Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

Proceedings of the National Academy of Sciences of the United States of America

Volumn 109, Issue 33, 2012, Pages 13272-13277

  Pell, Jason ^a   Hintze, Arend ^a   Canino Koning, Rosangela ^a   Howe, Adina ^b   Tiedje, James M ^b,c   Brown, C Titus ^a,b  

^a Michigan State University   (United States)

^b NONE   (United States)

^c MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

Compression; Metagenomics

Indexed keywords

ARTICLE; GENE SEQUENCE; MATHEMATICAL ANALYSIS; METAGENOME; PLOTS AND CURVES; PRIORITY JOURNAL; PROBABILISTIC DE BRUIJN GRAPH;

BASE PAIRING; CHROMOSOMES, BACTERIAL; COMPUTATIONAL BIOLOGY; DNA, CIRCULAR; ESCHERICHIA COLI; GENOME, BACTERIAL; INFORMATION THEORY; METAGENOME; NONLINEAR DYNAMICS; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

EID: 84865176493     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1121464109     Document Type: Article

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