-
1
-
-
0001869836
-
16S and 23S rRNA-like primers
-
K. R. Sower and H. J. Schreier (ed.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Achenbach, L., and C. Woese. 1995. 16S and 23S rRNA-like primers, p. 521-523. In K. R. Sower and H. J. Schreier (ed.), Archaea: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1995)
Archaea: a laboratory manual
, pp. 521-523
-
-
Achenbach, L.1
Woese, C.2
-
2
-
-
33748927787
-
A molecular approach to the characterization of the eukaryotic communities of an extreme acidic environment: methods for DNA extraction and denaturing gradient gel electrophoresis analysis
-
Aguilera, A., F. Gómez, E. Lospitao, and R. Amils. 2006. A molecular approach to the characterization of the eukaryotic communities of an extreme acidic environment: methods for DNA extraction and denaturing gradient gel electrophoresis analysis. Syst. Appl. Microbiol. 29:593-605.
-
(2006)
Syst. Appl. Microbiol.
, vol.29
, pp. 593-605
-
-
Aguilera, A.1
Gómez, F.2
Lospitao, E.3
Amils, R.4
-
3
-
-
33747346997
-
Eukaryotic community distribution and its relationship to water physicochemical parameters in an extreme acidic environment, Río Tinto (southwestern Spain)
-
Aguilera, A., S. C. Manrubia, F. Gómez, N. Rodríguez, and R. Amils. 2006. Eukaryotic community distribution and its relationship to water physicochemical parameters in an extreme acidic environment, Río Tinto (southwestern Spain). Appl. Environ. Microbiol. 72:5325-5330.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5325-5330
-
-
Aguilera, A.1
Manrubia, S.C.2
Gómez, F.3
Rodríguez, N.4
Amils, R.5
-
4
-
-
33847286016
-
Development and structure of eukaryotic biofilms in an extreme acidic environment, Río Tinto (SW Spain)
-
Aguilera, A., V. Souza-Egipsy, F. Gómez, and R. Amils. 2007. Development and structure of eukaryotic biofilms in an extreme acidic environment, Río Tinto (SW Spain). Microb. Ecol. 53:294-305.
-
(2007)
Microb. Ecol.
, vol.53
, pp. 294-305
-
-
Aguilera, A.1
Souza-Egipsy, V.2
Gómez, F.3
Amils, R.4
-
5
-
-
34848920846
-
Distribution and seasonal variability in the benthic eukaryotic community of Río Tinto (SW Spain), an acidic, high metal extreme environment
-
Aguilera, A., et al. 2007. Distribution and seasonal variability in the benthic eukaryotic community of Río Tinto (SW Spain), an acidic, high metal extreme environment. Syst. Appl. Microbiol. 30:531-546.
-
(2007)
Syst. Appl. Microbiol.
, vol.30
, pp. 531-546
-
-
Aguilera, A.1
-
6
-
-
0037046556
-
Eukaryotic diversity in Spain's River of Fire
-
Amaral Zettler, L. A., et al. 2002. Eukaryotic diversity in Spain's River of Fire. Nature 417:137.
-
(2002)
Nature
, vol.417
, pp. 137
-
-
Amaral Zettler, L.A.1
-
7
-
-
0028112160
-
Structural aspects of the lichen-rock interface using back-scattered electron imaging
-
Ascaso, C., and J. Wierzchos. 1994. Structural aspects of the lichen-rock interface using back-scattered electron imaging. Bot. Acta 107:251-256.
-
(1994)
Bot. Acta
, vol.107
, pp. 251-256
-
-
Ascaso, C.1
Wierzchos, J.2
-
8
-
-
33748799671
-
New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
-
Ashelford, K. E., N. A. Chuzhanova, J. C. Fry, A. J. Jones, and A. J. Weightman. 2006. New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl. Environ. Microbiol. 72:5734-5741.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5734-5741
-
-
Ashelford, K.E.1
Chuzhanova, N.A.2
Fry, J.C.3
Jones, A.J.4
Weightman, A.J.5
-
9
-
-
0033754225
-
Comparison of acid mine drainage microbial communities in physically and geochemically distinct ecosystems
-
Bond, P. L., G. K. Druschel, and J. F. Banfield. 2000. Comparison of acid mine drainage microbial communities in physically and geochemically distinct ecosystems. Appl. Environ. Microbiol. 66:4962-4971.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4962-4971
-
-
Bond, P.L.1
Druschel, G.K.2
Banfield, J.F.3
-
11
-
-
0033694121
-
Geochemical characteristics of the acidic mine drainage in the water system in the vicinity of the Dogye coal mine in Korea
-
Chon, H. T., and J. H. Hwang. 2000. Geochemical characteristics of the acidic mine drainage in the water system in the vicinity of the Dogye coal mine in Korea. Environ. Geochem. Health 22:155-172.
-
(2000)
Environ. Geochem. Health
, vol.22
, pp. 155-172
-
-
Chon, H.T.1
Hwang, J.H.2
-
12
-
-
37349072182
-
Evidence that the potential for dissimilatory ferric iron reduction is widespread among acidophilic heterotrophic bacteria
-
Coupland, K., and D. B. Johnson. 2008. Evidence that the potential for dissimilatory ferric iron reduction is widespread among acidophilic heterotrophic bacteria. FEMS Microbiol. Lett. 279:30-35.
-
(2008)
FEMS Microbiol. Lett.
, vol.279
, pp. 30-35
-
-
Coupland, K.1
Johnson, D.B.2
-
14
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. U. S. A. 89:5685-5689.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 5685-5689
-
-
DeLong, E.F.1
-
15
-
-
0034629254
-
An archaeal iron-oxidizing extreme acidophile important in acidic mine drainage
-
Edwards, K. J., P. L. Bond, T. M. Gihring, and J. F. Banfield. 2000. An archaeal iron-oxidizing extreme acidophile important in acidic mine drainage. Science 287:1796-1798.
-
(2000)
Science
, vol.287
, pp. 1796-1798
-
-
Edwards, K.J.1
Bond, P.L.2
Gihring, T.M.3
Banfield, J.F.4
-
16
-
-
77952237533
-
-
5th ed. Tayor and Francis Group, Boca Raton, FL
-
Ehrlich, H. L., and D. K. Newman. 2009. Geomicrobiology, 5th ed. Tayor and Francis Group, Boca Raton, FL.
-
(2009)
Geomicrobiology
-
-
Ehrlich, H.L.1
Newman, D.K.2
-
17
-
-
35748965835
-
Prokaryotic community composition and ecology of floating macroscopic filaments from an extreme acidic environment, Río Tinto (SW Spain)
-
García-Moyano, A., E. Gonzalez-Toril, A. Aguilera, and R. Amils. 2007. Prokaryotic community composition and ecology of floating macroscopic filaments from an extreme acidic environment, Río Tinto (SW Spain). Syst. Appl. Microbiol. 30:601-614.
-
(2007)
Syst. Appl. Microbiol.
, vol.30
, pp. 601-614
-
-
García-Moyano, A.1
Gonzalez-Toril, E.2
Aguilera, A.3
Amils, R.4
-
18
-
-
0042029329
-
Microbial ecology of an extreme acidic environment the Tinto River
-
Gonzalez-Toril, E., E. Llobet-Brossa, E. O. Casamayor, R. Amann, and R. Amils. 2003. Microbial ecology of an extreme acidic environment, the Tinto River. Appl. Environ. Microbiol. 69:4853-4865.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 4853-4865
-
-
Gonzalez-Toril, E.1
Llobet-Brossa, E.2
Casamayor, E.O.3
Amann, R.4
Amils, R.5
-
20
-
-
40549127742
-
Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile
-
Hansel, C. M., S. Fendorf, P. M. Jardine, and C. A. Francis. 2008. Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile. Appl. Environ. Microbiol. 74:1620-1633.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 1620-1633
-
-
Hansel, C.M.1
Fendorf, S.2
Jardine, P.M.3
Francis, C.A.4
-
21
-
-
0021227370
-
The acidophilic thiobacilli and other acidophilic bacteria that share their habitat
-
Harrison, J. A. P. 1984. The acidophilic thiobacilli and other acidophilic bacteria that share their habitat. Annu. Rev. Microbiol. 38:265-292.
-
(1984)
Annu. Rev. Microbiol.
, vol.38
, pp. 265-292
-
-
Harrison, J.A.P.1
-
22
-
-
5044240973
-
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
-
Huber, T., G. Faulkner, and P. Hugenholtz. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319.
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
23
-
-
0141741231
-
The microbiology of acidic mine waters
-
Johnson, B. D., and K. B. Hallberg. 2003. The microbiology of acidic mine waters. Res. Microbiol. 154:466-473.
-
(2003)
Res. Microbiol.
, vol.154
, pp. 466-473
-
-
Johnson, B.D.1
Hallberg, K.B.2
-
24
-
-
52949105398
-
Carbon, iron and sulfur metabolism in acidophilic micro-organisms
-
Johnson, B. D., and K. B. Hallberg. 2009. Carbon, iron and sulfur metabolism in acidophilic micro-organisms. Adv. Microb. Physiol. 54:201-255.
-
(2009)
Adv. Microb. Physiol.
, vol.54
, pp. 201-255
-
-
Johnson, B.D.1
Hallberg, K.B.2
-
25
-
-
0001857117
-
16S/23S rRNA sequencing
-
E. Stackebrandt and M. Goodfellow (ed.), John Wiley & Sons, Chichester, United Kingdom
-
Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, United Kingdom.
-
(1991)
Nucleic acid techniques in bacterial systematics
, pp. 115-175
-
-
Lane, D.J.1
-
26
-
-
0004180947
-
-
Allen Press, Lawrence, KS
-
Lee, J. L., S. H. Hutner, and E. C. Bovee. 1985. An illustrated guide to the protozoa. Allen Press, Lawrence, KS.
-
(1985)
An illustrated guide to the protozoa
-
-
Lee, J.L.1
Hutner, S.H.2
Bovee, E.C.3
-
28
-
-
40949131506
-
2 affects soil microbial diversity associated with trembling aspen
-
2 affects soil microbial diversity associated with trembling aspen. Environ. Microbiol. 10:926-941.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 926-941
-
-
Lesaulnier, C.1
-
29
-
-
0034997171
-
Microbial community composition and ecology of an acidic aquatic environment: the Tinto River
-
López-Archilla, A. I., I. Marín, and R. Amils. 2001. Microbial community composition and ecology of an acidic aquatic environment: the Tinto River, Spain. Microb. Ecol. 41:20-35.
-
(2001)
Spain. Microb. Ecol.
, vol.41
, pp. 20-35
-
-
López-Archilla, A.I.1
Marín, I.2
Amils, R.3
-
30
-
-
2542523843
-
ARB: a software environmental for sequence data
-
Ludwig, W., et al. 2004. ARB: a software environmental for sequence data. Nucleic Acids Res. 32:1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
-
31
-
-
33746489404
-
Importance of the iron cycle in biohydrometallurgy
-
Malki, M., et al. 2006. Importance of the iron cycle in biohydrometallurgy. Hydrometallurgy 83:223-228.
-
(2006)
Hydrometallurgy
, vol.83
, pp. 223-228
-
-
Malki, M.1
-
32
-
-
0035319086
-
Potential of halotolerant and halophilic microorganisms for biotechnology
-
Margesin, R., and F. F. Schinner. 2001. Potential of halotolerant and halophilic microorganisms for biotechnology. Extremophiles 5:73-83.
-
(2001)
Extremophiles
, vol.5
, pp. 73-83
-
-
Margesin, R.1
Schinner, F.F.2
-
33
-
-
0003871849
-
-
Jones and Barlett Publishers, Boston, MA
-
Margulis, L., J. O. Corliss, M. Melkonian, and D. J. Chapman. 1990. Handbook of Protoctista. Jones and Barlett Publishers, Boston, MA.
-
(1990)
Handbook of Protoctista
-
-
Margulis, L.1
Corliss, J.O.2
Melkonian, M.3
Chapman, D.J.4
-
34
-
-
0033050423
-
Extremophiles as a source of novel enzymes for industrial application
-
Niehaus, F., C. Bertoldo, M. Kähler, and G. Antranikian. 1999. Extremophiles as a source of novel enzymes for industrial application. Appl. Microbiol. Biotechnol. 51:711-729.
-
(1999)
Appl. Microbiol. Biotechnol.
, vol.51
, pp. 711-729
-
-
Niehaus, F.1
Bertoldo, C.2
Kähler, M.3
Antranikian, G.4
-
35
-
-
0000902196
-
Geochemistry of acid mine waters
-
G. S. Plumlee and M. J. Logsdon (ed.), The Society of Economic Geologists, Littleton, CO
-
Nordstrom, D. K., and C. N. Alpers. 1999. Geochemistry of acid mine waters, p. 133-160. In G. S. Plumlee and M. J. Logsdon (ed.), The environmental geochemistry of mineral deposits, part A: processes, techniques, and health issues. The Society of Economic Geologists, Littleton, CO.
-
(1999)
The environmental geochemistry of mineral deposits, part A: processes, techniques, and health issues
, pp. 133-160
-
-
Nordstrom, D.K.1
Alpers, C.N.2
-
37
-
-
33847195791
-
The microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia
-
Rawlings, D. E., and D. B. Johnson. 2007. The microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia. Microbiology 153:315-324.
-
(2007)
Microbiology
, vol.153
, pp. 315-324
-
-
Rawlings, D.E.1
Johnson, D.B.2
-
38
-
-
0032931552
-
Reasons why 'Leptospirillum'-like species rather than Thiobacillus ferrooxidans are the dominant iron-oxidizing bacteria in many commercial processes for the biooxidation of pyrite and related ores
-
Rawlings, D. E., H. Tributsch, and G. S. Hansford. 1999. Reasons why 'Leptospirillum'-like species rather than Thiobacillus ferrooxidans are the dominant iron-oxidizing bacteria in many commercial processes for the biooxidation of pyrite and related ores. Microbiology 145:5-13.
-
(1999)
Microbiology
, vol.145
, pp. 5-13
-
-
Rawlings, D.E.1
Tributsch, H.2
Hansford, G.S.3
-
39
-
-
0003472291
-
-
Cambridge University Press, Cambridge, United Kingdom
-
[39] Round, F. E., R. M. Crawford, and D. G. Mann. 1990. The diatoms: biology and morphology of the genera. Cambridge University Press, Cambridge, United Kingdom.
-
(1990)
The diatoms: biology and morphology of the genera
-
-
Round, F.E.1
Crawford, R.M.2
Mann., D.G.3
-
40
-
-
34250196460
-
Microbial communities and geochemical dynamics in an extremely acidic, metal-rich stream at an abandoned sulfide mine (HuelvaSpain) underpinned by two functional primary production systems
-
Rowe, O. F., J. Sánchez España, K. B. Hallberg, and D. B. Johnson. 2007. Microbial communities and geochemical dynamics in an extremely acidic, metal-rich stream at an abandoned sulfide mine (Huelva, Spain) underpinned by two functional primary production systems. Environ. Microbiol. 9:1761-1771.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 1761-1771
-
-
Rowe, O.F.1
Sánchez España, J.2
Hallberg, K.B.3
Johnson, D.B.4
-
41
-
-
0034170458
-
Toward a molecular understanding of cold activity of enzymes from psychrophiles
-
Russell, N. J. 2000. Toward a molecular understanding of cold activity of enzymes from psychrophiles. Extremophiles 4:83-90.
-
(2000)
Extremophiles
, vol.4
, pp. 83-90
-
-
Russell, N.J.1
-
42
-
-
21344452801
-
Acid mine drainage in the Iberian Pyrite Belt (Odiel River watershed, Huelva, SW Spain): geochemistry, mineralogy and environmental implications
-
Sánchez España, J., et al. 2005. Acid mine drainage in the Iberian Pyrite Belt (Odiel River watershed, Huelva, SW Spain): geochemistry, mineralogy and environmental implications. Appl. Geochem. 20:1320-1356.
-
(2005)
Appl. Geochem.
, vol.20
, pp. 1320-1356
-
-
Sánchez España, J.1
-
43
-
-
28344444010
-
The natural attenuation of two acidic effluents in Tharsis and La Zarza-Perrunal mines (Iberian Pyrite Belt, Huelva, Spain)
-
Sánchez España, J., E. López Pamo, E. Santofimia Pastor, J. Reyes Andrés, and J. A. Martín Rubí. 2005. The natural attenuation of two acidic effluents in Tharsis and La Zarza-Perrunal mines (Iberian Pyrite Belt, Huelva, Spain). Environ. Geol. 49:253-266.
-
(2005)
Environ. Geol.
, vol.49
, pp. 253-266
-
-
Sánchez España, J.1
López Pamo, E.2
Santofimia Pastor, E.3
Reyes Andrés, J.4
MartínRubí, J.A.5
-
44
-
-
33845957362
-
The oxidation of ferrous iron in acidic mine effluents from the Iberian Pyrite Belt (Odiel Basin, HuelvaSpain): field and laboratory rates
-
Sánchez España, J., E. López-Pamo, E. Santofimia, J. Reyes, and J. A. Martín Rubí. 2007. The oxidation of ferrous iron in acidic mine effluents from the Iberian Pyrite Belt (Odiel Basin, Huelva, Spain): field and laboratory rates. J. Geochem. Explor. 92:120-132.
-
(2007)
J. Geochem. Explor.
, vol.92
, pp. 120-132
-
-
Sánchez España, J.1
López-Pamo, E.2
Santofimia, E.3
Reyes, J.4
MartínRubí, J.A.5
-
45
-
-
42249113138
-
Iron terraces in acid mine drainage systems: a discussion about the organic and inorganic factors involved in their formation through observations from the Tintillo acidic river (Riotinto mine, HuelvaSpain)
-
Sánchez España, J., E. Santofimia, and E. López-Pamo. 2007. Iron terraces in acid mine drainage systems: a discussion about the organic and inorganic factors involved in their formation through observations from the Tintillo acidic river (Riotinto mine, Huelva, Spain). Geosphere 3:133-151.
-
(2007)
Geosphere
, vol.3
, pp. 133-151
-
-
Sánchez España, J.1
Santofimia, E.2
López-Pamo., E.3
-
46
-
-
0026530784
-
Evaluation of Leptospirillum ferrooxidans for leaching
-
Sand, W., K. Rohde, B. Sobotke, and C. Zenneck. 1992. Evaluation of Leptospirillum ferrooxidans for leaching. Appl. Environ. Microbiol. 58:85-92.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 85-92
-
-
Sand, W.1
Rohde, K.2
Sobotke, B.3
Zenneck, C.4
-
47
-
-
0032489630
-
Distribution of Thiobacillus ferrooxidans and Leptospirillum ferrooxidans: implications for generation of acid mine drainage
-
Schrenk, M. O., K. J. Edwards, R. M. Goodman, R. J. Hamers, and J. F. Banfield. 1998. Distribution of Thiobacillus ferrooxidans and Leptospirillum ferrooxidans: implications for generation of acid mine drainage. Science 279:1519-1522.
-
(1998)
Science
, vol.279
, pp. 1519-1522
-
-
Schrenk, M.O.1
Edwards, K.J.2
Goodman, R.M.3
Hamers, R.J.4
Banfield, J.F.5
-
48
-
-
0031680625
-
Do bacteria mediate algal colonization in iron-enriched streams?
-
Sheldon, S. P., and T. A. Wellnitz. 1998. Do bacteria mediate algal colonization in iron-enriched streams? OIKOS 83:85-92.
-
(1998)
OIKOS
, vol.83
, pp. 85-92
-
-
Sheldon, S.P.1
Wellnitz, T.A.2
-
49
-
-
63149108582
-
Prokaryotic community structure in algal photosynthetic biofilms from extreme acidic streams in Río Tinto (Huelva Spain)
-
Souza-Egipsy, V., et al. 2008. Prokaryotic community structure in algal photosynthetic biofilms from extreme acidic streams in Río Tinto (Huelva, Spain). Int. Microbiol. 11:251-260.
-
(2008)
Int. Microbiol.
, vol.11
, pp. 251-260
-
-
Souza-Egipsy, V.1
-
51
-
-
0030883737
-
A 120year record of widespread contamination from mining of the Iberian Pyrite Belt
-
van Geen, A., J. F. Adkins, E. A. Boyle, C. H. Nelson, and A. Palenques. 1997. A 120-year record of widespread contamination from mining of the Iberian Pyrite Belt. Geology 25:291-294.
-
(1997)
Geology
, vol.25
, pp. 291-294
-
-
van Geen, A.1
Adkins, J.F.2
Boyle, E.A.3
Nelson, C.H.4
Palenques, A.5
-
52
-
-
36849013617
-
Characterization of neutrophilic Fe(II)-oxidizing bacteria isolated from the rhizosphere of wetland plants and description of Ferritrophicum radicicola gen. nov. sp. nov. and Sideroxydans paludicola sp. nov
-
Weiss, J., et al. 2007. Characterization of neutrophilic Fe(II)-oxidizing bacteria isolated from the rhizosphere of wetland plants and description of Ferritrophicum radicicola gen. nov. sp. nov. and Sideroxydans paludicola sp. nov. Geomicrobiol. J. 24:559-570.
-
(2007)
Geomicrobiol. J.
, vol.24
, pp. 559-570
-
-
Weiss, J.1
-
53
-
-
0028995459
-
The effect of iron and manganese colonization on diatom colonization in a Vermont stream
-
Wellnitz, T. A., and S. P. Sheldon. 1995. The effect of iron and manganese colonization on diatom colonization in a Vermont stream. Freshwater Biol. 34:465-470.
-
(1995)
Freshwater Biol
, vol.34
, pp. 465-470
-
-
Wellnitz, T.A.1
Sheldon, S.P.2
-
54
-
-
0028000843
-
Application of back-scattered electron imaging to the study of the lichen-rock interface
-
Wierzchos, J., and C. Ascaso. 1994. Application of back-scattered electron imaging to the study of the lichen-rock interface. J. Microsc. 175:54-59.
-
(1994)
J. Microsc.
, vol.175
, pp. 54-59
-
-
Wierzchos, J.1
Ascaso, C.2
|