-
1
-
-
33745626459
-
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
-
Alexa A, Rahnenführer J, Lengauer T, (2006) Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics, 22, 1600-1607.
-
(2006)
Bioinformatics
, vol.22
, pp. 1600-1607
-
-
Alexa, A.1
Rahnenführer, J.2
Lengauer, T.3
-
3
-
-
54149092976
-
Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years
-
Barker MS, Kane NC, Matvienko M, et al,. (2008) Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Molecular Biology and Evolution, 25, 2445-2455.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 2445-2455
-
-
Barker, M.S.1
Kane, N.C.2
Matvienko, M.3
-
4
-
-
0001326108
-
Isozyme variation in colonizing plants
-
(eds Soltis D. Soltis P.), Dioscorides Press, Portland, Oregon.
-
Barrett SCH, Shore JS, (1989) Isozyme variation in colonizing plants. In: Isozymes in Plant Biology (eds, Soltis D, Soltis P,), pp. 106-126. Dioscorides Press, Portland, Oregon.
-
(1989)
Isozymes in Plant Biology
, pp. 106-126
-
-
Barrett, S.C.H.1
Shore, J.S.2
-
5
-
-
84864398902
-
Major role of positive selection in the evolution of conservative segments of Drosophila proteins
-
Bazykin GA, Kondrashov AS, (2012) Major role of positive selection in the evolution of conservative segments of Drosophila proteins. Proceedings of the Royal Society B, 279, 3409-3417.
-
(2012)
Proceedings of the Royal Society B
, vol.279
, pp. 3409-3417
-
-
Bazykin, G.A.1
Kondrashov, A.S.2
-
6
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y, (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society: Series B, 57, 289-300.
-
(1995)
Journal of the Royal Statistical Society: Series B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
7
-
-
0035933527
-
Evolutionary dynamics of plant R-genes
-
Bergelson J, Kreitman M, Stahl EA, Tian D, (2001) Evolutionary dynamics of plant R-genes. Science, 292, 2281-2285.
-
(2001)
Science
, vol.292
, pp. 2281-2285
-
-
Bergelson, J.1
Kreitman, M.2
Stahl, E.A.3
Tian, D.4
-
8
-
-
77954263280
-
Hybridization and invasion: One of North America's most devastating invasive plants shows evidence for a history of interspecific hybridization
-
Blair AC, Hufbauer RA, (2010) Hybridization and invasion: one of North America's most devastating invasive plants shows evidence for a history of interspecific hybridization. Evolutionary Applications, 3, 40-51.
-
(2010)
Evolutionary Applications
, vol.3
, pp. 40-51
-
-
Blair, A.C.1
Hufbauer, R.A.2
-
9
-
-
18244402870
-
Phenotypic and genetic differentiation between native and introduced plant populations
-
Bossdorf O, Auge H, Lafuma L, et al,. (2005) Phenotypic and genetic differentiation between native and introduced plant populations. Oecologia, 144, 1-11.
-
(2005)
Oecologia
, vol.144
, pp. 1-11
-
-
Bossdorf, O.1
Auge, H.2
Lafuma, L.3
-
10
-
-
57349187789
-
Reducing redundancy in invasion ecology by integrating hypotheses into a single theoretical framework
-
Catford JA, Jansson R, Nilsson C, (2009) Reducing redundancy in invasion ecology by integrating hypotheses into a single theoretical framework. Diversity and Distributions, 15, 22-40.
-
(2009)
Diversity and Distributions
, vol.15
, pp. 22-40
-
-
Catford, J.A.1
Jansson, R.2
Nilsson, C.3
-
11
-
-
85016928151
-
Taxize: Taxonomic search and retrieval in R [v2; Ref status: Indexed
-
Chamberlain SA, Szöcs E, (2013) Taxize: taxonomic search and retrieval in R [v2; ref status: indexed, http://f1000r.es/24v ]. F1000Research, 191, 1-28.
-
(2013)
F1000Research
, vol.191
, pp. 1-28
-
-
Chamberlain, S.A.1
Szöcs, E.2
-
12
-
-
84865593457
-
Evidence of selection on fatty acid biosynthetic genes during the evolution of cultivated sunflower
-
Chapman MA, Burke JM, (2012) Evidence of selection on fatty acid biosynthetic genes during the evolution of cultivated sunflower. Theoretical and Applied Genetics, 125, 897-907.
-
(2012)
Theoretical and Applied Genetics
, vol.125
, pp. 897-907
-
-
Chapman, M.A.1
Burke, J.M.2
-
13
-
-
84890333646
-
Genomic divergence during speciation driven by adaptation to altitude
-
Chapman MA, Hiscock SJ, Filatov DA, (2013) Genomic divergence during speciation driven by adaptation to altitude. Molecular Biology and Evolution, 30, 2553-2567.
-
(2013)
Molecular Biology and Evolution
, vol.30
, pp. 2553-2567
-
-
Chapman, M.A.1
Hiscock, S.J.2
Filatov, D.A.3
-
14
-
-
84867301515
-
Predicting the functional effect of amino acid substitutions and indels
-
Choi Y, Sims GE, Murphy S, Miller JR, Chan AP, (2012) Predicting the functional effect of amino acid substitutions and indels. PLoS ONE, 7, e46688.
-
(2012)
PLoS ONE
, vol.7
, pp. e46688
-
-
Choi, Y.1
Sims, G.E.2
Murphy, S.3
Miller, J.R.4
Chan, A.P.5
-
15
-
-
77949336179
-
Gene flow and population admixture as the primary post-invasion processes in common ragweed (Ambrosia artemisiifolia) populations in France
-
Chun YJ, Fumanal B, Laitung B, Bretagnolle F, (2010) Gene flow and population admixture as the primary post-invasion processes in common ragweed (Ambrosia artemisiifolia) populations in France. The New Phytologist, 185, 1100-1107.
-
(2010)
The New Phytologist
, vol.185
, pp. 1100-1107
-
-
Chun, Y.J.1
Fumanal, B.2
Laitung, B.3
Bretagnolle, F.4
-
16
-
-
32544445408
-
Evolution of reproductive proteins from animals and plants
-
Clark NL, Aagaard JE, Swanson WJ, (2006) Evolution of reproductive proteins from animals and plants. Reproduction, 131, 11-22.
-
(2006)
Reproduction
, vol.131
, pp. 11-22
-
-
Clark, N.L.1
Aagaard, J.E.2
Swanson, W.J.3
-
17
-
-
84885765510
-
Rapid adaptation to climate facilitates range expansion of an invasive plant
-
Colautti RI, Barrett SCH, (2013) Rapid adaptation to climate facilitates range expansion of an invasive plant. Science, 342, 364-366.
-
(2013)
Science
, vol.342
, pp. 364-366
-
-
Colautti, R.I.1
Barrett, S.C.H.2
-
18
-
-
67650944249
-
Common garden comparisons of native and introduced plant populations: Latitudinal clines can obscure evolutionary inferences
-
Colautti RI, Maron JL, Barrett SCH, (2009) Common garden comparisons of native and introduced plant populations: latitudinal clines can obscure evolutionary inferences. Evolutionary Applications, 2, 187-199.
-
(2009)
Evolutionary Applications
, vol.2
, pp. 187-199
-
-
Colautti, R.I.1
Maron, J.L.2
Barrett, S.C.H.3
-
19
-
-
84874591570
-
The absence of eukaryotic initiation factor eIF(iso)4E affects the systemic spread of a Tobacco etch virus isolate in Arabidopsis thaliana
-
Contreras-Paredes CA, Silva-Rosales L, Daròs J-A, Alejandri-Ramírez ND, Dinkova TD, (2013) The absence of eukaryotic initiation factor eIF(iso)4E affects the systemic spread of a Tobacco etch virus isolate in Arabidopsis thaliana. Molecular Plant-Microbe Interactions: MPMI, 26, 461-470.
-
(2013)
Molecular Plant-Microbe Interactions: MPMI
, vol.26
, pp. 461-470
-
-
Contreras-Paredes, C.A.1
Silva-Rosales, L.2
Daròs, J.-A.3
Alejandri-Ramírez, N.D.4
Dinkova, T.D.5
-
20
-
-
84864453108
-
JModelTest 2: More models, new heuristics and parallel computing
-
Darriba D, Taboada GL, Doallo R, Posada D, (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9, 772.
-
(2012)
Nature Methods
, vol.9
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
21
-
-
84886303588
-
Deciphering the evolution of herbicide resistance in weeds
-
Délye C, Jasieniuk M, Le Corre V, (2013) Deciphering the evolution of herbicide resistance in weeds. Trends in Genetics: TIG, 29, 649-658.
-
(2013)
Trends in Genetics: TIG
, vol.29
, pp. 649-658
-
-
Délye, C.1
Jasieniuk, M.2
Le Corre, V.3
-
22
-
-
37349067917
-
Founding events in species invasions: Genetic variation, adaptive evolution, and the role of multiple introductions
-
Dlugosch KM, Parker IM, (2008) Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions. Molecular Ecology, 17, 431-449.
-
(2008)
Molecular Ecology
, vol.17
, pp. 431-449
-
-
Dlugosch, K.M.1
Parker, I.M.2
-
23
-
-
84970577941
-
Genetic structure of natural populations of wild sunflowers (Helianthus annuus L.) in Australia
-
Dry PJ, Burdon JJ, (1986) Genetic structure of natural populations of wild sunflowers (Helianthus annuus L.) in Australia. Australian Journal of Biological Sciences, 39, 255-270.
-
(1986)
Australian Journal of Biological Sciences
, vol.39
, pp. 255-270
-
-
Dry, P.J.1
Burdon, J.J.2
-
24
-
-
84928589747
-
-
Encyclopedia of Life [EOL] Available from. Accessed 13 Sept 2014
-
Encyclopedia of Life [EOL] (2014) "Invasive Species Comprehensive List". Available from http://eol.org/collections/55367. Accessed 13 Sept 2014.
-
(2014)
Invasive Species Comprehensive List
-
-
-
25
-
-
84862523606
-
Morphological differentiation in a common garden experiment among native and non-native specimens of the invasive weed yellow starthistle (Centaurea solstitialis)
-
Eriksen RL, Desronvil T, Hierro JL, Kesseli R, (2012) Morphological differentiation in a common garden experiment among native and non-native specimens of the invasive weed yellow starthistle (Centaurea solstitialis). Biological Invasions, 14, 1459-1467.
-
(2012)
Biological Invasions
, vol.14
, pp. 1459-1467
-
-
Eriksen, R.L.1
Desronvil, T.2
Hierro, J.L.3
Kesseli, R.4
-
26
-
-
0033020734
-
EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases
-
Falk A, Feys BJ, Frost LN, et al,. (1999) EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases. Proceedings of the National Academy of Sciences, USA, 96, 3292-3297.
-
(1999)
Proceedings of the National Academy of Sciences, USA
, vol.96
, pp. 3292-3297
-
-
Falk, A.1
Feys, B.J.2
Frost, L.N.3
-
27
-
-
77957233773
-
The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection
-
Fletcher W, Yang Z, (2010) The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection. Molecular Biology and Evolution, 27, 2257-2267.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 2257-2267
-
-
Fletcher, W.1
Yang, Z.2
-
28
-
-
84870431038
-
CD-HIT: Accelerated for clustering the next-generation sequencing data
-
Fu L, Niu B, Zhu Z, Wu S, Li W, (2012) CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics, 28, 3150-3152.
-
(2012)
Bioinformatics
, vol.28
, pp. 3150-3152
-
-
Fu, L.1
Niu, B.2
Zhu, Z.3
Wu, S.4
Li, W.5
-
29
-
-
79952166885
-
Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution
-
Fujii S, Bond CS, Small ID, (2011) Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution. Proceedings of the National Academy of Sciences, USA, 108, 1723-1728.
-
(2011)
Proceedings of the National Academy of Sciences, USA
, vol.108
, pp. 1723-1728
-
-
Fujii, S.1
Bond, C.S.2
Small, I.D.3
-
30
-
-
53249142139
-
Identification of an Arabidopsis thaliana protein that binds to tomato mosaic virus genomic RNA and inhibits its multiplication
-
Fujisaki K, Ishikawa M, (2008) Identification of an Arabidopsis thaliana protein that binds to tomato mosaic virus genomic RNA and inhibits its multiplication. Virology, 380, 402-411.
-
(2008)
Virology
, vol.380
, pp. 402-411
-
-
Fujisaki, K.1
Ishikawa, M.2
-
31
-
-
17444405158
-
Everywhere but Antarctica: Using a supertree to understand the diversity and distribution of the Compositae
-
Funk VA, Bayer RJ, Keeley S, et al,. (2005) Everywhere but Antarctica: using a supertree to understand the diversity and distribution of the Compositae. Biologiske Skrifter, 55, 343-373.
-
(2005)
Biologiske Skrifter
, vol.55
, pp. 343-373
-
-
Funk, V.A.1
Bayer, R.J.2
Keeley, S.3
-
32
-
-
79960940989
-
Sporophytic and gametophytic functions of the cell cycle-associated Mob1 gene in Arabidopsis thaliana L
-
Galla G, Zenoni S, Marconi G, et al,. (2011) Sporophytic and gametophytic functions of the cell cycle-associated Mob1 gene in Arabidopsis thaliana L. Gene, 484, 1-12.
-
(2011)
Gene
, vol.484
, pp. 1-12
-
-
Galla, G.1
Zenoni, S.2
Marconi, G.3
-
33
-
-
7044233634
-
The potyvirus recessive resistance gene, sbm1, identifies a novel role for translation initiation factor eIF4E in cell-to-cell trafficking
-
Gao Z, Johansen E, Eyers S, et al,. (2004) The potyvirus recessive resistance gene, sbm1, identifies a novel role for translation initiation factor eIF4E in cell-to-cell trafficking. The Plant Journal, 40, 376-385.
-
(2004)
The Plant Journal
, vol.40
, pp. 376-385
-
-
Gao, Z.1
Johansen, E.2
Eyers, S.3
-
34
-
-
79952497584
-
Nuclear and chloroplast microsatellites show multiple introductions in the worldwide invasion history of common ragweed, Ambrosia artemisiifolia
-
Gaudeul M, Giraud T, Kiss L, Shykoff JA, (2011) Nuclear and chloroplast microsatellites show multiple introductions in the worldwide invasion history of common ragweed, Ambrosia artemisiifolia. PLoS ONE, 6, e17658.
-
(2011)
PLoS ONE
, vol.6
, pp. e17658
-
-
Gaudeul, M.1
Giraud, T.2
Kiss, L.3
Shykoff, J.A.4
-
35
-
-
84928589508
-
-
Global Invasive Species Database [GISD] Available from. Accessed 13 September 2014.
-
Global Invasive Species Database [GISD] (2014) 100 of the world's worst invasive alien species. Available from http://www.issg.org/database/species/search.asp?st=100ss&fr=1&str=&lang=EN. Accessed 13 September 2014.
-
(2014)
100 of the World's Worst Invasive Alien Species
-
-
-
37
-
-
36448946146
-
Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis
-
Grossmann S, Bauer S, Robinson PN, Vingron M, (2007) Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis. Bioinformatics, 23, 3024-3031.
-
(2007)
Bioinformatics
, vol.23
, pp. 3024-3031
-
-
Grossmann, S.1
Bauer, S.2
Robinson, P.N.3
Vingron, M.4
-
38
-
-
84866313896
-
Invasion history of North American Canada thistle, Cirsium arvense
-
Guggisberg A, Welk E, Sforza R, et al,. (2012) Invasion history of North American Canada thistle, Cirsium arvense. Journal of Biogeography, 39, 1919-1931.
-
(2012)
Journal of Biogeography
, vol.39
, pp. 1919-1931
-
-
Guggisberg, A.1
Welk, E.2
Sforza, R.3
-
39
-
-
84879695899
-
Transcriptome divergence between introduced and native populations of Canada thistle, Cirsium arvense
-
Guggisberg A, Lai Z, Huang J, Rieseberg LH, (2013) Transcriptome divergence between introduced and native populations of Canada thistle, Cirsium arvense. The New Phytologist, 199, 595-608.
-
(2013)
The New Phytologist
, vol.199
, pp. 595-608
-
-
Guggisberg, A.1
Lai, Z.2
Huang, J.3
Rieseberg, L.H.4
-
40
-
-
4444357279
-
Modeling the site-specific variation of selection patterns along lineages
-
Guindon S, Rodrigo AG, Dyer KA, Huelsenbeck JP, (2004) Modeling the site-specific variation of selection patterns along lineages. Proceedings of the National Academy of Sciences, USA, 101, 12957-12962.
-
(2004)
Proceedings of the National Academy of Sciences, USA
, vol.101
, pp. 12957-12962
-
-
Guindon, S.1
Rodrigo, A.G.2
Dyer, K.A.3
Huelsenbeck, J.P.4
-
41
-
-
84880266648
-
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
-
Haas BJ, Papanicolaou A, Yassour M, et al,. (2013) De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nature Protocols, 8, 1494-1512.
-
(2013)
Nature Protocols
, vol.8
, pp. 1494-1512
-
-
Haas, B.J.1
Papanicolaou, A.2
Yassour, M.3
-
42
-
-
67749086235
-
Over-expression of CONSTANS-LIKE 5 can induce flowering in short-day grown Arabidopsis
-
Hassidim M, Harir Y, Yakir E, Kron I, Green RM, (2009) Over-expression of CONSTANS-LIKE 5 can induce flowering in short-day grown Arabidopsis. Planta, 230, 481-491.
-
(2009)
Planta
, vol.230
, pp. 481-491
-
-
Hassidim, M.1
Harir, Y.2
Yakir, E.3
Kron, I.4
Green, R.M.5
-
43
-
-
81155131789
-
Genetic differentiation in life-history traits of introduced and native common ragweed (Ambrosia artemisiifolia) populations
-
Hodgins KA, Rieseberg L, (2011) Genetic differentiation in life-history traits of introduced and native common ragweed (Ambrosia artemisiifolia) populations. Journal of Evolutionary Biology, 24, 2731-2749.
-
(2011)
Journal of Evolutionary Biology
, vol.24
, pp. 2731-2749
-
-
Hodgins, K.A.1
Rieseberg, L.2
-
44
-
-
84876693716
-
The molecular basis of invasiveness: Differences in gene expression of native and introduced common ragweed (Ambrosia artemisiifolia) in stressful and benign environments
-
Hodgins KA, Lai Z, Nurkowski K, Huang J, Rieseberg LH, (2013a) The molecular basis of invasiveness: differences in gene expression of native and introduced common ragweed (Ambrosia artemisiifolia) in stressful and benign environments. Molecular Ecology, 22, 2496-2510.
-
(2013)
Molecular Ecology
, vol.22
, pp. 2496-2510
-
-
Hodgins, K.A.1
Lai, Z.2
Nurkowski, K.3
Huang, J.4
Rieseberg, L.H.5
-
45
-
-
84890147590
-
Genomics of Compositae crops: Reference transcriptome assemblies and evidence of hybridization with wild relatives
-
Hodgins KA, Lai Z, Oliveira LO, et al,. (2013b) Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives. Molecular Ecology Resources, 14, 166-177.
-
(2013)
Molecular Ecology Resources
, vol.14
, pp. 166-177
-
-
Hodgins, K.A.1
Lai, Z.2
Oliveira, L.O.3
-
46
-
-
84883617990
-
Taxonomic and life history bias in herbicide resistant weeds: Implications for deployment of resistant crops
-
Holt JS, Welles SR, Silvera K, et al,. (2013) Taxonomic and life history bias in herbicide resistant weeds: implications for deployment of resistant crops. PLoS ONE, 8, e71916.
-
(2013)
PLoS ONE
, vol.8
, pp. e71916
-
-
Holt, J.S.1
Welles, S.R.2
Silvera, K.3
-
47
-
-
0031277694
-
Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: Interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways
-
Ishitani M, Xiong L, Stevenson B, Zhu JK, (1997) Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways. The Plant Cell, 9, 1935-1949.
-
(1997)
The Plant Cell
, vol.9
, pp. 1935-1949
-
-
Ishitani, M.1
Xiong, L.2
Stevenson, B.3
Zhu, J.K.4
-
48
-
-
84858402388
-
The effects of alignment error and alignment filtering on the sitewise detection of positive selection
-
Jordan G, Goldman N, (2012) The effects of alignment error and alignment filtering on the sitewise detection of positive selection. Molecular Biology and Evolution, 29, 1125-1139.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 1125-1139
-
-
Jordan, G.1
Goldman, N.2
-
49
-
-
81855211087
-
Molecular evolution across the Asteraceae: Micro- and macroevolutionary processes
-
Kane NC, Barker MS, Zhan SH, Rieseberg LH, (2011) Molecular evolution across the Asteraceae: micro- and macroevolutionary processes. Molecular Biology and Evolution, 28, 3225-3235.
-
(2011)
Molecular Biology and Evolution
, vol.28
, pp. 3225-3235
-
-
Kane, N.C.1
Barker, M.S.2
Zhan, S.H.3
Rieseberg, L.H.4
-
50
-
-
33244467305
-
The fate of mutations surfing on the wave of a range expansion
-
Klopfstein S, Currat M, Excoffier L, (2006) The fate of mutations surfing on the wave of a range expansion. Molecular Biology and Evolution, 23, 482-490.
-
(2006)
Molecular Biology and Evolution
, vol.23
, pp. 482-490
-
-
Klopfstein, S.1
Currat, M.2
Excoffier, L.3
-
51
-
-
84898041815
-
How weeds emerge: A taxonomic and trait-based examination using United States data
-
Kuester A, Conner JK, Culley T, Baucom RS, (2014) How weeds emerge: a taxonomic and trait-based examination using United States data. The New Phytologist, 202, 1055-1068.
-
(2014)
The New Phytologist
, vol.202
, pp. 1055-1068
-
-
Kuester, A.1
Conner, J.K.2
Culley, T.3
Baucom, R.S.4
-
52
-
-
79960480839
-
Structural determinants crucial to the RNA chaperone activity of glycine-rich RNA-binding proteins 4 and 7 in Arabidopsis thaliana during the cold adaptation process
-
Kwak KJ, Park SJ, Han JH, et al,. (2011) Structural determinants crucial to the RNA chaperone activity of glycine-rich RNA-binding proteins 4 and 7 in Arabidopsis thaliana during the cold adaptation process. Journal of Experimental Botany, 62, 4003-4011.
-
(2011)
Journal of Experimental Botany
, vol.62
, pp. 4003-4011
-
-
Kwak, K.J.1
Park, S.J.2
Han, J.H.3
-
53
-
-
55749086039
-
Natural variation in gene expression between wild and weedy populations of Helianthus annuus
-
Lai Z, Kane NC, Zou Y, Rieseberg LH, (2008) Natural variation in gene expression between wild and weedy populations of Helianthus annuus. Genetics, 179, 1881-1890.
-
(2008)
Genetics
, vol.179
, pp. 1881-1890
-
-
Lai, Z.1
Kane, N.C.2
Zou, Y.3
Rieseberg, L.H.4
-
54
-
-
84863338264
-
Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression
-
Lai Z, Kane NC, Kozik A, et al,. (2012) Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. American Journal of Botany, 99, 209-218.
-
(2012)
American Journal of Botany
, vol.99
, pp. 209-218
-
-
Lai, Z.1
Kane, N.C.2
Kozik, A.3
-
55
-
-
84861180226
-
The rate of beneficial mutations surfing on the wave of a range expansion
-
Lehe R, Hallatschek O, Peliti L, (2012) The rate of beneficial mutations surfing on the wave of a range expansion. PLoS Computational Biology, 8, e1002447.
-
(2012)
PLoS Computational Biology
, vol.8
, pp. e1002447
-
-
Lehe, R.1
Hallatschek, O.2
Peliti, L.3
-
56
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W, Godzik A, (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics, 22, 1658-1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
57
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li L, Stoeckert CJ Jr, Roos DS, (2003) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Research, 13, 2178-2189.
-
(2003)
Genome Research
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, Jr.C.J.2
Roos, D.S.3
-
58
-
-
0033799774
-
Adaptive evolution of seed oils in plants: Accounting for the biogeographic distribution of saturated and unsaturated fatty acids in seed oils
-
Linder CR, (2000) Adaptive evolution of seed oils in plants: accounting for the biogeographic distribution of saturated and unsaturated fatty acids in seed oils. The American Naturalist, 156, 442-458.
-
(2000)
The American Naturalist
, vol.156
, pp. 442-458
-
-
Linder, C.R.1
-
59
-
-
69249123242
-
The more you introduce the more you get: The role of colonization pressure and propagule pressure in invasion ecology
-
Lockwood JL, Cassey P, Blackburn TM, (2009) The more you introduce the more you get: the role of colonization pressure and propagule pressure in invasion ecology. Diversity and Distributions, 15, 904-910.
-
(2009)
Diversity and Distributions
, vol.15
, pp. 904-910
-
-
Lockwood, J.L.1
Cassey, P.2
Blackburn, T.M.3
-
60
-
-
46249095233
-
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
-
Löytynoja A, Goldman N, (2008) Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis. Science, 320, 1632-1635.
-
(2008)
Science
, vol.320
, pp. 1632-1635
-
-
Löytynoja, A.1
Goldman, N.2
-
61
-
-
84893152258
-
Performance of standard and stochastic branch-site models for detecting positive selection among coding sequences
-
Lu A, Guindon S, (2014) Performance of standard and stochastic branch-site models for detecting positive selection among coding sequences. Molecular Biology and Evolution, 31, 484-495.
-
(2014)
Molecular Biology and Evolution
, vol.31
, pp. 484-495
-
-
Lu, A.1
Guindon, S.2
-
62
-
-
0030696674
-
FCA, a gene controlling flowering time in Arabidopsis, encodes a protein containing RNA-binding domains
-
Macknight R, Bancroft I, Page T, et al,. (1997) FCA, a gene controlling flowering time in Arabidopsis, encodes a protein containing RNA-binding domains. Cell, 89, 737-745.
-
(1997)
Cell
, vol.89
, pp. 737-745
-
-
Macknight, R.1
Bancroft, I.2
Page, T.3
-
63
-
-
79957957884
-
High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes
-
Markova-Raina P, Petrov D, (2011) High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes. Genome Research, 21, 863-874.
-
(2011)
Genome Research
, vol.21
, pp. 863-874
-
-
Markova-Raina, P.1
Petrov, D.2
-
64
-
-
41049091189
-
When invasion increases population genetic structure: A study with Centaurea diffusa
-
Marrs RA, Sforza R, Hufbauer RA, (2007) When invasion increases population genetic structure: a study with Centaurea diffusa. Biological Invasions, 10, 561-572.
-
(2007)
Biological Invasions
, vol.10
, pp. 561-572
-
-
Marrs, R.A.1
Sforza, R.2
Hufbauer, R.A.3
-
65
-
-
80053650381
-
Increased growth in sunflower correlates with reduced defences and altered gene expression in response to biotic and abiotic stress
-
Mayrose M, Kane NC, Mayrose I, Dlugosch KM, Rieseberg LH, (2011) Increased growth in sunflower correlates with reduced defences and altered gene expression in response to biotic and abiotic stress. Molecular Ecology, 20, 4683-4694.
-
(2011)
Molecular Ecology
, vol.20
, pp. 4683-4694
-
-
Mayrose, M.1
Kane, N.C.2
Mayrose, I.3
Dlugosch, K.M.4
Rieseberg, L.H.5
-
66
-
-
71549120676
-
Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability
-
Mugford SG, Matthewman CA, Hill L, Kopriva S, (2010) Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability. FEBS Letters, 584, 119-123.
-
(2010)
FEBS Letters
, vol.584
, pp. 119-123
-
-
Mugford, S.G.1
Matthewman, C.A.2
Hill, L.3
Kopriva, S.4
-
67
-
-
32544439824
-
Traits of invasives reconsidered: Phenotypic comparisons of introduced invasive and introduced noninvasive plant species within two closely related clades
-
Muth NZ, Pigliucci M, (2006) Traits of invasives reconsidered: phenotypic comparisons of introduced invasive and introduced noninvasive plant species within two closely related clades. American Journal of Botany, 93, 188-196.
-
(2006)
American Journal of Botany
, vol.93
, pp. 188-196
-
-
Muth, N.Z.1
Pigliucci, M.2
-
68
-
-
0036007925
-
EDS5, an essential component of salicylic acid-dependent signaling for disease resistance in Arabidopsis, is a member of the MATE transporter family
-
Nawrath C, Heck S, Parinthawong N, Métraux J, (2002) EDS5, an essential component of salicylic acid-dependent signaling for disease resistance in Arabidopsis, is a member of the MATE transporter family. The Plant Cell, 14, 275-286.
-
(2002)
The Plant Cell
, vol.14
, pp. 275-286
-
-
Nawrath, C.1
Heck, S.2
Parinthawong, N.3
Métraux, J.4
-
69
-
-
33947651152
-
SA-inducible Arabidopsis glutaredoxin interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription
-
Ndamukong I, Abdallat AA, Thurow C, et al,. (2007) SA-inducible Arabidopsis glutaredoxin interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. The Plant Journal: For Cell and Molecular Biology, 50, 128-139.
-
(2007)
The Plant Journal: For Cell and Molecular Biology
, vol.50
, pp. 128-139
-
-
Ndamukong, I.1
Abdallat, A.A.2
Thurow, C.3
-
70
-
-
14044250209
-
Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis
-
Pagnussat GC, Yu H-J, Ngo QA, et al,. (2005) Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Development, 132, 603-614.
-
(2005)
Development
, vol.132
, pp. 603-614
-
-
Pagnussat, G.C.1
Yu, H.-J.2
Ngo, Q.A.3
-
71
-
-
1042304216
-
APE: Analyses of phylogenetics and evolution in R language
-
Paradis E, Claude J, Strimmer K, (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289-290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
72
-
-
84890120078
-
On the accumulation of deleterious mutations during range expansions
-
Peischl S, Dupanloup I, Kirkpatrick M, Excoffier L, (2013) On the accumulation of deleterious mutations during range expansions. Molecular Ecology, 22, 5972-5982.
-
(2013)
Molecular Ecology
, vol.22
, pp. 5972-5982
-
-
Peischl, S.1
Dupanloup, I.2
Kirkpatrick, M.3
Excoffier, L.4
-
73
-
-
77954288890
-
An alignment confidence score capturing robustness to guide tree uncertainty
-
Penn O, Privman E, Landan G, Graur D, Pupko T, (2010) An alignment confidence score capturing robustness to guide tree uncertainty. Molecular Biology and Evolution, 27, 1759-1767.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 1759-1767
-
-
Penn, O.1
Privman, E.2
Landan, G.3
Graur, D.4
Pupko, T.5
-
74
-
-
33745939114
-
NUCLEAR FUSION DEFECTIVE1 encodes the Arabidopsis RPL21M protein and is required for karyogamy during female gametophyte development and fertilization
-
Portereiko MF, Sandaklie-Nikolova L, Lloyd A, et al,. (2006) NUCLEAR FUSION DEFECTIVE1 encodes the Arabidopsis RPL21M protein and is required for karyogamy during female gametophyte development and fertilization. Plant Physiology, 141, 957-965.
-
(2006)
Plant Physiology
, vol.141
, pp. 957-965
-
-
Portereiko, M.F.1
Sandaklie-Nikolova, L.2
Lloyd, A.3
-
75
-
-
77952492421
-
Evolution in action: Plants resistant to herbicides
-
Powles SB, Yu Q, (2010) Evolution in action: plants resistant to herbicides. Annual Review of Plant Biology, 61, 317-347.
-
(2010)
Annual Review of Plant Biology
, vol.61
, pp. 317-347
-
-
Powles, S.B.1
Yu, Q.2
-
76
-
-
44649196460
-
Adaptive evolution in invasive species
-
Prentis PJ, Wilson JRU, Dormontt EE, Richardson DM, Lowe AJ, (2008) Adaptive evolution in invasive species. Trends in Plant Science, 13, 288-294.
-
(2008)
Trends in Plant Science
, vol.13
, pp. 288-294
-
-
Prentis, P.J.1
Wilson, J.R.U.2
Dormontt, E.E.3
Richardson, D.M.4
Lowe, A.J.5
-
77
-
-
84858383488
-
Improving the performance of positive selection inference by filtering unreliable alignment regions
-
Privman E, Penn O, Pupko T, (2012) Improving the performance of positive selection inference by filtering unreliable alignment regions. Molecular biology and Evolution, 29, 1-5.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 1-5
-
-
Privman, E.1
Penn, O.2
Pupko, T.3
-
78
-
-
0034948423
-
Analysis of flowering time control in Arabidopsis by comparison of double and triple mutants
-
Reeves PH, Coupland G, (2001) Analysis of flowering time control in Arabidopsis by comparison of double and triple mutants. Plant Physiology, 126, 1085-1091.
-
(2001)
Plant Physiology
, vol.126
, pp. 1085-1091
-
-
Reeves, P.H.1
Coupland, G.2
-
79
-
-
84878596895
-
The population genomics of sunflowers and genomic determinants of protein evolution revealed by RNAseq
-
Renaut S, Grassa CJ, Moyers BT, Kane NC, Rieseberg LH, (2012) The population genomics of sunflowers and genomic determinants of protein evolution revealed by RNAseq. Biology, 1, 575-596.
-
(2012)
Biology
, vol.1
, pp. 575-596
-
-
Renaut, S.1
Grassa, C.J.2
Moyers, B.T.3
Kane, N.C.4
Rieseberg, L.H.5
-
80
-
-
0035113472
-
Higher plant glycosyltransferases
-
reviews 3004.
-
Ross J, Li Y, Lim E, Bowles DJ, (2001) Higher plant glycosyltransferases. Genome Biology, 2, reviews 3004.
-
(2001)
Genome Biology
, vol.2
-
-
Ross, J.1
Li, Y.2
Lim, E.3
Bowles, D.J.4
-
81
-
-
42949085825
-
The role of glutathione in photosynthetic organisms: Emerging functions for glutaredoxins and glutathionylation
-
Rouhier N, Lemaire SD, Jacquot J-P, (2008) The role of glutathione in photosynthetic organisms: emerging functions for glutaredoxins and glutathionylation. Annual Review of Plant Biology, 59, 143-166.
-
(2008)
Annual Review of Plant Biology
, vol.59
, pp. 143-166
-
-
Rouhier, N.1
Lemaire, S.D.2
Jacquot, J.-P.3
-
82
-
-
84865798797
-
Large-scale transcriptome characterization and mass discovery of SNPs in globe artichoke and its related taxa
-
Scaglione D, Lanteri S, Acquadro A, et al,. (2012) Large-scale transcriptome characterization and mass discovery of SNPs in globe artichoke and its related taxa. Plant Biotechnology Journal, 10, 956-969.
-
(2012)
Plant Biotechnology Journal
, vol.10
, pp. 956-969
-
-
Scaglione, D.1
Lanteri, S.2
Acquadro, A.3
-
83
-
-
84860565554
-
Serial founder effects during range expansion: A spatial analog of genetic drift
-
Slatkin M, Excoffier L, (2012) Serial founder effects during range expansion: a spatial analog of genetic drift. Genetics, 191, 171-181.
-
(2012)
Genetics
, vol.191
, pp. 171-181
-
-
Slatkin, M.1
Excoffier, L.2
-
84
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
85
-
-
77749304523
-
Evolution of weediness and invasiveness: Charting the course for weed genomics
-
Stewart CN, Tranel PJ, Horvath DP, et al,. (2009) Evolution of weediness and invasiveness: charting the course for weed genomics. Weed Science, 57, 451-462.
-
(2009)
Weed Science
, vol.57
, pp. 451-462
-
-
Stewart, C.N.1
Tranel, P.J.2
Horvath, D.P.3
-
86
-
-
0031441161
-
Population genetic structure of yellow starthistle (Centaurea solstitialis), a colonizing weed in the western United States
-
Sun M, (1997) Population genetic structure of yellow starthistle (Centaurea solstitialis), a colonizing weed in the western United States. Canadian Journal of Botany, 75, 1470-1478.
-
(1997)
Canadian Journal of Botany
, vol.75
, pp. 1470-1478
-
-
Sun, M.1
-
87
-
-
84894433508
-
Rapid evolution of an invasive weed
-
Turner KG, Hufbauer RA, Rieseberg LH, (2014) Rapid evolution of an invasive weed. The New Phytologist, 202, 309-321.
-
(2014)
The New Phytologist
, vol.202
, pp. 309-321
-
-
Turner, K.G.1
Hufbauer, R.A.2
Rieseberg, L.H.3
-
88
-
-
84875284336
-
-
USDA, NRCS(, 13 September 2014). National Plant Data Team, Greensboro, North Carolina.
-
USDA, NRCS (2014) The PLANTS Database (http://plants.usda.gov, 13 September 2014). National Plant Data Team, Greensboro, North Carolina.
-
(2014)
The PLANTS Database
-
-
-
89
-
-
79953324603
-
Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi
-
Waterhouse RM, Zdobnov EM, Kriventseva EV, (2011) Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi. Genome Biology and Evolution, 3, 75-86.
-
(2011)
Genome Biology and Evolution
, vol.3
, pp. 75-86
-
-
Waterhouse, R.M.1
Zdobnov, E.M.2
Kriventseva, E.V.3
-
90
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z, (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Computer Applications in the Biosciences: CABIOS, 13, 555-556.
-
(1997)
Computer Applications in the Biosciences: CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
91
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution, 24, 1586-1591.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
92
-
-
27844439855
-
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
-
Zhang J, Nielsen R, Yang Z, (2005) Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Molecular Biology and Evolution, 22, 2472-2479.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 2472-2479
-
-
Zhang, J.1
Nielsen, R.2
Yang, Z.3
|