Modeling the site-specific variation of selection patterns along lineages

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 35, 2004, Pages 12957-12962

  Guindon, Stéphane ^a   Rodrigo, Allen G ^a   Dyer, Kelly A ^b   Huelsenbeck, John P ^c  

^a UNIVERSITY OF AUCKLAND   (New Zealand)

^b UNIVERSITY OF ROCHESTER   (United States)

^c UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

Codon based model of nucleotide substitutions; Maximum likelihood; Phylogeny; Positive selection

Indexed keywords

ARTICLE; CODON; CODON BASED MODEL; DNA FOOTPRINTING; DNA SEQUENCE; ENVELOPE GENE; GENETIC SELECTION; GENETIC VARIABILITY; HUMAN IMMUNODEFICIENCY VIRUS 1; MAXIMUM LIKELIHOOD METHOD; MODEL; NONSYNONYMOUS NUCLEIC ACID BASE SUBSTITUTION; NUCLEIC ACID BASE SUBSTITUTION; PHYLOGENY; POSITIVE SELECTION; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SITE SPECIFIC VARIATION; STOCHASTIC MODEL; SYNONYMOUS NUCLEIC ACID BASE SUBSTITUTION; VIRUS GENE;

AMINO ACID SUBSTITUTION; DATA INTERPRETATION, STATISTICAL; GENE PRODUCTS, ENV; HIV-1; LIKELIHOOD FUNCTIONS; PHYLOGENY; SELECTION (GENETICS); SEQUENCE ANALYSIS, PROTEIN; SEQUENCE ANALYSIS, RNA; VARIATION (GENETICS);

DARWINIA; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 4444357279     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0402177101     Document Type: Article

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