메뉴 건너뛰기




Volumn 364, Issue 1527, 2009, Pages 2275-2289

Conjugative plasmids: Vessels of the communal gene pool

Author keywords

Communal gene pool; Conjugative plasmids; Horizontal gene transfer; Prokaryotic evolution; Supergenome

Indexed keywords

ADAPTATION; COMPARATIVE STUDY; EVOLUTIONARY BIOLOGY; GENE TRANSFER; PLASMID; PROKARYOTE; TAXONOMY;

EID: 67651033667     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2009.0037     Document Type: Review
Times cited : (379)

References (91)
  • 2
    • 27744571676 scopus 로고    scopus 로고
    • Transcriptional organization of the temperature-sensitive transfer system from the IncHI1 plasmid R27
    • doi:10.1099/mic.0.28256-0
    • Alonso, G., Baptista, K., Ngo, T. & Taylor, D. E. 2005 Transcriptional organization of the temperature-sensitive transfer system from the IncHI1 plasmid R27. Microbiology 151, 3563-3573. (doi:10.1099/mic.0.28256-0)
    • (2005) Microbiology , vol.151 , pp. 3563-3573
    • Alonso, G.1    Baptista, K.2    Ngo, T.3    Taylor, D.E.4
  • 3
    • 0032923349 scopus 로고    scopus 로고
    • Transient transcriptional activation of the Incl1 plasmid anti-restriction gene (ardA) and SOS inhibition gene (psiB) early in conjugating recipient bacteria
    • doi:10.1046/j.1365-2958.1999.01153.x
    • Althorpe, N. J., Chilley, P. M., Thomas, A. T., Brammar, W. J. & Wilkins, B. M. 1999 Transient transcriptional activation of the Incl1 plasmid anti-restriction gene (ardA) and SOS inhibition gene (psiB) early in conjugating recipient bacteria. Mol. Microbiol. 31, 133-142. (doi:10.1046/j.1365-2958.1999.01153.x)
    • (1999) Mol. Microbiol , vol.31 , pp. 133-142
    • Althorpe, N.J.1    Chilley, P.M.2    Thomas, A.T.3    Brammar, W.J.4    Wilkins, B.M.5
  • 4
    • 33846127794 scopus 로고    scopus 로고
    • Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat
    • doi:10.1128/AEM.01971-06
    • Bahl, M. I., Hansen, L. H., Licht, T. R. & Sørensen, S. J. 2007a Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat. Appl. Environ. Microbiol. 73, 341-343. (doi:10.1128/AEM.01971-06)
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 341-343
    • Bahl, M.I.1    Hansen, L.H.2    Licht, T.R.3    Sørensen, S.J.4
  • 5
    • 33845632041 scopus 로고    scopus 로고
    • Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations
    • doi:10.1111/j.1574-6968.2006.00536.x
    • Bahl, M. I., Hansen, L. H. & Sørensen, S. J. 2007b Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations. FEMS Microbiol. Lett. 266, 250-256. (doi:10.1111/j.1574-6968.2006.00536.x)
    • (2007) FEMS Microbiol. Lett , vol.266 , pp. 250-256
    • Bahl, M.I.1    Hansen, L.H.2    Sørensen, S.J.3
  • 6
    • 34249872978 scopus 로고    scopus 로고
    • Bahl, M. I., Hansen, L. H., Goesmann, A. & Sorensen, S. R. J. 2007c The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established [alpha], [beta] and [delta] sub-groups. Plasmid 58, 31-43.(doi:10.1016/j.plasmid.2006.11.007)
    • Bahl, M. I., Hansen, L. H., Goesmann, A. & Sorensen, S. R. J. 2007c The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established [alpha], [beta] and [delta] sub-groups. Plasmid 58, 31-43.(doi:10.1016/j.plasmid.2006.11.007)
  • 7
    • 2942666034 scopus 로고    scopus 로고
    • Opinion-From pieces to patterns: Evolutionary engineering in bacterial pathogens
    • doi:10.1038/nrmicro909
    • Baquero, F. 2004 Opinion-From pieces to patterns: evolutionary engineering in bacterial pathogens. Nat. Rev. Microbiol. 2, 510-518. (doi:10.1038/nrmicro909)
    • (2004) Nat. Rev. Microbiol , vol.2 , pp. 510-518
    • Baquero, F.1
  • 8
    • 0033899751 scopus 로고    scopus 로고
    • Natural selection, infectious transfer and the existence conditions for bacterial plasmids
    • Bergström, C. T., Lipsitch, M. & Levin, B. R. 2000 Natural selection, infectious transfer and the existence conditions for bacterial plasmids. Genetics 155, 1505-1519.
    • (2000) Genetics , vol.155 , pp. 1505-1519
    • Bergström, C.T.1    Lipsitch, M.2    Levin, B.R.3
  • 9
    • 34548354843 scopus 로고    scopus 로고
    • Plasmid partition and incompatibility-the focus shifts
    • doi:10.1111/j.1365-2958.2007.05882.x
    • Bouet, J. Y., Nordstrom, K. & Lane, D. 2007 Plasmid partition and incompatibility-the focus shifts. Mol. Microbiol. 65, 1405-1414. (doi:10.1111/j.1365-2958.2007.05882.x)
    • (2007) Mol. Microbiol , vol.65 , pp. 1405-1414
    • Bouet, J.Y.1    Nordstrom, K.2    Lane, D.3
  • 10
    • 0018961637 scopus 로고
    • Morphological and serological relationships of conjugative pili
    • doi:10.1016/0147-619x(80) 90005-0
    • Bradley, D. E. 1980 Morphological and serological relationships of conjugative pili. Plasmid 4, 155-169. (doi:10.1016/0147-619x(80) 90005-0)
    • (1980) Plasmid , vol.4 , pp. 155-169
    • Bradley, D.E.1
  • 11
    • 0019150116 scopus 로고
    • Specification of surface mating systems among conjugative drug resistance plasmids in Escherichia coli K-12
    • Bradley, D. E., Taylor, D. E. & Cohen, D. R. 1980 Specification of surface mating systems among conjugative drug resistance plasmids in Escherichia coli K-12. J. Bacteriol. 143, 1466-1470.
    • (1980) J. Bacteriol , vol.143 , pp. 1466-1470
    • Bradley, D.E.1    Taylor, D.E.2    Cohen, D.R.3
  • 12
    • 34547578350 scopus 로고    scopus 로고
    • Establishment and early succession of a multispecies biofilm composed of soil bacteria
    • doi:10.1007/S00248-007.9222- 5
    • Burmølle, M., Hansen, L. H. & Sorensen, S. J. 2007 Establishment and early succession of a multispecies biofilm composed of soil bacteria. Microb. Ecol. 54, 352-362. (doi:10.1007/S00248-007.9222- 5)
    • (2007) Microb. Ecol , vol.54 , pp. 352-362
    • Burmølle, M.1    Hansen, L.H.2    Sorensen, S.J.3
  • 13
    • 38849153516 scopus 로고    scopus 로고
    • Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains
    • doi:10.1099/mic.0.2007/ 010454-0
    • Burmølle, M., Bahl, M. I., Jensen, L. B., Sorensen, S. J. & Hansen, L. H. 2008 Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains. Microbiology 154, 187-195. (doi:10.1099/mic.0.2007/ 010454-0)
    • (2008) Microbiology , vol.154 , pp. 187-195
    • Burmølle, M.1    Bahl, M.I.2    Jensen, L.B.3    Sorensen, S.J.4    Hansen, L.H.5
  • 14
    • 0036439064 scopus 로고    scopus 로고
    • Conjugative transposons: The tip of the iceberg
    • doi:10.1046/j.1365-2958.2002.03191.x
    • Burrus, V., Pavlovic, G., Decaris, B. & Guedon, G. 2002 Conjugative transposons: the tip of the iceberg. Mol. Microbiol. 46, 601-610. (doi:10.1046/j.1365-2958.2002.03191.x)
    • (2002) Mol. Microbiol , vol.46 , pp. 601-610
    • Burrus, V.1    Pavlovic, G.2    Decaris, B.3    Guedon, G.4
  • 15
    • 0035217633 scopus 로고    scopus 로고
    • Conjugal type IV macromolecular transfer systems of Gram-negative bacteria: Organismal distribution, structural constraints and evolutionary conclusions
    • Cao, T. B. & Saier Jr, M. H. 2001 Conjugal type IV macromolecular transfer systems of Gram-negative bacteria: organismal distribution, structural constraints and evolutionary conclusions. Microbiology 147, 3201-3214.
    • (2001) Microbiology , vol.147 , pp. 3201-3214
    • Cao, T.B.1    Saier Jr, M.H.2
  • 16
    • 1842456892 scopus 로고    scopus 로고
    • The versatile bacterial type IV secretion systems
    • doi:10.1038/nrmicro753
    • Cascales, E. & Christie, P. J. 2003 The versatile bacterial type IV secretion systems. Nat. Rev. Microbiol. 1, 137-149. (doi:10.1038/nrmicro753)
    • (2003) Nat. Rev. Microbiol , vol.1 , pp. 137-149
    • Cascales, E.1    Christie, P.J.2
  • 17
    • 0033975239 scopus 로고    scopus 로고
    • A bacterial genome in flux: The twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi
    • doi:10.1046/j.1365-2958.2000.01698.x
    • Casjens, S. et al. 2000 A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi. Mol. Microbiol. 35, 490-516. (doi:10.1046/j.1365-2958.2000.01698.x)
    • (2000) Mol. Microbiol , vol.35 , pp. 490-516
    • Casjens, S.1
  • 18
    • 3042596928 scopus 로고    scopus 로고
    • DNA uptake during bacterial transformation
    • doi:10.1038/nrmicro844
    • Chen, I. & Dubnau, D. 2004 DNA uptake during bacterial transformation. Nat. Rev. Microbiol. 2, 241-249. (doi:10.1038/nrmicro844)
    • (2004) Nat. Rev. Microbiol , vol.2 , pp. 241-249
    • Chen, I.1    Dubnau, D.2
  • 19
    • 27144463959 scopus 로고    scopus 로고
    • Biogenesis, architecture, and function of bacterial type IV secretion systems
    • doi:10.1146/annurev.micro.58.030603.123630
    • Christie, P. J., Atmakuri, K., Krishnamoorthy, V., Jakubowski, S. & Cascales, E. 2005 Biogenesis, architecture, and function of bacterial type IV secretion systems. Annu. Rev. Microbiol. 59, 451. (doi:10.1146/annurev.micro.58.030603.123630)
    • (2005) Annu. Rev. Microbiol , vol.59 , pp. 451
    • Christie, P.J.1    Atmakuri, K.2    Krishnamoorthy, V.3    Jakubowski, S.4    Cascales, E.5
  • 21
    • 0027739965 scopus 로고
    • Bacterial plasmids: Their extraordinary contribution to molecular genetics
    • doi:10.1016/0378-1119(93) 90050-D
    • Cohen, S. N. 1993 Bacterial plasmids: their extraordinary contribution to molecular genetics. Gene 135, 67-76. (doi:10.1016/0378-1119(93) 90050-D)
    • (1993) Gene , vol.135 , pp. 67-76
    • Cohen, S.N.1
  • 23
    • 0032870855 scopus 로고    scopus 로고
    • Genetic exchange between bacteria in the environment
    • doi:10.1006/plas.1999.1421
    • Davidson, J. 1999 Genetic exchange between bacteria in the environment. Plasmid 42, 73-91. (doi:10.1006/plas.1999.1421)
    • (1999) Plasmid , vol.42 , pp. 73-91
    • Davidson, J.1
  • 24
    • 34247892449 scopus 로고    scopus 로고
    • Gene and cell survival: Lessons from prokaryotic plasmid R1
    • 458-464, doi:10.1038/sj.embor.7400957
    • de la Cueva-Méndez, G. & Pimentel, B. 2007 Gene and cell survival: lessons from prokaryotic plasmid R1. EMBO Rep. 8, 458-464. (doi:10.1038/sj.embor.7400957)
    • (2007) EMBO Rep , vol.8
    • de la Cueva-Méndez, G.1    Pimentel, B.2
  • 26
    • 0037039357 scopus 로고    scopus 로고
    • The genome sequence of the facultative intracellular pathogen Brucella melitensis
    • doi:10.1073/pnas. 221575398
    • DelVecchio, V. G. et al. 2002 The genome sequence of the facultative intracellular pathogen Brucella melitensis. Proc. Nat. Acad. Sci. USA 99, 443-448. (doi:10.1073/pnas. 221575398)
    • (2002) Proc. Nat. Acad. Sci. USA , vol.99 , pp. 443-448
    • DelVecchio, V.G.1
  • 27
    • 2442449227 scopus 로고    scopus 로고
    • Genomic islands in pathogenic and environmental microorganisms
    • doi:10.1038/nrmicro884
    • Dobrindt, U., Hochhut, B., Hentschel, U. & Hacker, J. 2004 Genomic islands in pathogenic and environmental microorganisms. Nat. Rev. Microbiol. 2, 414-424. (doi:10.1038/nrmicro884)
    • (2004) Nat. Rev. Microbiol , vol.2 , pp. 414-424
    • Dobrindt, U.1    Hochhut, B.2    Hentschel, U.3    Hacker, J.4
  • 28
    • 0025397791 scopus 로고
    • Evolution in bacterial plasmids and levels of selection
    • doi:10.1086/416582
    • Eberhard, W. G. 1990 Evolution in bacterial plasmids and levels of selection. Q. Rev. Biol. 65, 3-22. (doi:10.1086/416582)
    • (1990) Q. Rev. Biol , vol.65 , pp. 3-22
    • Eberhard, W.G.1
  • 29
    • 33750042532 scopus 로고    scopus 로고
    • Dynamics of the IncW genetic backbone imply general trends in conjugative plasmid evolution
    • doi:10.1111/j.1574-6976.2006.00042.x
    • Fernandez-Lopez, R., Garcillan-Barcia, M. P., Revilla, C., Lazaro, M., Vielva, L. & de la, C. F. 2006 Dynamics of the IncW genetic backbone imply general trends in conjugative plasmid evolution. FEMS Microbiol. Rev. 30, 942-966. (doi:10.1111/j.1574-6976.2006.00042.x)
    • (2006) FEMS Microbiol. Rev , vol.30 , pp. 942-966
    • Fernandez-Lopez, R.1    Garcillan-Barcia, M.P.2    Revilla, C.3    Lazaro, M.4    Vielva, L.5    de la, C.F.6
  • 30
    • 17744395110 scopus 로고    scopus 로고
    • Functional divergence and horizontal transfer of type IV secretion systems
    • doi:10.1093/molbev/msi124
    • Frank, A. C., Alsmark, C. M., Thollesson, M. & Andersson, S. G. E. 2005 Functional divergence and horizontal transfer of type IV secretion systems, Mol. Biol. Evol. 22, 1325-1336. (doi:10.1093/molbev/msi124)
    • (2005) Mol. Biol. Evol , vol.22 , pp. 1325-1336
    • Frank, A.C.1    Alsmark, C.M.2    Thollesson, M.3    Andersson, S.G.E.4
  • 31
    • 32844465575 scopus 로고    scopus 로고
    • Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea
    • doi:10.1038/nature04435
    • Frigaard, N. U., Martinez, A., Mincer, T. J. & DeLong, E. F. 2006 Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea. Nature 439, 847-850. (doi:10.1038/nature04435)
    • (2006) Nature , vol.439 , pp. 847-850
    • Frigaard, N.U.1    Martinez, A.2    Mincer, T.J.3    DeLong, E.F.4
  • 32
    • 23944506044 scopus 로고    scopus 로고
    • Mobile genetic elements: The agents of open source evolution
    • doi:10.1038/nrmicro/235
    • Frost, L. S., Leplae, R., Summers, A. O. & Toussaint, A. 2005 Mobile genetic elements: the agents of open source evolution. Nat. Rev. Microbiol. 3, 722-732. (doi:10.1038/nrmicro/235)
    • (2005) Nat. Rev. Microbiol , vol.3 , pp. 722-732
    • Frost, L.S.1    Leplae, R.2    Summers, A.O.3    Toussaint, A.4
  • 33
    • 0035958746 scopus 로고    scopus 로고
    • The composite genome of the legume symbiont Sinorhizobium meliloti
    • doi:10.1126/science.1060966
    • Galibert, F. et al. 2001 The composite genome of the legume symbiont Sinorhizobium meliloti. Science 293, 668-672. (doi:10.1126/science.1060966)
    • (2001) Science , vol.293 , pp. 668-672
    • Galibert, F.1
  • 34
    • 17844370503 scopus 로고    scopus 로고
    • Prokaryotic toxin-antitoxin stress response loci
    • doi:10.1038/nrmicro1147
    • Gerdes, K., Christensen, S. K. & Lobner-Olesen, A. 2005 Prokaryotic toxin-antitoxin stress response loci. Nat. Rev. Microbiol. 3, 371-382. (doi:10.1038/nrmicro1147)
    • (2005) Nat. Rev. Microbiol , vol.3 , pp. 371-382
    • Gerdes, K.1    Christensen, S.K.2    Lobner-Olesen, A.3
  • 35
    • 0035954733 scopus 로고    scopus 로고
    • Natural conjugative plasmids induce bacterial biofilm development
    • doi:10.1038/35086581
    • Ghigo, J. M. 2001 Natural conjugative plasmids induce bacterial biofilm development. Nature 412, 442-445. (doi:10.1038/35086581)
    • (2001) Nature , vol.412 , pp. 442-445
    • Ghigo, J.M.1
  • 36
    • 0037271207 scopus 로고    scopus 로고
    • Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: Combined structural, functional and phylogenetic perspectives
    • doi:10.1111/j.1574-6976.2003.tb00629.x
    • Giraldo, R. 2003 Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: combined structural, functional and phylogenetic perspectives. FEMS Microbiol. Rev. 26, 533-554. (doi:10.1111/j.1574-6976.2003.tb00629.x)
    • (2003) FEMS Microbiol. Rev , vol.26 , pp. 533-554
    • Giraldo, R.1
  • 37
    • 33846551381 scopus 로고    scopus 로고
    • Biology's next revolution
    • doi:10.1038/445369a
    • Goldenfeld, N. & Woese, C. 2007 Biology's next revolution, Nature 445, 369. (doi:10.1038/445369a)
    • (2007) Nature , vol.445 , pp. 369
    • Goldenfeld, N.1    Woese, C.2
  • 38
    • 34447547677 scopus 로고    scopus 로고
    • Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria
    • doi:10.1093/jac/dkm167
    • Hansen, L. H., Jensen, L. B., Sørensen, H. I. & Sørensen, S. J. 2007 Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria. J. Antimicrob. Chemother. 60, 145-147. (doi:10.1093/jac/dkm167)
    • (2007) J. Antimicrob. Chemother , vol.60 , pp. 145-147
    • Hansen, L.H.1    Jensen, L.B.2    Sørensen, H.I.3    Sørensen, S.J.4
  • 39
    • 49149113206 scopus 로고    scopus 로고
    • Comparative genomics of the mycobacteriophages: Insights into bacteriophage evolution
    • doi:10.1016/j.resmic.2008.04.008
    • Hatfull, G. F., Cresawn, S. G. & Hendrix, R. W. 2008 Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution. Res. Microbiol. 159, 332-339. (doi:10.1016/j.resmic.2008.04.008)
    • (2008) Res. Microbiol , vol.159 , pp. 332-339
    • Hatfull, G.F.1    Cresawn, S.G.2    Hendrix, R.W.3
  • 40
    • 31544463593 scopus 로고    scopus 로고
    • The bacterial segrosome: A dynamic nucleoprotein machine for DNA trafficking and segregation
    • doi:10.1038/nrmicro1342
    • Hayes, F. & Barilla, D. 2006 The bacterial segrosome: a dynamic nucleoprotein machine for DNA trafficking and segregation. Nat. Rev. Microbiol. 4, 133-143. (doi:10.1038/nrmicro1342)
    • (2006) Nat. Rev. Microbiol , vol.4 , pp. 133-143
    • Hayes, F.1    Barilla, D.2
  • 41
    • 33745316761 scopus 로고    scopus 로고
    • Introduction to plasmids: A selective view of their history
    • eds B. E. Funnell & G. J. Phillips pp, Washington, DC: ASM Press
    • Helinski, D. R. 2000 Introduction to plasmids: a selective view of their history. In Plasmid biology (eds B. E. Funnell & G. J. Phillips) pp. 1-21. Washington, DC: ASM Press.
    • (2000) Plasmid biology , pp. 1-21
    • Helinski, D.R.1
  • 42
    • 38849130017 scopus 로고    scopus 로고
    • Double illegitimate recombination events integrate DNA segments through two different mechanisms during natural transformation of Acinetobacter baylyi
    • doi:10.1111/j.1365-2958.2007.06096.x
    • Hülter, N. & Wackernagel, W. 2008 Double illegitimate recombination events integrate DNA segments through two different mechanisms during natural transformation of Acinetobacter baylyi. Mol. Microbiol. 67, 984-995. (doi:10.1111/j.1365-2958.2007.06096.x)
    • (2008) Mol. Microbiol , vol.67 , pp. 984-995
    • Hülter, N.1    Wackernagel, W.2
  • 43
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • doi:10.1073/pnas.96.7.3801
    • Jain, R., Rivera, M. C. & Lake, J. A. 1999 Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Nat. Acad. Sci. USA 96, 3801-3806. (doi:10.1073/pnas.96.7.3801)
    • (1999) Proc. Nat. Acad. Sci. USA , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 44
    • 0242371471 scopus 로고    scopus 로고
    • Horizontal gene transfer accelerates genome innovation and evolution
    • doi:10.1093/molbev/msg154
    • Jain, R., Rivera, M. C., Moore, J. E. & Lake, J. A. 2003 Horizontal gene transfer accelerates genome innovation and evolution. Mol. Biol. Evol. 20, 1598-1602. (doi:10.1093/molbev/msg154)
    • (2003) Mol. Biol. Evol , vol.20 , pp. 1598-1602
    • Jain, R.1    Rivera, M.C.2    Moore, J.E.3    Lake, J.A.4
  • 45
    • 3142574629 scopus 로고    scopus 로고
    • What drives bacteria to produce a bio-film?
    • Jefferson, K. K. 2004 What drives bacteria to produce a bio-film? FEMS Microbiol. Lett. 236, 163-173.
    • (2004) FEMS Microbiol. Lett , vol.236 , pp. 163-173
    • Jefferson, K.K.1
  • 46
    • 33845959386 scopus 로고    scopus 로고
    • Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome
    • doi:10.1038/nmeth964
    • Jones, B. V. & Marchesi, J. R. 2007 Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome. Nat. Methods 4, 55-61. (doi:10.1038/nmeth964)
    • (2007) Nat. Methods , vol.4 , pp. 55-61
    • Jones, B.V.1    Marchesi, J.R.2
  • 47
    • 0031970758 scopus 로고    scopus 로고
    • Origin and evolution of plasmids
    • doi:10.1023/A:1000652513822
    • Kado, C. I. 1998 Origin and evolution of plasmids. Antonie van Leeuwenhoek 73, 117-126. (doi:10.1023/A:1000652513822)
    • (1998) Antonie van Leeuwenhoek , vol.73 , pp. 117-126
    • Kado, C.I.1
  • 48
    • 0035883519 scopus 로고    scopus 로고
    • Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution
    • doi:10.1093/nar/29.18.3742
    • Kobayashi, I. 2001 Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution. Nucleic Acids Res. 29, 3742-3756. (doi:10.1093/nar/29.18.3742)
    • (2001) Nucleic Acids Res , vol.29 , pp. 3742-3756
    • Kobayashi, I.1
  • 49
    • 57149085868 scopus 로고    scopus 로고
    • Genomics of Bacteria and Archaea: The emerging dynamic view of the prokaryotic world
    • doi:10.1093/nar/gkn668
    • Koonin, E. V. & Wolf, Y. I. 2008 Genomics of Bacteria and Archaea: the emerging dynamic view of the prokaryotic world. Nucleic Acids Res. 36, 6688-6719. (doi:10.1093/nar/gkn668)
    • (2008) Nucleic Acids Res , vol.36 , pp. 6688-6719
    • Koonin, E.V.1    Wolf, Y.I.2
  • 50
    • 0242440314 scopus 로고    scopus 로고
    • Gene organization: Selection, selfishness, and serendipity
    • doi:10.1146/annurev. micro.57.030502.090816
    • Lawrence, J. G. 2003 Gene organization: selection, selfishness, and serendipity. Ann. Rev. Microbiol. 57, 419. (doi:10.1146/annurev. micro.57.030502.090816)
    • (2003) Ann. Rev. Microbiol , vol.57 , pp. 419
    • Lawrence, J.G.1
  • 51
    • 0242490943 scopus 로고    scopus 로고
    • Lateral gene transfer: When will adolescence end?
    • doi:10.1046/j.1365-2958.2003.03778.x
    • Lawrence, J. G. & Hendrickson, H. 2003 Lateral gene transfer: when will adolescence end? Mol. Microbiol. 50, 739-749. (doi:10.1046/j.1365-2958.2003.03778.x)
    • (2003) Mol. Microbiol , vol.50 , pp. 739-749
    • Lawrence, J.G.1    Hendrickson, H.2
  • 52
    • 25144518786 scopus 로고    scopus 로고
    • Genome evolution in bacteria: Order beneath chaos
    • doi:10.1016/j.mib.2005.08.005
    • Lawrence, J. G. & Hendrickson, H. 2005 Genome evolution in bacteria: order beneath chaos. Curr. Opin. Microbiol. 8, 572-578. (doi:10.1016/j.mib.2005.08.005)
    • (2005) Curr. Opin. Microbiol , vol.8 , pp. 572-578
    • Lawrence, J.G.1    Hendrickson, H.2
  • 53
    • 0035523650 scopus 로고    scopus 로고
    • Where are the pseudogenes in bacterial genomes?
    • doi:10.1016/S0966-842x(01)02198-9
    • Lawrence, J. G., Hendrix, R. W. & Casjens, S. 2001 Where are the pseudogenes in bacterial genomes? Trends Microbiol. 9, 535-540. (doi:10.1016/S0966-842x(01)02198-9)
    • (2001) Trends Microbiol , vol.9 , pp. 535-540
    • Lawrence, J.G.1    Hendrix, R.W.2    Casjens, S.3
  • 54
    • 0000080813 scopus 로고
    • Cell genetics and hereditary symbiosis
    • Lederberg, J. 1952 Cell genetics and hereditary symbiosis. Physiol. Rev. 32, 403-430.
    • (1952) Physiol. Rev , vol.32 , pp. 403-430
    • Lederberg, J.1
  • 55
    • 0347126300 scopus 로고    scopus 로고
    • ACLAME: A classification of mobile genetic elements
    • Leplae, R., Hebrant, A., Wodak, S. J. & Toussaint, A. 2004 ACLAME: a classification of mobile genetic elements. Nucleic Acids Res. 32(Suppl.1), D45-D49.
    • (2004) Nucleic Acids Res , vol.32 , Issue.SUPPL.1
    • Leplae, R.1    Hebrant, A.2    Wodak, S.J.3    Toussaint, A.4
  • 56
    • 0034691077 scopus 로고    scopus 로고
    • Bacteria are different: Observations, interpretations, speculations, and opinions about the mechanisms of adaptive evolution in prokaryotes
    • doi:10.1073/pnas.97.13.6981
    • Levin, B. R. & Bergstrom, C. T. 2000 Bacteria are different: observations, interpretations, speculations, and opinions about the mechanisms of adaptive evolution in prokaryotes. Proc. Nat. Acad. Sci. USA 97, 6981-6985. (doi:10.1073/pnas.97.13.6981)
    • (2000) Proc. Nat. Acad. Sci. USA , vol.97 , pp. 6981-6985
    • Levin, B.R.1    Bergstrom, C.T.2
  • 57
    • 35048860903 scopus 로고    scopus 로고
    • The persistence of parasitic plasmids
    • doi:10.1534/genetics. 107.077420
    • Lili, L. N., Britton, N. F. & Feil, E. J. 2007 The persistence of parasitic plasmids. Genetics 177, 399-405. (doi:10.1534/genetics. 107.077420)
    • (2007) Genetics , vol.177 , pp. 399-405
    • Lili, L.N.1    Britton, N.F.2    Feil, E.J.3
  • 58
    • 0036047412 scopus 로고    scopus 로고
    • Llosa, M., Gomis-Ruth, F. X., Coll, M. & de la Cruz, F. F. 2002 Bacterial conjugation: a two-step mechanism for DNA transport. Mol. Microbiol. 45,1-8.(doi:10.1046/j-1365-2958.2002.03014.x)
    • Llosa, M., Gomis-Ruth, F. X., Coll, M. & de la Cruz, F. F. 2002 Bacterial conjugation: a two-step mechanism for DNA transport. Mol. Microbiol. 45,1-8.(doi:10.1046/j-1365-2958.2002.03014.x)
  • 59
    • 0022742816 scopus 로고
    • Transitory derepression and the maintenance of conjugative plasmids
    • Lundquist, P. D. & Levin, B. R. 1986 Transitory derepression and the maintenance of conjugative plasmids. Genetics 113, 483-497.
    • (1986) Genetics , vol.113 , pp. 483-497
    • Lundquist, P.D.1    Levin, B.R.2
  • 60
    • 34548488930 scopus 로고    scopus 로고
    • Hypothetical functions of toxinantitoxin systems
    • doi:10.1128/JB.00958-07
    • Magnuson, R. D. 2007 Hypothetical functions of toxinantitoxin systems. J. Bacteriol. 189, 6089-6092. (doi:10.1128/JB.00958-07)
    • (2007) J. Bacteriol , vol.189 , pp. 6089-6092
    • Magnuson, R.D.1
  • 63
    • 0035479142 scopus 로고    scopus 로고
    • Deletional bias and the evolution of bacterial genomes
    • doi:10.1016/S0168-9525(01)02447-7
    • Mira, A., Ochman, H. & Moran, N. A. 2001 Deletional bias and the evolution of bacterial genomes. Trends Genet. 17, 589-596. (doi:10.1016/S0168-9525(01)02447-7)
    • (2001) Trends Genet , vol.17 , pp. 589-596
    • Mira, A.1    Ochman, H.2    Moran, N.A.3
  • 64
    • 33750051966 scopus 로고    scopus 로고
    • Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among Gram-positive and gram-negative bacteria indigenous to the barley rhizosphere
    • doi:10.1128/AEM.00013-06
    • Musovic, S., Oregaard, G., Kroer, N. & Sorensen, S. J. 2006 Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among Gram-positive and gram-negative bacteria indigenous to the barley rhizosphere. Appl. Environ. Microbiol. 72, 6687-6692. (doi:10.1128/AEM.00013-06)
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 6687-6692
    • Musovic, S.1    Oregaard, G.2    Kroer, N.3    Sorensen, S.J.4
  • 65
    • 33750607431 scopus 로고    scopus 로고
    • Of what use is sex to bacteria? (Abstract)
    • Narra, H. P. & Ochman, H. 2006 Of what use is sex to bacteria? (Abstract). Current Biology 16, R705-R710.
    • (2006) Current Biology , vol.16
    • Narra, H.P.1    Ochman, H.2
  • 66
    • 44649178249 scopus 로고    scopus 로고
    • Norman, A., Hansen, L. H., She, Q. & S0rensen, S. J. 2008 Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux. Plasmid 60, 59-74. (doi:10.1016/j.plasmid.2008.03.003)
    • Norman, A., Hansen, L. H., She, Q. & S0rensen, S. J. 2008 Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux. Plasmid 60, 59-74. (doi:10.1016/j.plasmid.2008.03.003)
  • 67
    • 38949168473 scopus 로고    scopus 로고
    • Diversifying selection and concerted evolution of a type IV secretion system in Bartonella
    • doi:10.1093/molbev/ msm252
    • Nystedt, B., Frank, A. C., Thollesson, M. & Andersson, S. G. E., 2008 Diversifying selection and concerted evolution of a type IV secretion system in Bartonella. Mol. Biol. Evol. 25, 287-300. (doi:10.1093/molbev/ msm252)
    • (2008) Mol. Biol. Evol , vol.25 , pp. 287-300
    • Nystedt, B.1    Frank, A.C.2    Thollesson, M.3    Andersson, S.G.E.4
  • 68
    • 33645221999 scopus 로고    scopus 로고
    • The nature and dynamics of bacterial genomes
    • doi:10.1126/science.1119966
    • Ochman, H. & Davalos, L. M. 2006 The nature and dynamics of bacterial genomes. Science 311, 1730-1733. (doi:10.1126/science.1119966)
    • (2006) Science , vol.311 , pp. 1730-1733
    • Ochman, H.1    Davalos, L.M.2
  • 69
    • 0036921671 scopus 로고    scopus 로고
    • Osborn, M. A. & Böltner, D. 2002 When phage, plasmids, and transposons collide: genomic islands, and conjugative-and mobilizable- transposons as a mosaic continuum. Plasmid 48, 202-212.(doi:10.1016/S0147-619x(02)00117-8)
    • Osborn, M. A. & Böltner, D. 2002 When phage, plasmids, and transposons collide: genomic islands, and conjugative-and mobilizable- transposons as a mosaic continuum. Plasmid 48, 202-212.(doi:10.1016/S0147-619x(02)00117-8)
  • 70
    • 35349003200 scopus 로고    scopus 로고
    • Pallen, M. J. & Wren, B. W. 2007 Bacterial pathogenomics. Nature 449, 835-842.(doi:10.1038/nature06248)
    • Pallen, M. J. & Wren, B. W. 2007 Bacterial pathogenomics. Nature 449, 835-842.(doi:10.1038/nature06248)
  • 71
    • 0036672643 scopus 로고    scopus 로고
    • Multileveled selection on plasmid replication
    • Paulsson, J. 2002 Multileveled selection on plasmid replication. Genetics 161, 1373-1384.
    • (2002) Genetics , vol.161 , pp. 1373-1384
    • Paulsson, J.1
  • 72
    • 0032568587 scopus 로고    scopus 로고
    • Genomic evidence for two functionally distinct gene classes
    • doi:10.1073/pnas.95.11.6239
    • Rivera, M. C., Jain, R., Moore, J. E. & Lake, J. A. 1998 Genomic evidence for two functionally distinct gene classes. Proc. Nat. Acad. Sci. USA 95, 6239-6244. (doi:10.1073/pnas.95.11.6239)
    • (1998) Proc. Nat. Acad. Sci. USA , vol.95 , pp. 6239-6244
    • Rivera, M.C.1    Jain, R.2    Moore, J.E.3    Lake, J.A.4
  • 73
    • 46049106335 scopus 로고    scopus 로고
    • Chromosomal toxin-antitoxin systems may act as antiaddiction modules
    • doi:10.1128/JB.00357-08
    • Saavedra De Bast, M., Mine, N. & Van Melderen, L. 2008 Chromosomal toxin-antitoxin systems may act as antiaddiction modules. J. Bacteriol. 190, 4603-4609. (doi:10.1128/JB.00357-08)
    • (2008) J. Bacteriol , vol.190 , pp. 4603-4609
    • Saavedra De Bast, M.1    Mine, N.2    Van Melderen, L.3
  • 74
    • 55549141868 scopus 로고    scopus 로고
    • Diversity of IncP-9 plasmids of Pseudomonas
    • doi:10.1099/mic.0. 2008/017939.0
    • Sevastsyanovich, Y. R. et al. 2008 Diversity of IncP-9 plasmids of Pseudomonas. Microbiology 154, 2929-2941. (doi:10.1099/mic.0. 2008/017939.0)
    • (2008) Microbiology , vol.154 , pp. 2929-2941
    • Sevastsyanovich, Y.R.1
  • 75
    • 0035945570 scopus 로고    scopus 로고
    • Genome evolution: Gene capture in archaeal chromosomes
    • doi:10.1038/35054138
    • She, Q., Peng, X., Zillig, W. & Garrett, R. A. 2001 Genome evolution: gene capture in archaeal chromosomes. Nature 409, 478. (doi:10.1038/35054138)
    • (2001) Nature , vol.409 , pp. 478
    • She, Q.1    Peng, X.2    Zillig, W.3    Garrett, R.A.4
  • 76
    • 0037288103 scopus 로고    scopus 로고
    • Species differences in plasmid carriage in the Enterobacteriaceae
    • doi:10.1016/S0147-619x(02)00107-5
    • Sherley, M., Gordon, D. M. & Collignon, P. J. 2003 Species differences in plasmid carriage in the Enterobacteriaceae. Plasmid 49, 79-85. (doi:10.1016/S0147-619x(02)00107-5)
    • (2003) Plasmid , vol.49 , pp. 79-85
    • Sherley, M.1    Gordon, D.M.2    Collignon, P.J.3
  • 77
    • 51649114043 scopus 로고    scopus 로고
    • Progress towards understanding the fate of plasmids in bacterial communities
    • doi:10.1111/j.1574.6941.2008. 00505.x
    • Slater, F. R., Bailey, M. J., Tett, A. J. & Turner, S. L. 2008 Progress towards understanding the fate of plasmids in bacterial communities. FEMS Microbiol. Ecol. 66, 3-13. (doi:10.1111/j.1574.6941.2008. 00505.x)
    • (2008) FEMS Microbiol. Ecol , vol.66 , pp. 3-13
    • Slater, F.R.1    Bailey, M.J.2    Tett, A.J.3    Turner, S.L.4
  • 78
    • 23944441749 scopus 로고    scopus 로고
    • Horizontal gene transfer: Perspectives at a crossroads of scientific disciplines
    • doi:10.1038/nrmicro1253
    • Smets, B. F. & Barkay, T. 2005 Horizontal gene transfer: perspectives at a crossroads of scientific disciplines. Nat. Rev. Microbiol. 3, 675-678. (doi:10.1038/nrmicro1253)
    • (2005) Nat. Rev. Microbiol , vol.3 , pp. 675-678
    • Smets, B.F.1    Barkay, T.2
  • 79
    • 23944484031 scopus 로고    scopus 로고
    • Studying plasmid horizontal transfer in situ: A critical review
    • doi:10.1038/nrmicro1232
    • Sørensen, S. J., Bailey, M., Hansen, L. H., Kroer, N. & Wuertz, S. 2005 Studying plasmid horizontal transfer in situ: a critical review. Nat. Rev. Microbiol. 3, 700-710. (doi:10.1038/nrmicro1232)
    • (2005) Nat. Rev. Microbiol , vol.3 , pp. 700-710
    • Sørensen, S.J.1    Bailey, M.2    Hansen, L.H.3    Kroer, N.4    Wuertz, S.5
  • 80
    • 0035514941 scopus 로고    scopus 로고
    • Gene cassette PCR: Sequence-independent recovery of entire genes from environmental DNA
    • doi:10.1128/AEM.67.11.5240-5246. 2001
    • Stokes, H. W., Holmes, A. J., Nield, B. S., Holley, M. P., Nevalainen, K. M. H., Mabbutt, B. C. & Gillings, M. R. 2001 Gene cassette PCR: sequence-independent recovery of entire genes from environmental DNA. Appl. Environ. Microbiol. 67, 5240-5246. (doi:10.1128/AEM.67.11.5240-5246. 2001)
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 5240-5246
    • Stokes, H.W.1    Holmes, A.J.2    Nield, B.S.3    Holley, M.P.4    Nevalainen, K.M.H.5    Mabbutt, B.C.6    Gillings, M.R.7
  • 81
    • 0031659852 scopus 로고    scopus 로고
    • Timing, self-control and a sense of direction are the secrets of multicopy plasmid stability
    • doi:10.1046/j.1365-2958.1998.01012.x
    • Summers, D. 1998 Timing, self-control and a sense of direction are the secrets of multicopy plasmid stability. Mol. Microbiol. 29, 1137-1145. (doi:10.1046/j.1365-2958.1998.01012.x)
    • (1998) Mol. Microbiol , vol.29 , pp. 1137-1145
    • Summers, D.1
  • 82
    • 0027255960 scopus 로고
    • Multicopy plasmid instability: The dimer catastrophe hypothesis
    • doi:10.1111/j.1365-2958.1993.tb01648.x
    • Summers, D. K., Beton, C. W. & Withers, H. L. 1993 Multicopy plasmid instability: the dimer catastrophe hypothesis. Mol. Microbiol. 8, 1031-1038. (doi:10.1111/j.1365-2958.1993.tb01648.x)
    • (1993) Mol. Microbiol , vol.8 , pp. 1031-1038
    • Summers, D.K.1    Beton, C.W.2    Withers, H.L.3
  • 83
    • 50149091263 scopus 로고    scopus 로고
    • Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analyzed by the 454-pyrosequencing technology
    • doi:10.1016/j.jbiotec. 2008.03.020
    • Szczepanowski, R., Bekel, T., Goesmann, A., Krause, L., Krömeke, H., Kaiser, O., Eichler, W., Pühler, A. & Schlüter, A. 2008 Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analyzed by the 454-pyrosequencing technology. J. Biotechnol. 136, 54-64. (doi:10.1016/j.jbiotec. 2008.03.020)
    • (2008) J. Biotechnol , vol.136 , pp. 54-64
    • Szczepanowski, R.1    Bekel, T.2    Goesmann, A.3    Krause, L.4    Krömeke, H.5    Kaiser, O.6    Eichler, W.7    Pühler, A.8    Schlüter, A.9
  • 84
    • 0035987241 scopus 로고    scopus 로고
    • The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere
    • Tauch, A. et al. 2002 The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere. Microbiology 148, 1637-1653.
    • (2002) Microbiology , vol.148 , pp. 1637-1653
    • Tauch, A.1
  • 85
    • 0033854944 scopus 로고    scopus 로고
    • Paradigms of plasmid organization
    • doi:10.1046/j.1365-2958.2000.02006.x
    • Thomas, C. M. 2000 Paradigms of plasmid organization. Mol. Microbiol. 37, 485-491. (doi:10.1046/j.1365-2958.2000.02006.x)
    • (2000) Mol. Microbiol , vol.37 , pp. 485-491
    • Thomas, C.M.1
  • 86
    • 23944475626 scopus 로고    scopus 로고
    • Mechanisms of, and barriers to, horizontal gene transfer between bacteria
    • doi:10.1038/nrmicro1234
    • Thomas, C. M. & Nielsen, K. M. 2005 Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Rev. Microbiol. 3, 711-721. (doi:10.1038/nrmicro1234)
    • (2005) Nat. Rev. Microbiol , vol.3 , pp. 711-721
    • Thomas, C.M.1    Nielsen, K.M.2
  • 87
    • 0034056410 scopus 로고    scopus 로고
    • Stability by multimer resolution of pJHCMW1 is due to the Tn1331 resolvase and not to the Escherichia coli Xer system
    • Tolmasky, M. E., Colloms, S., Blakely, G. & Sherratt, D. J. 2000 Stability by multimer resolution of pJHCMW1 is due to the Tn1331 resolvase and not to the Escherichia coli Xer system. Microbiology 146, 581-589.
    • (2000) Microbiology , vol.146 , pp. 581-589
    • Tolmasky, M.E.1    Colloms, S.2    Blakely, G.3    Sherratt, D.J.4
  • 88
    • 0036152835 scopus 로고    scopus 로고
    • Mobile elements as a combination of functional modules
    • doi:10.1006/plas.2001. 1552
    • Toussaint, A. & Merlin, C. 2002 Mobile elements as a combination of functional modules. Plasmid 47, 26-35. (doi:10.1006/plas.2001. 1552)
    • (2002) Plasmid , vol.47 , pp. 26-35
    • Toussaint, A.1    Merlin, C.2
  • 89
    • 20244376755 scopus 로고    scopus 로고
    • Comparative metagenomics of microbial communities
    • doi:10.1126/science.1107851
    • Tringe, S. G. et al. 2005 Comparative metagenomics of microbial communities. Science 308, 554-557. (doi:10.1126/science.1107851)
    • (2005) Science , vol.308 , pp. 554-557
    • Tringe, S.G.1
  • 90
    • 11144354360 scopus 로고    scopus 로고
    • Environmental genome shotgun sequencing of the Sargasso Sea
    • doi:10.1126/science. 1093857
    • Venter, J. C. et al. 2004 Environmental genome shotgun sequencing of the Sargasso Sea. Science 304, 66-74. (doi:10.1126/science. 1093857)
    • (2004) Science , vol.304 , pp. 66-74
    • Venter, J.C.1
  • 91
    • 0002378304 scopus 로고    scopus 로고
    • Conjugative-DNA processes
    • ed. C. M. Thomas, pp, Amsterdam, The Netherlands: Harwood Academic Publishers
    • Zechner, E. L. et al. 2000 Conjugative-DNA processes. In The horizontal gene pool (ed. C. M. Thomas), pp. 87-174. Amsterdam, The Netherlands: Harwood Academic Publishers.
    • (2000) The horizontal gene pool , pp. 87-174
    • Zechner, E.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.