로고    scopus 로고
    • Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida
    • Greated A, Lambertsen L, Williams PA, Thomas CM. (2002). Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida . Environ Microbiol 4:856-871
    • (2002) Environ Microbiol , vol.4 , pp. 856-871
    • Greated, A.1    Lambertsen, L.2    Williams, P.A.3    Thomas, C.M.4
  • 11
    • 85158006363 scopus 로고    scopus 로고
    • The movement of Tn 3 -like elements: Transposition and cointegrate resolution
    • Craig NL, Craigie R, Gellert M, Lambowitz AM (eds ASM, Washington DC
    • Grindley NDF. (2002). The movement of Tn 3 -like elements: transposition and cointegrate resolution. In: Craig NL, Craigie R, Gellert M, Lambowitz AM (eds) Mobile DNA II. ASM, Washington, DC, pp 272-302
    • (2002) Mobile DNA II , pp. 272-302
    • Grindley, N.D.F.1
  • 12
    • 0018271615 scopus 로고
    • IncP2 group of Pseudomonas, a class of uniquely large plasmids
    • Hansen JB, Olsen RH. (1978). IncP2 group of Pseudomonas, a class of uniquely large plasmids. Nature 274:715-717
    • (1978) Nature , vol.274 , pp. 715-717
    • Hansen, J.B.1    Olsen, R.H.2
  • 13
    • 70449127276 scopus 로고    scopus 로고
    • Conjugal transfer and mobilization capacity of the completely sequenced naphthalene plasmid pNAH20 from multiplasmid strain Pseudomonas fl uorescens PC20
    • Heinaru E, Vedler E, Jutkina J, Aava M, Heinaru A. (2009). Conjugal transfer and mobilization capacity of the completely sequenced naphthalene plasmid pNAH20 from multiplasmid strain Pseudomonas fl uorescens PC20. FEMS Microbiol Ecol 70:563-574
    • (2009) Fems Microbiol Ecol , vol.70 , pp. 563-574
    • Heinaru, E.1    Vedler, E.2    Jutkina, J.3    Aava, M.4    Heinaru, A.5
  • 14
    • 84866919992 scopus 로고    scopus 로고
    • Plasmids foster diversifi cation and adaptation of bacterial populations in soil
    • Heuer H, Smalla K. (2012). Plasmids foster diversifi cation and adaptation of bacterial populations in soil. FEMS Microbiol Rev 36:1083-1104
    • (2012) Fems Microbiol Rev , vol.36 , pp. 1083-1104
    • Heuer, H.1    Smalla, K.2
  • 15
    • 84875657482 scopus 로고    scopus 로고
    • The phn Island: A new genomic island encoding catabolism of polynuclear aromatic hydrocarbons
    • Hickey WJ, Chen S, Zhao J. (2012). The phn Island: a new genomic island encoding catabolism of polynuclear aromatic hydrocarbons. Front Microbiol 3:125
    • (2012) Front Microbiol , vol.3 , pp. 125
    • Hickey, W.J.1    Chen, S.2    Zhao, J.3
  • 16
    • 0026554427 scopus 로고
    • Isolation and screening of plasmids from the epilithon which mobilize recombinant plasmid pD10
    • Hill KE, Weightman AJ, Fry JC. (1992). Isolation and screening of plasmids from the epilithon which mobilize recombinant plasmid pD10. Appl Environ Microbiol 58:1292-1300
    • (1992) Appl Environ Microbiol , vol.58 , pp. 1292-1300
    • Hill, K.E.1    Weightman, A.J.2    Fry, J.C.3
  • 17
    • 0032464363 scopus 로고    scopus 로고
    • Expression of the transposase gene tnpA of Tn 4652 is positively affected by integration host factor
    • Hõrak R, Kivisaar M. (1998). Expression of the transposase gene tnpA of Tn 4652 is positively affected by integration host factor. J Bacteriol 180:2822-2829
    • (1998) J Bacteriol , vol.180 , pp. 2822-2829
    • Hõrak, R.1    Kivisaar, M.2
  • 18
    • 0345062344 scopus 로고    scopus 로고
    • Regulation of the transposase of Tn 4652 by the transposon-encoded protein TnpC
    • Hõrak R, Kivisaar M. (1999). Regulation of the transposase of Tn 4652 by the transposon-encoded protein TnpC. J Bacteriol 181:6312-6318
    • (1999) J Bacteriol , vol.181 , pp. 6312-6318
    • Hõrak, R.1    Kivisaar, M.2
  • 19
    • 0034868292 scopus 로고    scopus 로고
    • Involvement of s in starvation-induced transposition of pseudomonas putida transposon tn 4652
    • Ilves H, Hõrak R, Kivisaar M. (2001). Involvement of S in starvation-induced transposition of Pseudomonas putida transposon Tn 4652 . J Bacteriol 183:5445-5448
    • (2001) J Bacteriol , vol.183 , pp. 5445-5448
    • Ilves, H.1    Hõrak, R.2    Kivisaar, M.3
  • 20
    • 1642442680 scopus 로고    scopus 로고
    • IHF is the limiting host factor in transposition of Pseudomonas putida transposon Tn 4652 in stationary phase
    • Ilves H, Hõrak R, Teras R, Kivisaar M. (2004). IHF is the limiting host factor in transposition of Pseudomonas putida transposon Tn 4652 in stationary phase. Mol Microbiol 51:1773-1785
    • (2004) Mol Microbiol , vol.51 , pp. 1773-1785
    • Ilves, H.1    Hõrak, R.2    Teras, R.3    Kivisaar, M.4
  • 21
    • 84880641770 scopus 로고    scopus 로고
    • Inhibitory effect of pseudomonas putida nitrogen-related phosphotransferase system on conjugative transfer of incp-9 plasmid from escherichia coli
    • Inoue K, Miyazaki R, Ohtsubo Y, Nagata Y, Tsuda M. (2013). Inhibitory effect of Pseudomonas putida nitrogen-related phosphotransferase system on conjugative transfer of IncP-9 plasmid from Escherichia coli . FEMS Microbiol Lett 345:102-109
    • (2013) Fems Microbiol Lett , vol.345 , pp. 102-109
    • Inoue, K.1    Miyazaki, R.2    Ohtsubo, Y.3    Nagata, Y.4    Tsuda, M.5
  • 23
    • 0020046839 scopus 로고
    • Excision and integration of degradative pathway genes from TOL plasmid pWW0
    • Jeenes DJ, Williams PA. (1982). Excision and integration of degradative pathway genes from TOL plasmid pWW0. J Bacteriol 150:188-194
    • (1982) J Bacteriol , vol.150 , pp. 188-194
    • Jeenes, D.J.1    Williams, P.A.2
  • 25
    • 0022375254 scopus 로고
    • Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWW0 and pWW53
    • Keil H, Keil S, Pickup RW, Williams PA. (1985a). Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWW0 and pWW53. J Bacteriol 164:887-895
    • (1985) J Bacteriol , vol.164 , pp. 887-895
    • Keil, H.1    Keil, S.2    Pickup, R.W.3    Williams, P.A.4
  • 26
    • 0021813884 scopus 로고
    • TOL plasmid pWW15 contains two nonhomologous, independently regulated catechol 2,3-oxygenase genes
    • Keil H, Lebens MR, Williams PA. (1985b). TOL plasmid pWW15 contains two nonhomologous, independently regulated catechol 2,3-oxygenase genes. J Bacteriol 163:248-255
    • (1985) J Bacteriol , vol.163 , pp. 248-255
    • Keil, H.1    Lebens, M.R.2    Williams, P.A.3
  • 27
    • 0023195872 scopus 로고
    • Molecular analysis of regulatory and structural xyl genes of the TOL plasmid p WW53-4
    • Keil H, Keil S, Williams PA. (1987). Molecular analysis of regulatory and structural xyl genes of the TOL plasmid p WW53-4. J Gen Microbiol 133:1149-1158
    • (1987) J Gen Microbiol , vol.133 , pp. 1149-1158
    • Keil, H.1    Keil, S.2    Williams, P.A.3
  • 29
    • 84930910174 scopus 로고    scopus 로고
    • Transposition and other mutational processes in Pseudomonas
    • Ramos JL (ed Kluwer Academic/Plenum, New York
    • Kivisaar M. (2004). Transposition and other mutational processes in Pseudomonas . In: Ramos JL (ed) Pseudomonas, vol 1. Kluwer Academic/Plenum, New York, pp 261-316
    • (2004) Pseudomonas , vol.1 , pp. 261-316
    • Kivisaar, M.1
  • 30
    • 33947108811 scopus 로고    scopus 로고
    • Diversity of the abundant pKLC102/PAGI-2 family of genomic islands in Pseudomonas aeruginosa
    • Klockgether J, Wurdemann D, Reva O, Wiehlmann L, Tummler B. (2007). Diversity of the abundant pKLC102/PAGI-2 family of genomic islands in Pseudomonas aeruginosa . J Bacteriol 189:2443-2459
    • (2007) J Bacteriol , vol.189 , pp. 2443-2459
    • Klockgether, J.1    Wurdemann, D.2    Reva, O.3    Wiehlmann, L.4    Tummler, B.5
  • 32
    • 0019506775 scopus 로고
    • Isolation and characterization of spontaneously occurring TOL plasmid mutants of Pseudomonas putida HS1
    • Kunz DA, Chapman PJ. (1981). Isolation and characterization of spontaneously occurring TOL plasmid mutants of Pseudomonas putida HS1. J Bacteriol 146:952-964
    • (1981) J Bacteriol , vol.146 , pp. 952-964
    • Kunz, D.A.1    Chapman, P.J.2
  • 33
    • 0020358205 scopus 로고
    • Physical mapping of tol plasmids pwwo and pnd2 and various r plasmid-tol derivatives from pseudomonas spp
    • Lehrbach PR, Ward J, Meulien P, Broda P. (1982). Physical mapping of TOL plasmids pWWO and pND2 and various R plasmid-TOL derivatives from Pseudomonas spp. J Bacteriol 152:1280-1283
    • (1982) J Bacteriol , vol.152 , pp. 1280-1283
    • Lehrbach, P.R.1    Ward, J.2    Meulien, P.3    Broda, P.4
  • 34
    • 3042837371 scopus 로고    scopus 로고
    • Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6
    • Li W, Shi J, Wang X, Han Y, Tong W, Ma L, Liu B, Cai B. (2004). Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6. Gene 336:231-240
    • (2004) Gene , vol.336 , pp. 231-240
    • Li, W.1    Shi, J.2    Wang, X.3    Han, Y.4    Tong, W.5    Ma, L.6    Liu, B.7    Cai, B.8
  • 36
    • 0037423746 scopus 로고    scopus 로고
    • Indicates its mosaicity and the presence of large catabolic transposon Tn 4676. Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pcar1 in pseudomonas resinovorans strain ca10
    • Maeda K, Nojiri H, Shintani M, Yoshida T, Habe H, Omori T. (2003). Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn 4676. J Mol Biol 326:21-33
    • (2003) J Mol Biol , vol.326 , pp. 21-33
    • Maeda, K.1    Nojiri, H.2    Shintani, M.3    Yoshida, T.4    Habe, H.5    Omori, T.6
  • 37
    • 0034811709 scopus 로고    scopus 로고
    • Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP
    • Martinez B, Tomkins J, Wackett LP, Wing R, Sadowsky MJ. (2001). Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. J Bacteriol 183:5684-5697
    • (2001) J Bacteriol , vol.183 , pp. 5684-5697
    • Martinez, B.1    Tomkins, J.2    Wackett, L.P.3    Wing, R.4    Sadowsky, M.J.5
  • 38
    • 0141844394 scopus 로고    scopus 로고
    • Tn 5053 family transposons are res site hunters sensing plasmidal res sites occupied by cognate resolvases
    • Minakhina S, Kholodii G, Mindlin S, Yurieva O, Nikiforov V. (1999). Tn 5053 family transposons are res site hunters sensing plasmidal res sites occupied by cognate resolvases. Mol Microbiol 33:1059-1068
    • (1999) Mol Microbiol , vol.33 , pp. 1059-1068
    • Minakhina, S.1    Kholodii, G.2    Mindlin, S.3    Yurieva, O.4    Nikiforov, V.5
  • 39
    • 33751017401 scopus 로고    scopus 로고
    • Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation
    • Miyazaki R, Sato Y, Ito M, Ohtsubo Y, Nagata Y, Tsuda M. (2006). Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation. Appl Environ Microbiol 72:6923-6933
    • (2006) Appl Environ Microbiol , vol.72 , pp. 6923-6933
    • Miyazaki, R.1    Sato, Y.2    Ito, M.3    Ohtsubo, Y.4    Nagata, Y.5    Tsuda, M.6
  • 40
    • 52649135569 scopus 로고    scopus 로고
    • Characterization of the traD operon of naphthalene-catabolic plasmid NAH7: A host-range modifi er in conjugative transfer
    • Miyazaki R, Ohtsubo Y, Nagata Y, Tsuda M. (2008). Characterization of the traD operon of naphthalene-catabolic plasmid NAH7: a host-range modifi er in conjugative transfer. J Bacteriol 190:6281-6289
    • (2008) J Bacteriol , vol.190 , pp. 6281-6289
    • Miyazaki, R.1    Ohtsubo, Y.2    Nagata, Y.3    Tsuda, M.4
  • 42
    • 0036933237 scopus 로고    scopus 로고
    • Travels of a Pseudomonas, from Japan around the world
    • Nakazawa T. (2002). Travels of a Pseudomonas, from Japan around the world. Environ Microbiol 4:782-786
    • (2002) Environ Microbiol , vol.4 , pp. 782-786
    • Nakazawa, T.1
  • 43
    • 0034019603 scopus 로고    scopus 로고
    • A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715
    • Nishi A, Tominaga K, Furukawa K. (2000). A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715. J Bacteriol 182:1949-1955
    • (2000) J Bacteriol , vol.182 , pp. 1949-1955
    • Nishi, A.1    Tominaga, K.2    Furukawa, K.3
  • 44
    • 2142659318 scopus 로고    scopus 로고
    • Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity
    • Nojiri H, Shintani M, Omori T. (2004). Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity. Appl Microbiol Biotechnol 64:154-174
    • (2004) Appl Microbiol Biotechnol , vol.64 , pp. 154-174
    • Nojiri, H.1    Shintani, M.2    Omori, T.3
  • 46
    • 84866309711 scopus 로고    scopus 로고
    • Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. Strain KKS102, which are located on an integrative and conjugative element
    • Ohtsubo Y, Ishibashi Y, Naganawa H, Hirokawa S, Atobe S, Nagata Y, Tsuda M. (2012a). Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element. J Bacteriol 194:4237-4248
    • (2012) J Bacteriol , vol.194 , pp. 4237-4248
    • Ohtsubo, Y.1    Ishibashi, Y.2    Naganawa, H.3    Hirokawa, S.4    Atobe, S.5    Nagata, Y.6    Tsuda, M.7
  • 47
    • 84870696700 scopus 로고    scopus 로고
    • Complete genome sequence of acidovorax sp kks102, a polychlorinated biphenyl-degrading strain
    • Ohtsubo Y, Maruyama F, Mitsui H, Nagata Y, Tsuda M. (2012b). Complete genome sequence of Acidovorax sp. KKS102, a polychlorinated biphenyl-degrading strain. J Bacteriol 194: 6970-6971
    • (2012) J Bacteriol , vol.194 , pp. 6970-6971
    • Ohtsubo, Y.1    Maruyama, F.2    Mitsui, H.3    Nagata, Y.4    Tsuda, M.5
  • 48
    • 33846796432 scopus 로고    scopus 로고
    • Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches
    • Ono A, Miyazaki R, Sota M, Ohtsubo Y, Nagata Y, Tsuda M. (2007). Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches. Appl Microbiol Biotechnol 74:501-510
    • (2007) Appl Microbiol Biotechnol , vol.74 , pp. 501-510
    • Ono, A.1    Miyazaki, R.2    Sota, M.3    Ohtsubo, Y.4    Nagata, Y.5    Tsuda, M.6
  • 49
    • 79958153463 scopus 로고    scopus 로고
    • Embedded elements in the incp1-β plasmids r772 and r906 can be mobilized and can serve as a source of diverse and novel elements
    • Petrovski S, Stanisich VA. (2011). Embedded elements in the IncP1-β plasmids R772 and R906 can be mobilized and can serve as a source of diverse and novel elements. Microbiology 157: 1714-1725
    • (2011) Microbiology , vol.157 , pp. 1714-1725
    • Petrovski, S.1    Stanisich, V.A.2
  • 50
    • 33845924185 scopus 로고    scopus 로고
    • Interstrain transfer of the large pathogenicity island (PAPI-1) of Pseudomonas aeruginosa
    • Qiu X, Gurkar AU, Lory S. (2006). Interstrain transfer of the large pathogenicity island (PAPI-1) of Pseudomonas aeruginosa . Proc Natl Acad Sci USA 103:19830-19835
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 19830-19835
    • Qiu, X.1    Gurkar, A.U.2    Lory, S.3
  • 51
    • 66749140560 scopus 로고    scopus 로고
    • Challenging a paradigm: The role of DNA homology in tyrosine recombinase reactions
    • Rajeev L, Malanowska K, Gardner JF. (2009). Challenging a paradigm: the role of DNA homology in tyrosine recombinase reactions. Microbiol Mol Biol Rev 73:300-309
    • (2009) Microbiol Mol Biol Rev , vol.73 , pp. 300-309
    • Rajeev, L.1    Malanowska, K.2    Gardner, J.F.3
  • 52
    • 0030860391 scopus 로고    scopus 로고
    • Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators
    • Ramos JL, Marqués S, Timmis KN. (1997). Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators. Annu Rev Microbiol 51:341-373
    • (1997) Annu Rev Microbiol , vol.51 , pp. 341-373
    • Ramos, J.L.1    Marqués, S.2    Timmis, K.N.3
  • 53
    • 0031745938 scopus 로고    scopus 로고
    • Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms
    • Ravatn R, Zehnder AJ, van Der Meer JR. (1998). Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms. Appl Environ Microbiol 64:2126-2132
    • (1998) Appl Environ Microbiol , vol.64 , pp. 2126-2132
    • Ravatn, R.1    Zehnder, A.J.2    Van Der Meer, J.R.3
  • 54
    • 11144261097 scopus 로고    scopus 로고
    • Transcriptional regulation of the toluene catabolic pathways
    • Ramos JL (ed Kluwer Academic/Plenum, New York
    • Riuz R, Aranda-Olmedo MI, Domíniquez-Cuevas P, Ramos-Gonzalez MI, Marqués S. (2004). Transcriptional regulation of the toluene catabolic pathways. In: Ramos JL (ed) Pseudomonas, vol 2. Kluwer Academic/Plenum, New York, pp 509-537
    • (2004) Pseudomonas , vol.2 , pp. 509-537
    • Riuz, R.1    Aranda-Olmedo, M.I.2    Domíniquez-Cuevas, P.3    Ramos-Gonzalez, M.I.4    Marqués, S.5
  • 56
    • 72849128938 scopus 로고    scopus 로고
    • Novel Tn 4371 -ICE like element in Ralstonia pickettii and genome mining for comparative elements
    • Ryan MP, Pembroke JT, Adley CC. (2009). Novel Tn 4371 -ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol 9:242
    • (2009) BMC Microbiol , vol.9 , pp. 242
    • Ryan, M.P.1    Pembroke, J.T.2    Adley, C.C.3
  • 58
    • 84871838444 scopus 로고    scopus 로고
    • Inferring the evolutionary history of IncP-1 plasmids despite incongruence among backbone gene trees
    • Sen D, Brown CJ, Top EM, Sullivan J. (2013). Inferring the evolutionary history of IncP-1 plasmids despite incongruence among backbone gene trees. Mol Biol Evol 30:154-166
    • (2013) Mol Biol Evol , vol.30 , pp. 154-166
    • Sen, D.1    Brown, C.J.2    Top, E.M.3    Sullivan, J.4
  • 59
    • 0033941481 scopus 로고    scopus 로고
    • Molecular diversity of plasmids bearing genes that encode toluene and xylene metabolism in Pseudomonas strains isolated from different contaminated sites in Belarus
    • Sentchilo VS, Perebituk AN, Zehnder AJ, van Der Meer JR. (2000). Molecular diversity of plasmids bearing genes that encode toluene and xylene metabolism in Pseudomonas strains isolated from different contaminated sites in Belarus. Appl Environ Microbiol 66:2842-2852
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2842-2852
    • Sentchilo, V.S.1    Perebituk, A.N.2    Zehnder, A.J.3    Van Der Meer, J.R.4
  • 61
    • 0024074764 scopus 로고
    • Physical and functional mapping of two cointegrate plasmids derived from rp4 and tol plasmid pdk1
    • Shaw LE, Williams PA. (1988). Physical and functional mapping of two cointegrate plasmids derived from RP4 and TOL plasmid pDK1. J Gen Microbiol 134:2463-2474
    • (1988) J Gen Microbiol , vol.134 , pp. 2463-2474
    • Shaw, L.E.1    Williams, P.A.2
  • 62
    • 84931323365 scopus 로고    scopus 로고
    • Mobile genetic elements (MGEs) carrying catabolic genes
    • Malik A, Grohmann E, Alves M (eds Springer, Netherlands
    • Shintani M, Nojiri H. (2013). Mobile genetic elements (MGEs) carrying catabolic genes. In: Malik A, Grohmann E, Alves M (eds) Management of microbial resources in the environment. Springer, Netherlands, pp 167-214
    • (2013) Management of Microbial Resources in the Environment , pp. 167-214
    • Shintani, M.1    Nojiri, H.2
  • 64
    • 0036249529 scopus 로고    scopus 로고
    • Characterization of a class ii defective transposon carrying two haloacetate dehalogenase genes from delftia acidovorans plasmid puo1
    • Sota M, Endo M, Nitta K, Kawasaki H, Tsuda M. (2002). Characterization of a class II defective transposon carrying two haloacetate dehalogenase genes from Delftia acidovorans plasmid pUO1. Appl Environ Microbiol 68:2307-2315
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2307-2315
    • Sota, M.1    Endo, M.2    Nitta, K.3    Kawasaki, H.4    Tsuda, M.5
  • 65
    • 0242575001 scopus 로고    scopus 로고
    • Structure of haloacetate-catabolic incp-1β plasmid puo1 and genetic mobility of its residing haloacetate-catabolic transposon
    • Sota M, Kawasaki H, Tsuda M. (2003). Structure of haloacetate-catabolic IncP-1β plasmid pUO1 and genetic mobility of its residing haloacetate-catabolic transposon. J Bacteriol 185:6741-6745
    • (2003) J Bacteriol , vol.185 , pp. 6741-6745
    • Sota, M.1    Kawasaki, H.2    Tsuda, M.3
  • 67
    • 33744718828 scopus 로고    scopus 로고
    • Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn 4655 suggests catabolic gene spread by a tyrosine recombinase
    • Sota M, Yano H, Ono A, Miyazaki R, Ishii H, Genka H, Top EM, Tsuda M. (2006b). Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn 4655 suggests catabolic gene spread by a tyrosine recombinase. J Bacteriol 188:4057-4067
    • (2006) J Bacteriol , vol.188 , pp. 4057-4067
    • Sota, M.1    Yano, H.2    Ono, A.3    Miyazaki, R.4    Ishii, H.5    Genka, H.6    Top, E.M.7    Tsuda, M.8
  • 68
    • 34247847841 scopus 로고    scopus 로고
    • Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids
    • Sota M, Tsuda M, Yano H, Suzuki H, Forney LJ, Top EM. (2007). Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids. J Bacteriol 189:3091-3098
    • (2007) J Bacteriol , vol.189 , pp. 3091-3098
    • Sota, M.1    Tsuda, M.2    Yano, H.3    Suzuki, H.4    Forney, L.J.5    Top, E.M.6
  • 69
    • 84892783340 scopus 로고    scopus 로고
    • Bacterial class II catabolic transposons
    • Yoshida Y, Aoki M (eds Nova Science, New York
    • Sota M, Yano H, Tsuda M. (2008). Bacterial class II catabolic transposons. In: Yoshida Y, Aoki M (eds) DNA transposable elements research. Nova Science, New York, pp 23-67
    • (2008) DNA Transposable Elements Research , pp. 23-67
    • Sota, M.1    Yano, H.2    Tsuda, M.3
  • 70
    • 0027404658 scopus 로고
    • Identification of a catabolic transposon, tn 4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in alcaligenes eutrophus a5
    • Springael D, Kreps S, Mergeay M. (1993). Identification of a catabolic transposon, Tn 4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5. J Bacteriol 175:1674-1681
    • (1993) J Bacteriol , vol.175 , pp. 1674-1681
    • Springael, D.1    Kreps, S.2    Mergeay, M.3
  • 71
    • 72649090171 scopus 로고    scopus 로고
    • Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis
    • Suenaga H, Koyama Y, Miyakoshi M, Miyazaki R, Yano H, Sota M, Ohtsubo Y, Tsuda M, Miyazaki K. (2009). Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis. ISME J 3:1335-1348
    • (2009) ISME J , vol.3 , pp. 1335-1348
    • Suenaga, H.1    Koyama, Y.2    Miyakoshi, M.3    Miyazaki, R.4    Yano, H.5    Sota, M.6    Ohtsubo, Y.7    Tsuda, M.8    Miyazaki, K.9
  • 72
    • 0033954732 scopus 로고    scopus 로고
    • Transcription from fusion promoters generated during transposition of transposon tn 4652 is positively affected by integration host factor in pseudomonas putida
    • Teras R, Hõrak R, Kivisaar M. (2000). Transcription from fusion promoters generated during transposition of transposon Tn 4652 is positively affected by integration host factor in Pseudomonas putida . J Bacteriol 182:589-598
    • (2000) J Bacteriol , vol.182 , pp. 589-598
    • Teras, R.1    Hõrak, R.2    Kivisaar, M.3
  • 73
    • 65649091321 scopus 로고    scopus 로고
    • Fis negatively affects binding of Tn 4652 transposase by out-competing IHF from the left end of Tn 4652
    • Teras R, Jakovleva J, Kivisaar M. (2009). Fis negatively affects binding of Tn 4652 transposase by out-competing IHF from the left end of Tn 4652 . Microbiology 155:1203-1214
    • (2009) Microbiology , vol.155 , pp. 1203-1214
    • Teras, R.1    Jakovleva, J.2    Kivisaar, M.3
  • 74
    • 32644485706 scopus 로고    scopus 로고
    • Plasmids of the genus Pseudomonas
    • Ramos JL (ed Kluwer Academic/Plenum, New York
    • Thomas CM, Haines A. (2004). Plasmids of the genus Pseudomonas . In: Ramos JL (ed) Pseudomonas, vol 1. Kluwer Academic/Plenum, New York, pp 197-231
    • (2004) Pseudomonas , vol.1 , pp. 197-231
    • Thomas, C.M.1    Haines, A.2
  • 75
    • 23944475626 scopus 로고    scopus 로고
    • Mechanisms of, and barriers to, horizontal gene transfer between bacteria
    • Thomas CM, Nielsen KM. (2005). Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat Rev Micro 3:711-721
    • (2005) Nat Rev Micro , vol.3 , pp. 711-721
    • Thomas, C.M.1    Nielsen, K.M.2
  • 76
    • 79960969621 scopus 로고    scopus 로고
    • Combinatorial events of insertion sequences and ICE in Gramnegative bacteria
    • Toleman MA, Walsh TR. (2011). Combinatorial events of insertion sequences and ICE in Gramnegative bacteria. FEMS Microbiol Rev 35:912-935
    • (2011) Fems Microbiol Rev , vol.35 , pp. 912-935
    • Toleman, M.A.1    Walsh, T.R.2
  • 78
    • 0038820052 scopus 로고    scopus 로고
    • The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds
    • Top EM, Springael D. (2003). The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds. Curr Opin Biotechnol 14:262-269
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 262-269
    • Top, E.M.1    Springael, D.2
  • 79
    • 0038018390 scopus 로고    scopus 로고
    • The biphenyl-and 4-chlorobiphenyl-catabolic transposon tn 4371, a member of a new family of genomic islands related to incp and ti plasmids
    • Toussaint A, Merlin C, Monchy S, Benotmane MA, Leplae R, Mergeay M, Springael D. (2003). The biphenyl-and 4-chlorobiphenyl-catabolic transposon Tn 4371, a member of a new family of genomic islands related to IncP and Ti plasmids. Appl Environ Microbiol 69:4837-4845
    • (2003) Appl Environ Microbiol , vol.69 , pp. 4837-4845
    • Toussaint, A.1    Merlin, C.2    Monchy, S.3    Benotmane, M.A.4    Leplae, R.5    Mergeay, M.6    Springael, D.7
  • 80
    • 3042826882 scopus 로고    scopus 로고
    • Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways
    • Trefault N, De La Iglesia R, Molina AM, Manzano M, Ledger T, Pérez-Pantoja D, Sánchez MA, Stuardo M, González B. (2004). Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways. Environ Microbiol 6:655-668
    • (2004) Environ Microbiol , vol.6 , pp. 655-668
    • Trefault, N.1    De La Iglesia, R.2    Molina, A.M.3    Manzano, M.4    Ledger, T.5    Pérez-Pantoja, D.6    Sánchez, M.A.7    Stuardo, M.8    González, B.9
  • 81
    • 0035688599 scopus 로고    scopus 로고
    • Identification and characterization of Tn 4656, a novel class II transposon carrying a set of toluene-degrading genes from TOL plasmid pWW53
    • Tsuda M, Genka H. (2001). Identification and characterization of Tn 4656, a novel class II transposon carrying a set of toluene-degrading genes from TOL plasmid pWW53. J Bacteriol 183:6215-6224
    • (2001) J Bacteriol , vol.183 , pp. 6215-6224
    • Tsuda, M.1    Genka, H.2
  • 82
    • 0023504678 scopus 로고
    • Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0
    • Tsuda M, Iino T. (1987). Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0. Mol Gen Genet 210:270-276
    • (1987) Mol Gen Genet , vol.210 , pp. 270-276
    • Tsuda, M.1    Iino, T.2
  • 83
    • 0024046404 scopus 로고
    • Identification and characterization of tn 4653, a transposon covering the toluene transposon tn 4651 on tol plasmid pww0
    • Tsuda M, Iino T. (1988). Identification and characterization of Tn 4653, a transposon covering the toluene transposon Tn 4651 on TOL plasmid pWW0. Mol Gen Genet 213:72-77
    • (1988) Mol Gen Genet , vol.213 , pp. 72-77
    • Tsuda, M.1    Iino, T.2
  • 84
    • 0025073507 scopus 로고
    • Naphthalene degrading genes on plasmid NAH7 are on a defective transposon
    • Tsuda M, Iino T. (1990). Naphthalene degrading genes on plasmid NAH7 are on a defective transposon. Mol Gen Genet 223:33-39
    • (1990) Mol Gen Genet , vol.223 , pp. 33-39
    • Tsuda, M.1    Iino, T.2
  • 85
    • 0024574036 scopus 로고
    • Toluene transposons Tn 4651 and Tn 4653 are class II transposons
    • Tsuda M, Minegishi K, Iino T. (1989). Toluene transposons Tn 4651 and Tn 4653 are class II transposons. J Bacteriol 171:1386-1393
    • (1989) J Bacteriol , vol.171 , pp. 1386-1393
    • Tsuda, M.1    Minegishi, K.2    Iino, T.3
  • 87
    • 0038504021 scopus 로고    scopus 로고
    • Genomic islands and the evolution of catabolic pathways in bacteria
    • van Der Meer JR, Sentchilo V. (2003). Genomic islands and the evolution of catabolic pathways in bacteria. Curr Opin Biotechnol 14:248-254
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 248-254
    • Van Der Meer, J.R.1    Sentchilo, V.2
  • 89
    • 33645802381 scopus 로고    scopus 로고
    • Self-control in DNA sitespecific recombination mediated by the tyrosine recombinase TnpI
    • Vanhooff V, Galloy C, Agaisse H, Lereclus D, Revet B, Hallet B. (2006). Self-control in DNA sitespecific recombination mediated by the tyrosine recombinase TnpI. Mol Microbiol 60: 617-629
    • (2006) Mol Microbiol , vol.60 , pp. 617-629
    • Vanhooff, V.1    Galloy, C.2    Agaisse, H.3    Lereclus, D.4    Revet, B.5    Hallet, B.6
  • 90
    • 0016197816 scopus 로고
    • Metabolism of benzoate and the methylbenzoates by pseudomonas putida (arvilla) mt-2: Evidence for the existence of a tol plasmid
    • Williams PA, Murray K. (1974). Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid. J Bacteriol 120:416-423
    • (1974) J Bacteriol , vol.120 , pp. 416-423
    • Williams, P.A.1    Murray, K.2
  • 91
    • 0017276364 scopus 로고
    • Ubiquity of plasmids in coding for toluene and xylene metabolism in soil bacteria: Evidence for the existence of new tol plasmids
    • Williams PA, Worsey MJ. (1976). Ubiquity of plasmids in coding for toluene and xylene metabolism in soil bacteria: evidence for the existence of new TOL plasmids. J Bacteriol 125:818-828
    • (1976) J Bacteriol , vol.125 , pp. 818-828
    • Williams, P.A.1    Worsey, M.J.2
  • 92
    • 2942543627 scopus 로고    scopus 로고
    • Genomics of catabolic plasmids
    • Ramos JL (ed Kluwer Academic/Plenum, New York
    • Williams PA, Rheinallt MJ, Zylstra GJ. (2004). Genomics of catabolic plasmids. In: Ramos JL (ed) Pseudomonas, vol 1. Kluwer Academic/Plenum, New York
    • (2004) Pseudomonas , vol.1
    • Williams, P.A.1    Rheinallt, M.J.2    Zylstra, G.J.3
  • 93
    • 84857934383 scopus 로고    scopus 로고
    • Roles of long and short replication initiation proteins in the fate of IncP-1 plasmids
    • Yano H, Deckert GE, Rogers LM, Top EM. (2012). Roles of long and short replication initiation proteins in the fate of IncP-1 plasmids. J Bacteriol 194:1533-1543
    • (2012) J Bacteriol , vol.194 , pp. 1533-1543
    • Yano, H.1    Deckert, G.E.2    Rogers, L.M.3    Top, E.M.4
  • 94
    • 34247358195 scopus 로고    scopus 로고
    • Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of incp-7 tol plasmid pww53 and related mobile genetic elements
    • Yano H, Garruto CE, Sota M, Ohtsubo Y, Nagata Y, Zylstra GJ, Williams PA, Tsuda M. (2007). Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements. J Mol Biol 369:11-26
    • (2007) J Mol Biol , vol.369 , pp. 11-26
    • Yano, H.1    Garruto, C.E.2    Sota, M.3    Ohtsubo, Y.4    Nagata, Y.5    Zylstra, G.J.6    Williams, P.A.7    Tsuda, M.8
  • 95
    • 77956548642 scopus 로고    scopus 로고
    • Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids
    • Yano H, Miyakoshi M, Ohshima K, Tabata M, Nagata Y, Hattori M, Tsuda M. (2010). Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids. J Bacteriol 192:4337-4347
    • (2010) J Bacteriol , vol.192 , pp. 4337-4347
    • Yano, H.1    Miyakoshi, M.2    Ohshima, K.3    Tabata, M.4    Nagata, Y.5    Hattori, M.6    Tsuda, M.7
  • 96
    • 84871952203 scopus 로고    scopus 로고
    • Cointegrate-resolution of toluene-catabolic transposon Tn 4651: Determination of crossover site and the segment required for full resolution activity
    • Yano H, Genka H, Ohtsubo Y, Nagata Y, Top EM, Tsuda M. (2013). Cointegrate-resolution of toluene-catabolic transposon Tn 4651: determination of crossover site and the segment required for full resolution activity. Plasmid 69:24-35
    • (2013) Plasmid , vol.69 , pp. 24-35
    • Yano, H.1    Genka, H.2    Ohtsubo, Y.3    Nagata, Y.4    Top, E.M.5    Tsuda, M.6


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