Complete genome sequence of acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader

Journal of Bacteriology

Volumn 194, Issue 24, 2012, Pages 6970-6971

  Ohtsubo, Yoshiyuki ^a   Maruyama, Fumito ^b   Mitsui, Hisayuki ^a   Nagata, Yuji ^a   Tsuda, Masataka ^a  

^a TOHOKU UNIVERSITY   (Japan)

^b TOKYO MEDICAL AND DENTAL UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

POLYCHLORINATED BIPHENYL;

ACIDOVORAX; ARTICLE; BACTERIUM ISOLATION; CHROMOSOME; GENE SEQUENCE; JAPAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; PROTEOBACTERIA; SOIL ANALYSIS;

BASE SEQUENCE; BIODEGRADATION, ENVIRONMENTAL; COMAMONADACEAE; DNA, BACTERIAL; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; POLYCHLORINATED BIPHENYLS; RNA, BACTERIAL; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

ACIDOVORAX;

EID: 84870696700     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01848-12     Document Type: Article

References (16)

1. Delawary M, Ohtsubo Y, Ohta A. 2003. The dual functions of biphenyldegrading ability of Pseudomonas sp. KKS102: energy acquisition and substrate detoxification. Biosci. Biotechnol. Biochem. 67:1970-1975.
2. Fukuda M, et al. 1994. Identification of the bphA and bphB genes of Pseudomonas sp. strains KKS102 involved in degradation of biphenyl and polychlorinated biphenyls. Biochem. Biophys. Res. Commun. 202:850-856.
3. Kikuchi Y, et al. 1994. Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102. J. Bacteriol. 176:1689-1694.
4. Kikuchi Y, Nagata Y, Ohtsubo Y, Koana T, Takagi M. 1995. Pseudomonas fluorescens KKL101, a benzoic acid degrader in a mixed culture that degrades biphenyl and polychlorinated biphenyls. Biosci. Biotechnol. Biochem. 59:2303-2304.
5. Kimbara K, et al. 1989. Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102. J. Bacteriol. 171:2740-2747.
6. Kimbara K, et al. 1988. Isolation and characterization of a mixed culture that degrades polychlorinated biphenyls. Agric. Biol. Chem. 52:2885-2891.
7. Ohtsubo Y, et al. 2001. BphS, a key transcriptional regulator of bph genes involved in polychlorinated biphenyl/biphenyl degradation in Pseudomonas sp. KKS102. J. Biol. Chem. 276:36146-36154.
8. Ohtsubo Y, Goto H, Nagata Y, Kudo T, Tsuda M. 2006. Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102. Mol. Microbiol. 60:1563-1575.
9. Ohtsubo Y, Ikeda-Ohtsubo W, Nagata Y, Tsuda M. 2008. Genome-Matcher: a graphical user interface for DNA sequence comparison. BMC Bioinformatics 9:376. doi:10.1186/1471-2105-9-376.
10. Ohtsubo Y, et al. 2012. Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element. J. Bacteriol. 194:4237-4248.
11. Ohtsubo Y, Nagata Y, Kimbara K, Takagi M, Ohta A. 2000. Expression of the bph genes involved in biphenyl/PCB degradation in Pseudomonas sp. KKS102 induced by the biphenyl degradation intermediate, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. Gene 256:223-228.
12. Ohtsubo Y, et al. 2003. Novel approach to the improvement of biphenyl and polychlorinated biphenyl degradation activity: promoter implantation by homologous recombination. Appl. Environ. Microbiol. 69:146-153.
13. Senda M, Kimura S, Kishigami S, Senda T. 2006. Crystallization and preliminary X-ray analysis of the Rieske-type [2Fe-2S] ferredoxin component of biphenyl dioxygenase from Pseudomonas sp. strain KKS102. Acta Crystallogr. F 62:590-592.
14. Senda M, Kishigami S, Kimura S, Senda T. 2007. Crystallization and preliminary X-ray analysis of the electron-transfer complex of Rieske-type [2Fe-2S] ferredoxin and NADH-dependent ferredoxin reductase derived from Acidovorax sp. strain KKS102. Acta Crystallogr. F 63:520-523.
15. Senda M, Kishigami S, Kimura S, Senda T. 2007. Crystallization and preliminary X-ray analysis of the reduced Rieske-type [2Fe-2S] ferredoxin derived from Pseudomonas sp. strain KKS102. Acta Crystallogr F 63:311-314.
16. Sugiyama K, et al. 1995. Crystallization and preliminary crystallographic analysis of a 2,3-dihydroxybiphenyl dioxygenase from Pseudomonas sp. strain KKS102 having polychlorinated biphenyl (PCB)-degrading activity. Proteins 22:284-286.