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Volumn 52, Issue 1, 2013, Pages 25-36

Distinct properties of cell-type-specific and shared transcription factor binding sites

Author keywords

[No Author keywords available]

Indexed keywords

ESTROGEN RECEPTOR ALPHA; GLUCOCORTICOID RECEPTOR; HEPATOCYTE NUCLEAR FACTOR 3ALPHA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR ETV4; TRANSCRIPTION FACTOR GATA 3; UNCLASSIFIED DRUG;

EID: 84885376679     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2013.08.037     Document Type: Article
Times cited : (261)

References (44)
  • 1
    • 84858997469 scopus 로고    scopus 로고
    • Forkhead box transcription factor, forkhead box A1, shows negative association with lymph node status in endometrial cancer, and represses cell proliferation and migration of endometrial cancer cells
    • Abe Y., Ijichi N., Ikeda K., Kayano H., Horie-Inoue K., Takeda S., Inoue S. Forkhead box transcription factor, forkhead box A1, shows negative association with lymph node status in endometrial cancer, and represses cell proliferation and migration of endometrial cancer cells. Cancer Sci. 2012, 103:806-812.
    • (2012) Cancer Sci. , vol.103 , pp. 806-812
    • Abe, Y.1    Ijichi, N.2    Ikeda, K.3    Kayano, H.4    Horie-Inoue, K.5    Takeda, S.6    Inoue, S.7
  • 7
    • 22244452677 scopus 로고    scopus 로고
    • Distribution and intensity of constraint in mammalian genomic sequence
    • NISC Comparative Sequencing Program
    • Cooper G.M., Stone E.A., Asimenos G., Green E.D., Batzoglou S., Sidow A. Distribution and intensity of constraint in mammalian genomic sequence. Genome Res. 2005, 15:901-913. NISC Comparative Sequencing Program.
    • (2005) Genome Res. , vol.15 , pp. 901-913
    • Cooper, G.M.1    Stone, E.A.2    Asimenos, G.3    Green, E.D.4    Batzoglou, S.5    Sidow, A.6
  • 8
    • 78651237647 scopus 로고    scopus 로고
    • Identifying a high fraction of the human genome to be under selective constraint using GERP++
    • Davydov E.V., Goode D.L., Sirota M., Cooper G.M., Sidow A., Batzoglou S. Identifying a high fraction of the human genome to be under selective constraint using GERP++. PLoS Comput. Biol. 2010, 6:e1001025. 10.1371/journal.pcbi.1001025.
    • (2010) PLoS Comput. Biol. , vol.6
    • Davydov, E.V.1    Goode, D.L.2    Sirota, M.3    Cooper, G.M.4    Sidow, A.5    Batzoglou, S.6
  • 9
    • 79955550445 scopus 로고    scopus 로고
    • A user's guide to the encyclopedia ofDNA elements (ENCODE)
    • ENCODE Project Consortium
    • A user's guide to the encyclopedia ofDNA elements (ENCODE). PLoS Biol. 2011, 9:e1001046. ENCODE Project Consortium. 10.1371/journal.pbio.1001046.
    • (2011) PLoS Biol. , vol.9
  • 10
    • 60749132828 scopus 로고    scopus 로고
    • Environment-specific combinatorial cis-regulation in synthetic promoters
    • Gertz J., Cohen B.A. Environment-specific combinatorial cis-regulation in synthetic promoters. Mol. Syst. Biol. 2009, 5:244.
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 244
    • Gertz, J.1    Cohen, B.A.2
  • 11
    • 58149354385 scopus 로고    scopus 로고
    • Analysis of combinatorial cis-regulation in synthetic and genomic promoters
    • Gertz J., Siggia E.D., Cohen B.A. Analysis of combinatorial cis-regulation in synthetic and genomic promoters. Nature 2009, 457:215-218.
    • (2009) Nature , vol.457 , pp. 215-218
    • Gertz, J.1    Siggia, E.D.2    Cohen, B.A.3
  • 13
    • 84868324642 scopus 로고    scopus 로고
    • Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner
    • Gertz J., Reddy T.E., Varley K.E., Garabedian M.J., Myers R.M. Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner. Genome Res. 2012, 22:2153-2162.
    • (2012) Genome Res. , vol.22 , pp. 2153-2162
    • Gertz, J.1    Reddy, T.E.2    Varley, K.E.3    Garabedian, M.J.4    Myers, R.M.5
  • 14
    • 78049440475 scopus 로고    scopus 로고
    • Chromatin landscape dictates HSF binding to target DNA elements
    • Guertin M.J., Lis J.T. Chromatin landscape dictates HSF binding to target DNA elements. PLoS Genet. 2010, 6:e1001114. 10.1371/journal.pgen.1001114.
    • (2010) PLoS Genet. , vol.6
    • Guertin, M.J.1    Lis, J.T.2
  • 15
    • 84861889354 scopus 로고    scopus 로고
    • Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics
    • He H.H., Meyer C.A., Chen M.W., Jordan V.C., Brown M., Liu X.S. Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics. Genome Res. 2012, 22:1015-1025.
    • (2012) Genome Res. , vol.22 , pp. 1015-1025
    • He, H.H.1    Meyer, C.A.2    Chen, M.W.3    Jordan, V.C.4    Brown, M.5    Liu, X.S.6
  • 17
    • 79953765128 scopus 로고    scopus 로고
    • Multiple sequence-specific DNA-binding proteins mediate estrogen receptor signaling through a tethering pathway
    • Heldring N., Isaacs G.D., Diehl A.G., Sun M., Cheung E., Ranish J.A., Kraus W.L. Multiple sequence-specific DNA-binding proteins mediate estrogen receptor signaling through a tethering pathway. Mol. Endocrinol. 2011, 25:564-574.
    • (2011) Mol. Endocrinol. , vol.25 , pp. 564-574
    • Heldring, N.1    Isaacs, G.D.2    Diehl, A.G.3    Sun, M.4    Cheung, E.5    Ranish, J.A.6    Kraus, W.L.7
  • 18
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz G.Z., Stormo G.D. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 1999, 15:563-577.
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 19
    • 84860364951 scopus 로고    scopus 로고
    • Research resource: whole-genome estrogen receptor alpha binding in mouse uterine tissue revealed by ChIP-seq
    • Hewitt S.C., Li L., Grimm S.A., Chen Y., Liu L., Li Y., Bushel P.R., Fargo D., Korach K.S. Research resource: whole-genome estrogen receptor alpha binding in mouse uterine tissue revealed by ChIP-seq. Mol. Endocrinol. 2012, 26:887-898.
    • (2012) Mol. Endocrinol. , vol.26 , pp. 887-898
    • Hewitt, S.C.1    Li, L.2    Grimm, S.A.3    Chen, Y.4    Liu, L.5    Li, Y.6    Bushel, P.R.7    Fargo, D.8    Korach, K.S.9
  • 20
    • 78651250284 scopus 로고    scopus 로고
    • FOXA1 is a key determinant of estrogen receptor function and endocrine response
    • Hurtado A., Holmes K.A., Ross-Innes C.S., Schmidt D., Carroll J.S. FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nat. Genet. 2011, 43:27-33.
    • (2011) Nat. Genet. , vol.43 , pp. 27-33
    • Hurtado, A.1    Holmes, K.A.2    Ross-Innes, C.S.3    Schmidt, D.4    Carroll, J.S.5
  • 23
    • 0037086537 scopus 로고    scopus 로고
    • GAL4 directs nucleosome sliding induced by NURF
    • Kang J.G., Hamiche A., Wu C. GAL4 directs nucleosome sliding induced by NURF. EMBO J. 2002, 21:1406-1413.
    • (2002) EMBO J. , vol.21 , pp. 1406-1413
    • Kang, J.G.1    Hamiche, A.2    Wu, C.3
  • 24
    • 80052398200 scopus 로고    scopus 로고
    • Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state
    • Kong S.L., Li G., Loh S.L., Sung W.K., Liu E.T. Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state. Mol. Syst. Biol. 2011, 7:526.
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 526
    • Kong, S.L.1    Li, G.2    Loh, S.L.3    Sung, W.K.4    Liu, E.T.5
  • 32
  • 34
    • 84883785026 scopus 로고    scopus 로고
    • Mapping genome-wide transcription factor binding sites in frozen tissues
    • Published online September 16, 2013
    • Savic D., Gertz J., Jain P., Cooper G.M., Myers R.M. Mapping genome-wide transcription factor binding sites in frozen tissues. Epigenetics Chromatin 2013, 6. Published online September 16, 2013. 10.1186/1756-8935-6-30.
    • (2013) Epigenetics Chromatin , vol.6
    • Savic, D.1    Gertz, J.2    Jain, P.3    Cooper, G.M.4    Myers, R.M.5
  • 35
    • 0022429106 scopus 로고
    • The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation
    • Shea M.A., Ackers G.K. The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation. J.Mol. Biol. 1985, 181:211-230.
    • (1985) J.Mol. Biol. , vol.181 , pp. 211-230
    • Shea, M.A.1    Ackers, G.K.2
  • 36
    • 84855250676 scopus 로고    scopus 로고
    • Research resource: enhanced genome-wide occupancy of estrogenreceptor alpha by the cochaperone p23 in breast cancer cells
    • Simpson N.E., Gertz J., Imberg K., Myers R.M., Garabedian M.J. Research resource: enhanced genome-wide occupancy of estrogenreceptor alpha by the cochaperone p23 in breast cancer cells. Mol. Endocrinol. 2012, 26:194-202.
    • (2012) Mol. Endocrinol. , vol.26 , pp. 194-202
    • Simpson, N.E.1    Gertz, J.2    Imberg, K.3    Myers, R.M.4    Garabedian, M.J.5
  • 37
    • 77956276383 scopus 로고    scopus 로고
    • DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells
    • pdb.prot5384
    • Song L., Crawford G.E. DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells. Cold Spring Harb. Protoc. 2010, pdb.prot5384. 10.1101/pdb.prot5384.
    • (2010) Cold Spring Harb. Protoc.
    • Song, L.1    Crawford, G.E.2
  • 39
    • 77955629953 scopus 로고    scopus 로고
    • Genome-wide analysis of estrogen receptor alpha DNA binding and tethering mechanisms identifies Runx1 as a novel tethering factor in receptor-mediated transcriptional activation
    • Stender J.D., Kim K., Charn T.H., Komm B., Chang K.C., Kraus W.L., Benner C., Glass C.K., Katzenellenbogen B.S. Genome-wide analysis of estrogen receptor alpha DNA binding and tethering mechanisms identifies Runx1 as a novel tethering factor in receptor-mediated transcriptional activation. Mol. Cell. Biol. 2010, 30:3943-3955.
    • (2010) Mol. Cell. Biol. , vol.30 , pp. 3943-3955
    • Stender, J.D.1    Kim, K.2    Charn, T.H.3    Komm, B.4    Chang, K.C.5    Kraus, W.L.6    Benner, C.7    Glass, C.K.8    Katzenellenbogen, B.S.9
  • 44
    • 32544450941 scopus 로고    scopus 로고
    • Role of estrogen in regulation of cellular differentiation: a study using human placental andrat Leydig cells
    • Yashwanth R., Rama S., Anbalagan M., Rao A.J. Role of estrogen in regulation of cellular differentiation: a study using human placental andrat Leydig cells. Mol. Cell. Endocrinol. 2006, 246:114-120.
    • (2006) Mol. Cell. Endocrinol. , vol.246 , pp. 114-120
    • Yashwanth, R.1    Rama, S.2    Anbalagan, M.3    Rao, A.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.