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Volumn 9, Issue 6, 2015, Pages 1280-1294

Ecological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics

Author keywords

[No Author keywords available]

Indexed keywords

ACID MINE DRAINAGE; DATA SET; GENE EXPRESSION; GENOMICS; METABOLISM; MICROBIAL COMMUNITY; PROKARYOTE; RELATIVE ABUNDANCE; SPECIES DIVERSITY;

EID: 84929655674     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2014.212     Document Type: Article
Times cited : (212)

References (78)
  • 1
    • 20444419762 scopus 로고    scopus 로고
    • Was photosynthetic RuBisCO recruited by acquisitive evolution from RuBisCO-like proteins involved in sulfur metabolism
    • Ashida H, Danchin A, Yokota. A. (2005). Was photosynthetic RuBisCO recruited by acquisitive evolution from RuBisCO-like proteins involved in sulfur metabolism? Res Microbiol 156: 611-618.
    • (2005) Res Microbiol , vol.156 , pp. 611-618
    • Ashida, H.1    Danchin, A.2    Yokota, A.3
  • 2
    • 34047264809 scopus 로고    scopus 로고
    • Life in acid: PH homeostasis in acidophiles
    • Baker-Austin C, Dopson M. (2007). Life in acid: pH homeostasis in acidophiles. Trends Microbiol 15: 165-171.
    • (2007) Trends Microbiol , vol.15 , pp. 165-171
    • Baker-Austin, C.1    Dopson, M.2
  • 3
    • 0037447834 scopus 로고    scopus 로고
    • Microbial communities in acid mine drainage
    • Baker BJ, Banfield JF. (2003). Microbial communities in acid mine drainage. FEMS Microbiol Ecol 44: 139-152.
    • (2003) FEMS Microbiol Ecol , vol.44 , pp. 139-152
    • Baker, B.J.1    Banfield, J.F.2
  • 6
    • 80054744476 scopus 로고    scopus 로고
    • Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta-and proteo-genomics
    • Bertin PN, Heinrich-Salmeron A, Pelletier E, Goulhen-Chollet F, Arsène-Ploetze F, Gallien S et al. (2011). Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta-and proteo-genomics. ISME J 5: 1735-1747.
    • (2011) ISME J , vol.5 , pp. 1735-1747
    • Bertin, P.N.1    Heinrich-Salmeron, A.2    Pelletier, E.3    Goulhen-Chollet, F.4    Arsène-Ploetze, F.5    Gallien, S.6
  • 7
    • 84855653203 scopus 로고    scopus 로고
    • Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments
    • Bonnefoy V, Holmes DS. (2012). Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments. Environ Microbiol 14: 1597-1611.
    • (2012) Environ Microbiol , vol.14 , pp. 1597-1611
    • Bonnefoy, V.1    Holmes, D.S.2
  • 8
    • 69549135124 scopus 로고    scopus 로고
    • Phymm and PhymmBL: Metagenomic phylogenetic classification with interpolated Markov models
    • Brady A, Salzberg SL. (2009). Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models. Nat Methods 6: 673-676.
    • (2009) Nat Methods , vol.6 , pp. 673-676
    • Brady, A.1    Salzberg, S.L.2
  • 10
    • 12944326871 scopus 로고    scopus 로고
    • Another extreme genome: How to live at pH 0
    • Ciaramella M, Napoli A, Rossi M. (2005). Another extreme genome: how to live at pH 0. Trends Microbiol 13: 49-51.
    • (2005) Trends Microbiol , vol.13 , pp. 49-51
    • Ciaramella, M.1    Napoli, A.2    Rossi, M.3
  • 11
    • 84883557668 scopus 로고    scopus 로고
    • Shifts in microbial community composition and function in the acidification of a lead/zinc mine tailings
    • Chen LX, Li JT, Chen YT, Huang LN, Hua ZS, Hu M et al. (2013). Shifts in microbial community composition and function in the acidification of a lead/zinc mine tailings. Environ Microbiol 15: 2431-2444.
    • (2013) Environ Microbiol , vol.15 , pp. 2431-2444
    • Chen, L.X.1    Li, J.T.2    Chen, Y.T.3    Huang, L.N.4    Hua, Z.S.5    Hu, M.6
  • 13
  • 14
    • 77951498518 scopus 로고    scopus 로고
    • AMD biofilms: Using model communities to study microbial evolution and ecological complexity in nature
    • Denef VJ, Mueller RS, Banfield JF. (2010). AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. ISME J 4: 599-610.
    • (2010) ISME J , vol.4 , pp. 599-610
    • Denef, V.J.1    Mueller, R.S.2    Banfield, J.F.3
  • 16
    • 84867219630 scopus 로고    scopus 로고
    • Biodiversity, metabolism and applications of acidophilic sulfur-metabolizing microorganisms
    • Dopson M, Johnson DB. (2012). Biodiversity, metabolism and applications of acidophilic sulfur-metabolizing microorganisms. Environ Microbiol 14: 2620-2631.
    • (2012) Environ Microbiol , vol.14 , pp. 2620-2631
    • Dopson, M.1    Johnson, D.B.2
  • 17
    • 0026724009 scopus 로고
    • Some properties of glutamate dehydrogenase, glutamine synthetase and glutamate synthase from Corynebacterium callunae
    • Ertan H. (1992). Some properties of glutamate dehydrogenase, glutamine synthetase and glutamate synthase from Corynebacterium callunae. Arch Microbiol 158: 35-41.
    • (1992) Arch Microbiol , vol.158 , pp. 35-41
    • Ertan, H.1
  • 21
    • 84872981638 scopus 로고    scopus 로고
    • Expression patterns reveal niche diversification in a marine microbial assemblage
    • Gifford SM, Sharma S, Booth M, Moran MA. (2013). Expression patterns reveal niche diversification in a marine microbial assemblage. ISME J 7: 281-198.
    • (2013) ISME J , vol.7 , pp. 281-198
    • Gifford, S.M.1    Sharma, S.2    Booth, M.3    Moran, M.A.4
  • 22
    • 67649576309 scopus 로고    scopus 로고
    • Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing 'Leptospirillum rubarum'(group II) and 'Leptospirillum ferrodiazotrophum'(group III) bacteria in acid mine drainage biofilms
    • Goltsman DSA, Denef VJ, Singer SW, VerBerkmoes NC, Lefsrud M, Mueller RS et al. (2009). Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing 'Leptospirillum rubarum'(group II) and 'Leptospirillum ferrodiazotrophum'(group III) bacteria in acid mine drainage biofilms. Appl Environ Microbiol 75: 4599-4615.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 4599-4615
    • Goltsman, D.S.A.1    Denef, V.J.2    Singer, S.W.3    Verberkmoes, N.C.4    Lefsrud, M.5    Mueller, R.S.6
  • 25
    • 80052907486 scopus 로고    scopus 로고
    • Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria
    • Gregersen LH, Bryant DA, Frigaard N-U. (2011). Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria. Front Microbiol 2: 116.
    • (2011) Front Microbiol , vol.2 , pp. 116
    • Gregersen, L.H.1    Bryant, D.A.2    Frigaard, N.-U.3
  • 26
    • 33644950982 scopus 로고    scopus 로고
    • Macroscopic streamer growths in acidic, metal-rich mine waters in North Wales consist of novel and remarkably simple bacterial communities
    • Hallberg KB, Coupland K, Kimura S, Johnson DB. (2006). Macroscopic streamer growths in acidic, metal-rich mine waters in North Wales consist of novel and remarkably simple bacterial communities. Appl Environ Microbiol 72: 2022-2030.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2022-2030
    • Hallberg, K.B.1    Coupland, K.2    Kimura, S.3    Johnson, D.B.4
  • 27
    • 72449137084 scopus 로고    scopus 로고
    • Acidithiobacillus ferrivorans, sp. Nov.; Facultatively anaerobic, psychrotolerant iron-, and sulfur-oxidizing acidophiles isolated from metal mine-impacted environments
    • Hallberg KB, González-Toril E, Johnson DB. (2010). Acidithiobacillus ferrivorans, sp. nov.; facultatively anaerobic, psychrotolerant iron-, and sulfur-oxidizing acidophiles isolated from metal mine-impacted environments. Extremophiles 14: 9-19.
    • (2010) Extremophiles , vol.14 , pp. 9-19
    • Hallberg, K.B.1    González-Toril, E.2    Johnson, D.B.3
  • 28
    • 68149108374 scopus 로고    scopus 로고
    • Soil microbial communities and restoration ecology: Facilitators or followers
    • Harris J. (2009). Soil microbial communities and restoration ecology: facilitators or followers? Science 325: 573-574.
    • (2009) Science , vol.325 , pp. 573-574
    • Harris, J.1
  • 29
    • 72449136674 scopus 로고    scopus 로고
    • Isolation of novel iron-oxidizing bacteria from an acid mine water treatment plant
    • Hedrich S, Heinzel E, Seifert J, Schlömann M. (2009). Isolation of novel iron-oxidizing bacteria from an acid mine water treatment plant. Adv Mater Res 71-73: 125-128.
    • (2009) Adv Mater Res , vol.71-73 , pp. 125-128
    • Hedrich, S.1    Heinzel, E.2    Seifert, J.3    Schlömann, M.4
  • 30
    • 79251587455 scopus 로고    scopus 로고
    • Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
    • Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G et al. (2011). Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331: 463-467.
    • (2011) Science , vol.331 , pp. 463-467
    • Hess, M.1    Sczyrba, A.2    Egan, R.3    Kim, T.W.4    Chokhawala, H.5    Schroth, G.6
  • 31
    • 33749989029 scopus 로고    scopus 로고
    • Thiosulphate oxidation in the phototrophic sulphur bacterium Allochromatium vinosum
    • Hensen D, Sperling D, Trüper HG, Brune DC, Dahl C. (2006). Thiosulphate oxidation in the phototrophic sulphur bacterium Allochromatium vinosum. Mol Microbiol 62: 794-810.
    • (2006) Mol Microbiol , vol.62 , pp. 794-810
    • Hensen, D.1    Sperling, D.2    Trüper, H.G.3    Brune, D.C.4    Dahl, C.5
  • 32
    • 67349276620 scopus 로고    scopus 로고
    • In situ transcriptomic analysis of the globally important keystone N2-fixing taxon Crocosphaera watsonii
    • Hewson I, Poretsky RS, Beinart RA, White AE, Shi T, Bench SR et al. (2009). In situ transcriptomic analysis of the globally important keystone N2-fixing taxon Crocosphaera watsonii. ISME J 3: 618-631.
    • (2009) ISME J , vol.3 , pp. 618-631
    • Hewson, I.1    Poretsky, R.S.2    Beinart, R.A.3    White, A.E.4    Shi, T.5    Bench, S.R.6
  • 33
    • 79961082575 scopus 로고    scopus 로고
    • Spatial and temporal analysis of the microbial community in the tailings of a Pb-Zn mine generating acidic drainage
    • Huang LN, Zhou WH, Hallberg KB, Wan CY, Li J, Shu WS. (2011). Spatial and temporal analysis of the microbial community in the tailings of a Pb-Zn mine generating acidic drainage. Appl Environ Microbiol 77: 5540-5544.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 5540-5544
    • Huang, L.N.1    Zhou, W.H.2    Hallberg, K.B.3    Wan, C.Y.4    Li, J.5    Shu, W.S.6
  • 35
    • 84903383681 scopus 로고    scopus 로고
    • Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling
    • Hug LA, Castelle CJ, Wrighton KC, Thomas BC, Sharon I, Frischkorn KR et al. (2013). Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling. Microbiome 1: 22.
    • (2013) Microbiome , vol.1 , pp. 22
    • Hug, L.A.1    Castelle, C.J.2    Wrighton, K.C.3    Thomas, B.C.4    Sharon, I.5    Frischkorn, K.R.6
  • 36
    • 77954758453 scopus 로고    scopus 로고
    • Microbial production of recalcitrant dissolved organic matter: Long-term carbon storage in the global ocean
    • Jiao N, Herndl GJ, Hansell DA, Benner R, Kattner G, Wilhelm SW et al. (2010). Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean. Nat Rev Microbiol 8: 593-599.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 593-599
    • Jiao, N.1    Herndl, G.J.2    Hansell, D.A.3    Benner, R.4    Kattner, G.5    Wilhelm, S.W.6
  • 37
    • 0141741231 scopus 로고    scopus 로고
    • The microbiology of acidic mine waters
    • Johnson DB, Hallberg KB. (2003). The microbiology of acidic mine waters. Res Microbiol 154: 466-473.
    • (2003) Res Microbiol , vol.154 , pp. 466-473
    • Johnson, D.B.1    Hallberg, K.B.2
  • 38
    • 52949105398 scopus 로고    scopus 로고
    • Carbon, iron and sulfur metabolism in acidophilic microorganisms
    • Johnson DB, Hallberg KB. (2008). Carbon, iron and sulfur metabolism in acidophilic microorganisms. Adv Microb Physiol 54: 201-255.
    • (2008) Adv Microb Physiol , vol.54 , pp. 201-255
    • Johnson, D.B.1    Hallberg, K.B.2
  • 39
    • 84892461126 scopus 로고    scopus 로고
    • Uncovering a microbial enigma: Isolation and characterization of the streamer-generating, iron-oxidizing acidophilic bacterium, 'Ferrovum myxofaciens'
    • Johnson DB, Hallberg KB, Hedrich S. (2014). Uncovering a microbial enigma: isolation and characterization of the streamer-generating, iron-oxidizing acidophilic bacterium, 'Ferrovum myxofaciens'. Appl Environ Microbiol 80: 672-680.
    • (2014) Appl Environ Microbiol , vol.80 , pp. 672-680
    • Johnson, D.B.1    Hallberg, K.B.2    Hedrich, S.3
  • 40
    • 84868361590 scopus 로고    scopus 로고
    • Redox transformations of iron at extremely low pH: Fundamental and applied aspects
    • Johnson DB, Kanao T, Hedrich S. (2012). Redox transformations of iron at extremely low pH: fundamental and applied aspects. Front Microbiol 3: 96.
    • (2012) Front Microbiol , vol.3 , pp. 96
    • Johnson, D.B.1    Kanao, T.2    Hedrich, S.3
  • 41
  • 42
    • 84887151854 scopus 로고    scopus 로고
    • Small Genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla
    • Kantor RS, Wrighton KC, Handley KM, Sharon I, Hug LA, Castelle CJ et al. (2013). Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla. mBio 4: e00708-e00713.
    • (2013) MBio , vol.4 , pp. e00708-e00713
    • Kantor, R.S.1    Wrighton, K.C.2    Handley, K.M.3    Sharon, I.4    Hug, L.A.5    Castelle, C.J.6
  • 43
    • 79958095314 scopus 로고    scopus 로고
    • Biodiversity and geochemistry of an extremely acidic, low temperature subterranean environment sustained by chemolithotrophy
    • Kimura S, Bryan CG, Hallberg KB, Johnson DB. (2011). Biodiversity and geochemistry of an extremely acidic, low temperature subterranean environment sustained by chemolithotrophy. Environ Microbiol 13: 2092-2104.
    • (2011) Environ Microbiol , vol.13 , pp. 2092-2104
    • Kimura, S.1    Bryan, C.G.2    Hallberg, K.B.3    Johnson, D.B.4
  • 44
    • 0035983604 scopus 로고    scopus 로고
    • Microbial reduction of Fe(III) in the presence of oxygen under low pH conditions
    • Küsel K, Roth U, Drake HL. (2002). Microbial reduction of Fe(III) in the presence of oxygen under low pH conditions. Environ Microbiol 4: 414-421.
    • (2002) Environ Microbiol , vol.4 , pp. 414-421
    • Küsel, K.1    Roth, U.2    Drake, H.L.3
  • 45
    • 84876836573 scopus 로고    scopus 로고
    • Contemporary environmental variation determines microbial diversity patterns in acid mine drainage
    • Kuang JL, Huang LN, Chen LX, Hua ZS, Li SJ, Hu M et al. (2013). Contemporary environmental variation determines microbial diversity patterns in acid mine drainage. ISME J 7: 1038-1050.
    • (2013) ISME J , vol.7 , pp. 1038-1050
    • Kuang, J.L.1    Huang, L.N.2    Chen, L.X.3    Hua, Z.S.4    Li, S.J.5    Hu, M.6
  • 46
    • 33748291593 scopus 로고    scopus 로고
    • Characterization of a b-glycosidase from the thermophilic bacterium Alicyclobacillus acidocaldarius
    • Lauro BD, Rossi M, Moracci M. (2006). Characterization of a b-glycosidase from the thermophilic bacterium Alicyclobacillus acidocaldarius. Extremophiles 10: 301-310.
    • (2006) Extremophiles , vol.10 , pp. 301-310
    • Lauro, B.D.1    Rossi, M.2    Moracci, M.3
  • 47
    • 58049183225 scopus 로고    scopus 로고
    • Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: Predictions and validations
    • Levicán G, Ugalde JA, Ehrenfeld N, Maass A, Parada P. (2008). Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations. BMC Genomics 9: 581.
    • (2008) BMC Genomics , vol.9 , pp. 581
    • Levicán, G.1    Ugalde, J.A.2    Ehrenfeld, N.3    Maass, A.4    Parada, P.5
  • 48
    • 79961139136 scopus 로고    scopus 로고
    • Draft genome of the psychrotolerant acidophile Acidithiobacillus ferrivorans SS3
    • Liljeqvist M, Valdes J, Holmes DS, Dopson M. (2011). Draft genome of the psychrotolerant acidophile Acidithiobacillus ferrivorans SS3. J Bacteriol 193: 4304-4305.
    • (2011) J Bacteriol , vol.193 , pp. 4304-4305
    • Liljeqvist, M.1    Valdes, J.2    Holmes, D.S.3    Dopson, M.4
  • 49
    • 84873857813 scopus 로고    scopus 로고
    • Gene identification and substrate regulation provide insights into sulfur accumulation during bioleaching with the psychrotolerant acidophile Acidithiobacillus ferrivorans
    • Liljeqvist M, Rzhepishevska OI, Dopson M. (2013). Gene identification and substrate regulation provide insights into sulfur accumulation during bioleaching with the psychrotolerant acidophile Acidithiobacillus ferrivorans. Appl Environ Microbiol 79: 951-957.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 951-957
    • Liljeqvist, M.1    Rzhepishevska, O.I.2    Dopson, M.3
  • 50
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li W, Godzik A. (2006). Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 51
    • 79961131441 scopus 로고    scopus 로고
    • Sulfur metabolism in the extreme acidophile Acidithiobacillus caldus
    • Mangold S, Valdes J, Holmes DS, Dopson M. (2011). Sulfur metabolism in the extreme acidophile Acidithiobacillus caldus. Front Microbiol 2: 17.
    • (2011) Front Microbiol , vol.2 , pp. 17
    • Mangold, S.1    Valdes, J.2    Holmes, D.S.3    Dopson, M.4
  • 52
    • 84865318505 scopus 로고    scopus 로고
    • Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
    • Mason OU, Hazen TC, Borglin S, Chain PS, Dubinsky EA, Fortney JL et al. (2012). Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J 6: 1715-1727.
    • (2012) ISME J , vol.6 , pp. 1715-1727
    • Mason, O.U.1    Hazen, T.C.2    Borglin, S.3    Chain, P.S.4    Dubinsky, E.A.5    Fortney, J.L.6
  • 53
    • 84901287027 scopus 로고    scopus 로고
    • Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage
    • Méndez-García C, Mesa V, Sprenger RR, Richter M, Diez MS, Solano J et al. (2014). Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage. ISME J 8: 1259-1274.
    • (2014) ISME J , vol.8 , pp. 1259-1274
    • Méndez-García, C.1    Mesa, V.2    Sprenger, R.R.3    Richter, M.4    Diez, M.S.5    Solano, J.6
  • 55
    • 81855170246 scopus 로고    scopus 로고
    • Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton
    • Ottesen EA, Marin R, Preston CM, Young CR, Ryan JP, Scholin CA et al. (2011). Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton. ISME J 5: 1881-1895.
    • (2011) ISME J , vol.5 , pp. 1881-1895
    • Ottesen, E.A.1    Marin, R.2    Preston, C.M.3    Young, C.R.4    Ryan, J.P.5    Scholin, C.A.6
  • 56
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace NR. (1997). A molecular view of microbial diversity and the biosphere. Science 276: 734-740.
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 58
    • 84861760530 scopus 로고    scopus 로고
    • IDBA-UD: A de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
    • Peng Y, Leung HC, Yiu SM, Chin FY. (2012). IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics 28: 1420-1428.
    • (2012) Bioinformatics , vol.28 , pp. 1420-1428
    • Peng, Y.1    Leung, H.C.2    Yiu, S.M.3    Chin, F.Y.4
  • 59
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt KD, Tatusova T, Maglott DR. (2007). NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 35: D61-D65.
    • (2007) Nucleic Acids Res , vol.35 , pp. D61-D65
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 63
    • 0037810930 scopus 로고    scopus 로고
    • The sulfane sulfur of persulfides is the actual substrate of the sulfur-oxidizing enzymes from Acidithiobacillus and Acidiphilium spp
    • Rohwerder T, Sand W. (2003). The sulfane sulfur of persulfides is the actual substrate of the sulfur-oxidizing enzymes from Acidithiobacillus and Acidiphilium spp. Microbiology 149: 1699-1710.
    • (2003) Microbiology , vol.149 , pp. 1699-1710
    • Rohwerder, T.1    Sand, W.2
  • 64
    • 39849083027 scopus 로고    scopus 로고
    • Comparison of ferric iron generation by different species of acidophilic bacteria immobilized in packed-bed reactors
    • Rowe OF, Johnson DB. (2008). Comparison of ferric iron generation by different species of acidophilic bacteria immobilized in packed-bed reactors. Syst Appl Microbiol 31: 68-77.
    • (2008) Syst Appl Microbiol , vol.31 , pp. 68-77
    • Rowe, O.F.1    Johnson, D.B.2
  • 65
    • 0032906223 scopus 로고    scopus 로고
    • Bacterial leaching of metal sulfides proceeds by two indirect mechanisms via thiosulfate or via polysulfides and sulfur
    • Schippers A, Sand W. (1999). Bacterial leaching of metal sulfides proceeds by two indirect mechanisms via thiosulfate or via polysulfides and sulfur. Appl Environ Microbiol 65: 319-321.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 319-321
    • Schippers, A.1    Sand, W.2
  • 66
    • 84871956840 scopus 로고    scopus 로고
    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
    • Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF. (2013). Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Res 23: 111-120.
    • (2013) Genome Res , vol.23 , pp. 111-120
    • Sharon, I.1    Morowitz, M.J.2    Thomas, B.C.3    Costello, E.K.4    Relman, D.A.5    Banfield, J.F.6
  • 67
    • 66149130975 scopus 로고    scopus 로고
    • Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column
    • Shi Y, Tyson GW, DeLong EF. (2009). Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature 459: 266-269.
    • (2009) Nature , vol.459 , pp. 266-269
    • Shi, Y.1    Tyson, G.W.2    Delong, E.F.3
  • 69
    • 79953112264 scopus 로고    scopus 로고
    • Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities
    • Stewart FJ, Sharma AK, Bryant JA, Eppley JM, DeLong EF. (2011). Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities. Genome Biol 12: R26.
    • (2011) Genome Biol , vol.12 , pp. R26
    • Stewart, F.J.1    Sharma, A.K.2    Bryant, J.A.3    Eppley, J.M.4    Delong, E.F.5
  • 70
    • 84875832926 scopus 로고    scopus 로고
    • The binning of metagenomic contigs for microbial physiology of mixed cultures
    • Strous M, Kraft B, Bisdorf R, Tegetmeyer HE. (2012). The binning of metagenomic contigs for microbial physiology of mixed cultures. Front Microbiol 3: 410.
    • (2012) Front Microbiol , vol.3 , pp. 410
    • Strous, M.1    Kraft, B.2    Bisdorf, R.3    Tegetmeyer, H.E.4
  • 71
    • 78651324347 scopus 로고    scopus 로고
    • The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
    • Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P et al. (2011). The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res 39: D561-D568.
    • (2011) Nucleic Acids Res , vol.39 , pp. D561-D568
    • Szklarczyk, D.1    Franceschini, A.2    Kuhn, M.3    Simonovic, M.4    Roth, A.5    Minguez, P.6
  • 72
    • 0006069346 scopus 로고
    • Microbial diversity: Of value to whom
    • Tiedje JM. (1994). Microbial diversity: of value to whom? ASM News 60: 524-525.
    • (1994) ASM News , vol.60 , pp. 524-525
    • Tiedje, J.M.1
  • 73
    • 1542377296 scopus 로고    scopus 로고
    • Community structure and metabolism through reconstruction of microbial genomes from the environment
    • Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM et al. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43.
    • (2004) Nature , vol.428 , pp. 37-43
    • Tyson, G.W.1    Chapman, J.2    Hugenholtz, P.3    Allen, E.E.4    Ram, R.J.5    Richardson, P.M.6
  • 74
    • 84855827446 scopus 로고    scopus 로고
    • Draft genome sequence of the extremely acidophilic biomining bacterium Acidithiobacillus thiooxidans ATCC 19377 provides insights into the evolution of the Acidithiobacillus genus
    • Valdés J, Ossandon F, Quatrini R, Dopson M, Holmes DS. (2011). Draft genome sequence of the extremely acidophilic biomining bacterium Acidithiobacillus thiooxidans ATCC 19377 provides insights into the evolution of the Acidithiobacillus genus. J Bacteriol 193: 7003-7004.
    • (2011) J Bacteriol , vol.193 , pp. 7003-7004
    • Valdés, J.1    Ossandon, F.2    Quatrini, R.3    Dopson, M.4    Holmes, D.S.5
  • 75
    • 58249113952 scopus 로고    scopus 로고
    • Acidithiobacillus ferrooxidans metabolism: From genome sequence to industrial applications
    • Valdés J, Pedroso I, Quatrini R, Dodson RJ, Tettelin H, Blake R et al. (2008). Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications. BMC Genomics 9: 597.
    • (2008) BMC Genomics , vol.9 , pp. 597
    • Valdés, J.1    Pedroso, I.2    Quatrini, R.3    Dodson, R.J.4    Tettelin, H.5    Blake, R.6
  • 77
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. (2008). Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 78
    • 77955902981 scopus 로고    scopus 로고
    • Ab initio gene identification in metagenomic sequences
    • ZhuW, Lomsadze A, Borodovsky M. (2010). Ab initio gene identification in metagenomic sequences. Nucleic Acids Res 38: e132.
    • (2010) Nucleic Acids Res , vol.38 , pp. e132
    • Zhu, W.1    Lomsadze, A.2    Borodovsky, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.