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Volumn 108, Issue 4, 2011, Pages 1723-1728

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution

Author keywords

Adaptive evolution; Gene for gene relationships; Nuclear mitochondrial interaction; RNA binding protein

Indexed keywords

PENTATRICOPEPTIDE REPEAT PROTEIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

EID: 79952166885     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1007667108     Document Type: Article
Times cited : (210)

References (64)
  • 1
    • 0014070709 scopus 로고
    • On the origin of mitosing cells
    • Sagan L (1967) On the origin of mitosing cells. J Theor Biol 14:255-274.
    • (1967) J Theor Biol , vol.14 , pp. 255-274
    • Sagan, L.1
  • 2
    • 43049083397 scopus 로고    scopus 로고
    • Do recent findings in plant mitochondrial molecular and population genetics have implications for the study of gynodioecy and cytonuclear conflict?
    • McCauley DE, Olson MS (2008) Do recent findings in plant mitochondrial molecular and population genetics have implications for the study of gynodioecy and cytonuclear conflict? Evolution 62:1013-1025.
    • (2008) Evolution , vol.62 , pp. 1013-1025
    • McCauley, D.E.1    Olson, M.S.2
  • 3
    • 9444269352 scopus 로고    scopus 로고
    • Unveiling the molecular arms race between two conflicting genomes in cytoplasmic male sterility?
    • Touzet P, Budar F (2004) Unveiling the molecular arms race between two conflicting genomes in cytoplasmic male sterility? Trends Plant Sci 9:568-570.
    • (2004) Trends Plant Sci , vol.9 , pp. 568-570
    • Touzet, P.1    Budar, F.2
  • 4
    • 0001119910 scopus 로고
    • Current status of the gene-for gene concept
    • Flor HH (1971) Current status of the gene-for gene concept. Annu Rev Phytopathol 9:275-296.
    • (1971) Annu Rev Phytopathol , vol.9 , pp. 275-296
    • Flor, H.H.1
  • 5
    • 0035933527 scopus 로고    scopus 로고
    • Evolutionary dynamics of plant R-genes
    • DOI 10.1126/science.1061337
    • Bergelson J, Kreitman M, Stahl EA, Tian D (2001) Evolutionary dynamics of plant R-genes. Science 292:2281-2285. (Pubitemid 32568041)
    • (2001) Science , vol.292 , Issue.5525 , pp. 2281-2285
    • Bergelson, J.1    Kreitman, M.2    Stahl, E.A.3    Tian, D.4
  • 6
    • 0032415864 scopus 로고    scopus 로고
    • Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process
    • Michelmore RW, Meyers BC (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res 8:1113-1130. (Pubitemid 29027217)
    • (1998) Genome Research , vol.8 , Issue.11 , pp. 1113-1130
    • Michelmore, R.W.1    Meyers, B.C.2
  • 7
    • 33846470605 scopus 로고    scopus 로고
    • Cytoplasmic male sterility: A window to the world of plant mitochondrial-nuclear interactions
    • Chase CD (2007) Cytoplasmic male sterility: A window to the world of plant mitochondrial-nuclear interactions. Trends Genet 23:81-90.
    • (2007) Trends Genet , vol.23 , pp. 81-90
    • Chase, C.D.1
  • 8
    • 2942696655 scopus 로고    scopus 로고
    • Interactions of mitochondrial and nuclear genes that affect male gametophyte development
    • DOI 10.1105/tpc.015966
    • Hanson MR, Bentolila S (2004) Interactions of mitochondrial and nuclear genes that affect male gametophyte development. Plant Cell 16 (Suppl):S154-S169. (Pubitemid 38774225)
    • (2004) Plant Cell , vol.16 , Issue.SUPPL.
    • Hanson, M.R.1    Bentolila, S.2
  • 9
    • 34147100221 scopus 로고    scopus 로고
    • The molecular biology of cytoplasmically inherited male sterility and prospects for its engineering
    • DOI 10.1016/j.copbio.2006.12.002, PII S0958166906001698, Plant Biotechnology / Food Biotechnology
    • Pelletier G, Budar F (2007) The molecular biology of cytoplasmically inherited male sterility and prospects for its engineering. Curr Opin Biotechnol 18:121-125. (Pubitemid 46575223)
    • (2007) Current Opinion in Biotechnology , vol.18 , Issue.2 , pp. 121-125
    • Pelletier, G.1    Budar, F.2
  • 10
    • 0032080597 scopus 로고    scopus 로고
    • The molecular basis of cytoplasmic male sterility and fertility restoration
    • DOI 10.1016/S1360-1385(98)01235-7, PII S1360138598012357
    • Schnable PS, Wise RP (1998) The molecular basis of cytoplasmic male sterility and fertility restoration. Trends Plant Sci 3:175-180. (Pubitemid 28229037)
    • (1998) Trends in Plant Science , vol.3 , Issue.5 , pp. 175-180
    • Schnable, P.S.1    Wise, R.P.2
  • 11
    • 0024286707 scopus 로고
    • A 13-kilodalton maize mitochondrial protein in E. coli confers sensitivity to Bipolaris maydis toxin
    • Dewey RE, Siedow JN, Timothy DH, Levings CS, 3rd (1988) A 13-kilodalton maize mitochondrial protein in E. coli confers sensitivity to Bipolaris maydis toxin. Science 239:293-295.
    • (1988) Science , vol.239 , pp. 293-295
    • Dewey, R.E.1    Siedow, J.N.2    Timothy, D.H.3    Levings III, C.S.4
  • 12
    • 0027402287 scopus 로고
    • Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice
    • Iwabuchi M, Kyozuka J, Shimamoto K (1993) Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice. EMBO J 12:1437-1446. (Pubitemid 23112797)
    • (1993) EMBO Journal , vol.12 , Issue.4 , pp. 1437-1446
    • Iwabuchi, M.1    Kyozuka, J.2    Shimamoto, K.3
  • 13
    • 0024755680 scopus 로고
    • Identification of a mitochondrial protein associated with cytoplasmic male sterility in petunia
    • Nivison HT, Hanson MR (1989) Identification of a mitochondrial protein associated with cytoplasmic male sterility in petunia. Plant Cell 1:1121-1130.
    • (1989) Plant Cell , vol.1 , pp. 1121-1130
    • Nivison, H.T.1    Hanson, M.R.2
  • 14
    • 0034871674 scopus 로고    scopus 로고
    • The PET1-CMS mitochondrial mutation in sunflower is associated with premature programmed cell death and cytochrome c release
    • DOI 10.1105/tpc.13.8.1803
    • Balk J, Leaver CJ (2001) The PET1-CMS mitochondrial mutation in sunflower is associated with premature programmed cell death and cytochrome c release. Plant Cell 13:1803-1818. (Pubitemid 32781992)
    • (2001) Plant Cell , vol.13 , Issue.8 , pp. 1803-1818
    • Balk, J.1    Leaver, C.J.2
  • 15
    • 84966165586 scopus 로고
    • The population genetics of gynodioecy with cytoplasmic-genic male-sterlity
    • Charlesworth D, Ganders FR (1979) The population genetics of gynodioecy with cytoplasmic-genic male-sterlity. Heredity 43:213-218.
    • (1979) Heredity , vol.43 , pp. 213-218
    • Charlesworth, D.1    Ganders, F.R.2
  • 16
    • 0001609371 scopus 로고
    • The evolutionary dynamics of cytoplasmic male sterility
    • Frank SA (1989) The evolutionary dynamics of cytoplasmic male sterility. Am Nat 133:345-376.
    • (1989) Am Nat , vol.133 , pp. 345-376
    • Frank, S.A.1
  • 17
    • 0036678039 scopus 로고    scopus 로고
    • A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants
    • Bentolila S, Alfonso AA, Hanson MR (2002) A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants. Proc Natl Acad Sci USA 99:10887-10892.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 10887-10892
    • Bentolila, S.1    Alfonso, A.A.2    Hanson, M.R.3
  • 18
    • 49249105375 scopus 로고    scopus 로고
    • Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice
    • Kazama T, Nakamura T, Watanabe M, Sugita M, Toriyama K (2008) Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice. Plant J 55:619-628.
    • (2008) Plant J , vol.55 , pp. 619-628
    • Kazama, T.1    Nakamura, T.2    Watanabe, M.3    Sugita, M.4    Toriyama, K.5
  • 19
    • 62549107493 scopus 로고    scopus 로고
    • Characterization of Raphanus sativus pentatricopeptide repeat proteins encoded by the fertility restorer locus for Ogura cytoplasmic male sterility
    • Uyttewaal M, et al. (2008) Characterization of Raphanus sativus pentatricopeptide repeat proteins encoded by the fertility restorer locus for Ogura cytoplasmic male sterility. Plant Cell 20:3331-3345.
    • (2008) Plant Cell , vol.20 , pp. 3331-3345
    • Uyttewaal, M.1
  • 20
    • 84979325449 scopus 로고
    • Male sterility in natural populations of hermaphrodite plants
    • Lewis D (1941) Male sterility in natural populations of hermaphrodite plants. New Phytol 40:56-63.
    • (1941) New Phytol , vol.40 , pp. 56-63
    • Lewis, D.1
  • 21
    • 33845663144 scopus 로고    scopus 로고
    • Merging theory and mechanism in studies of gynodioecy
    • DOI 10.1016/j.tree.2006.09.013, PII S0169534706003065
    • Delph LF, Touzet P, Bailey MF (2007) Merging theory and mechanism in studies of gynodioecy. Trends Ecol Evol 22:17-24. (Pubitemid 44959172)
    • (2007) Trends in Ecology and Evolution , vol.22 , Issue.1 , pp. 17-24
    • Delph, L.F.1    Touzet, P.2    Bailey, M.F.3
  • 25
    • 0038694953 scopus 로고    scopus 로고
    • A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice
    • DOI 10.1016/S0014-5793(03)00480-0
    • Kazama T, Toriyama K (2003) A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice. FEBS Lett 544:99-102. (Pubitemid 36628043)
    • (2003) FEBS Letters , vol.544 , Issue.1-3 , pp. 99-102
    • Kazama, T.1    Toriyama, K.2
  • 26
    • 0037854732 scopus 로고    scopus 로고
    • Genetic characterization of a pentatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male-sterile Kosena radish
    • DOI 10.1046/j.1365-313X.2003.01735.x
    • Koizuka N, et al. (2003) Genetic characterization of a pentatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male-sterile Kosena radish. Plant J 34:407-415. (Pubitemid 36631873)
    • (2003) Plant Journal , vol.34 , Issue.4 , pp. 407-415
    • Koizuka, N.1    Imai, R.2    Fujimoto, H.3    Hayakawa, T.4    Kimura, Y.5    Kohno-Murase, J.6    Sakai, T.7    Kawasaki, S.8    Imamura, J.9
  • 28
    • 33646835190 scopus 로고    scopus 로고
    • Cytoplasmic male sterility of rice with Boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing
    • DOI 10.1105/tpc.105.038240
    • Wang Z, et al. (2006) Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing. Plant Cell 18:676-687. (Pubitemid 43956170)
    • (2006) Plant Cell , vol.18 , Issue.3 , pp. 676-687
    • Wang, Z.1    Zou, Y.2    Li, X.3    Zhang, Q.4    Chen, L.5    Wu, H.6    Su, D.7    Chen, Y.8    Guo, J.9    Luo, D.10    Long, Y.11    Zhong, Y.12    Liu, Y.-G.13
  • 29
    • 26444524918 scopus 로고    scopus 로고
    • Fertility restorer locus Rf1 of sorghum (Sorghum bicolor L.) encodes a pentatricopeptide repeat protein not present in the colinear region of rice chromosome 12
    • DOI 10.1007/s00122-005-2011-y
    • Klein RR, et al. (2005) Fertility restorer locus Rf1 [corrected] of sorghum (Sorghum bicolor L.) encodes a pentatricopeptide repeat protein not present in the colinear region of rice chromosome 12. Theor Appl Genet 111:994-1012. (Pubitemid 41434111)
    • (2005) Theoretical and Applied Genetics , vol.111 , Issue.6 , pp. 994-1012
    • Klein, R.R.1    Klein, P.E.2    Mullet, J.E.3    Minx, P.4    Rooney, W.L.5    Schertz, K.F.6
  • 30
    • 56549095978 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins: A socket set for organelle gene expression
    • Schmitz-Linneweber C, Small I (2008) Pentatricopeptide repeat proteins: A socket set for organelle gene expression. Trends Plant Sci 13:663-670.
    • (2008) Trends Plant Sci , vol.13 , pp. 663-670
    • Schmitz-Linneweber, C.1    Small, I.2
  • 31
    • 77749292909 scopus 로고    scopus 로고
    • The nuclear component of a cytonuclear hybrid incompatibility in Mimulus maps to a cluster of pentatricopeptide repeat genes
    • Barr CM, Fishman L (2010) The nuclear component of a cytonuclear hybrid incompatibility in Mimulus maps to a cluster of pentatricopeptide repeat genes. Genetics 184:455-465.
    • (2010) Genetics , vol.184 , pp. 455-465
    • Barr, C.M.1    Fishman, L.2
  • 32
    • 44649133995 scopus 로고    scopus 로고
    • On the expansion of the pentatricopeptide repeat gene family in plants
    • O'Toole N, et al. (2008) On the expansion of the pentatricopeptide repeat gene family in plants. Mol Biol Evol 25:1120-1128.
    • (2008) Mol Biol Evol , vol.25 , pp. 1120-1128
    • O'Toole, N.1
  • 33
    • 0034123358 scopus 로고    scopus 로고
    • Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana
    • Kuittinen H, Aguadé M (2000) Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana. Genetics 155:863-872. (Pubitemid 30397134)
    • (2000) Genetics , vol.155 , Issue.2 , pp. 863-872
    • Kuittinen, H.1    Aguade, M.2
  • 34
    • 34250747504 scopus 로고    scopus 로고
    • Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection
    • Geddy R, Brown GG (2007) Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection. BMC Genomics 8:130.
    • (2007) BMC Genomics , vol.8 , pp. 130
    • Geddy, R.1    Brown, G.G.2
  • 35
    • 27144519666 scopus 로고    scopus 로고
    • Genome duplication and the origin of angiosperms
    • DOI 10.1016/j.tree.2005.07.008, PII S0169534705002491
    • De Bodt S, Maere S, Van de Peer Y (2005) Genome duplication and the origin of angiosperms. Trends Ecol Evol 20:591-597. (Pubitemid 41502811)
    • (2005) Trends in Ecology and Evolution , vol.20 , Issue.11 , pp. 591-597
    • De, B.S.1    Maere, S.2    Van De, P.Y.3
  • 36
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • DOI 10.1038/nature01521
    • Bowers JE, Chapman BA, Rong J, Paterson AH (2003) Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422:433-438. (Pubitemid 36411396)
    • (2003) Nature , vol.422 , Issue.6930 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 37
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z (2007) PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol 24:1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 38
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang Z, Nielsen R, Goldman N, Pedersen AM (2000) Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449. (Pubitemid 30257141)
    • (2000) Genetics , vol.155 , Issue.1 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.-M.K.4
  • 39
    • 0037162703 scopus 로고    scopus 로고
    • Modular recognition of RNA by a human Pumilio-homology domain
    • DOI 10.1016/S0092-8674(02)00873-5
    • Wang X, McLachlan J, Zamore PD, Hall TM (2002) Modular recognition of RNA by a human pumilio-homology domain. Cell 110:501-512. (Pubitemid 35232293)
    • (2002) Cell , vol.110 , Issue.4 , pp. 501-512
    • Wang, X.1    McLachlan, J.2    Zamore, P.D.3    Hall, T.M.T.4
  • 40
    • 37749036789 scopus 로고    scopus 로고
    • Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles
    • Delannoy E, Stanley WA, Bond CS, Small ID (2007) Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles. Biochem Soc Trans 35:1643-1647.
    • (2007) Biochem Soc Trans , vol.35 , pp. 1643-1647
    • Delannoy, E.1    Stanley, W.A.2    Bond, C.S.3    Small, I.D.4
  • 41
    • 67651171227 scopus 로고    scopus 로고
    • Site-specific binding of a PPR protein defines and stabilizes 5′ and 3′ mRNA termini in chloroplasts
    • Pfalz J, Bayraktar OA, Prikryl J, Barkan A (2009) Site-specific binding of a PPR protein defines and stabilizes 5′ and 3′ mRNA termini in chloroplasts. EMBO J 28:2042-2052.
    • (2009) EMBO J , vol.28 , pp. 2042-2052
    • Pfalz, J.1    Bayraktar, O.A.2    Prikryl, J.3    Barkan, A.4
  • 42
    • 73249140998 scopus 로고    scopus 로고
    • A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites
    • Hammani K, et al. (2009) A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites. Plant Cell 21:3686-3699.
    • (2009) Plant Cell , vol.21 , pp. 3686-3699
    • Hammani, K.1
  • 43
    • 33846055504 scopus 로고    scopus 로고
    • The petunia restorer of fertility protein is part of a large mitochondrial complex that interacts with transcripts of the CMS-associated locus
    • DOI 10.1111/j.1365-313X.2006.02953.x
    • Gillman JD, Bentolila S, Hanson MR (2007) The petunia restorer of fertility protein is part of a large mitochondrial complex that interacts with transcripts of the CMS-associated locus. Plant J 49:217-227. (Pubitemid 46058948)
    • (2007) Plant Journal , vol.49 , Issue.2 , pp. 217-227
    • Gillman, J.D.1    Bentolila, S.2    Hanson, M.R.3
  • 44
    • 4143061437 scopus 로고    scopus 로고
    • Gender in plants: Sex chromosomes are emerging from the fog
    • DOI 10.1016/j.tig.2004.06.006, PII S0168952504001568
    • Vyskot B, Hobza R (2004) Gender in plants: Sex chromosomes are emerging from the fog. Trends Genet 20:432-438. (Pubitemid 39094572)
    • (2004) Trends in Genetics , vol.20 , Issue.9 , pp. 432-438
    • Vyskot, B.1    Hobza, R.2
  • 46
    • 77950363535 scopus 로고    scopus 로고
    • RNA PROCESSING FACTOR2 is required for 5′ end processing of nad9 and cox3 mRNAs in mitochondria of Arabidopsis thaliana
    • Jonietz C, Forner J, Hölzle A, Thuss S, Binder S (2010) RNA PROCESSING FACTOR2 is required for 5′ end processing of nad9 and cox3 mRNAs in mitochondria of Arabidopsis thaliana. Plant Cell 22:443-453.
    • (2010) Plant Cell , vol.22 , pp. 443-453
    • Jonietz, C.1    Forner, J.2    Hölzle, A.3    Thuss, S.4    Binder, S.5
  • 47
    • 72049086175 scopus 로고    scopus 로고
    • Plant mating systems in a changing world
    • Eckert CG, et al. (2010) Plant mating systems in a changing world. Trends Ecol Evol 25:35-43.
    • (2010) Trends Ecol Evol , vol.25 , pp. 35-43
    • Eckert, C.G.1
  • 48
    • 33745285369 scopus 로고    scopus 로고
    • Cyto-nuclear epistasis: Two-locus random genetic drift in hermaphroditic and dioecious species
    • Wade MJ, Goodnight CJ (2006) Cyto-nuclear epistasis: Two-locus random genetic drift in hermaphroditic and dioecious species. Evolution 60:643-659.
    • (2006) Evolution , vol.60 , pp. 643-659
    • Wade, M.J.1    Goodnight, C.J.2
  • 49
    • 77950363131 scopus 로고    scopus 로고
    • MRL1, a conserved Pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis
    • Johnson X, et al. (2010) MRL1, a conserved Pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis. Plant Cell 22:234-248.
    • (2010) Plant Cell , vol.22 , pp. 234-248
    • Johnson, X.1
  • 50
    • 56049116911 scopus 로고    scopus 로고
    • Amino acid sequence variations in Nicotiana CRR4 orthologs determine the species-specific efficiency of RNA editing in plastids
    • Okuda K, Habata Y, Kobayashi Y, Shikanai T (2008) Amino acid sequence variations in Nicotiana CRR4 orthologs determine the species-specific efficiency of RNA editing in plastids. Nucleic Acids Res 36:6155-6164.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6155-6164
    • Okuda, K.1    Habata, Y.2    Kobayashi, Y.3    Shikanai, T.4
  • 51
    • 70649100409 scopus 로고    scopus 로고
    • Signature of diversifying selection on members of the pentatricopeptide repeat protein family in Arabidopsis lyrata
    • Foxe JP, Wright SI (2009) Signature of diversifying selection on members of the pentatricopeptide repeat protein family in Arabidopsis lyrata. Genetics 183:663-672, 1SI--8SI.
    • (2009) Genetics , vol.183
    • Foxe, J.P.1    Wright, S.I.2
  • 52
    • 33748760611 scopus 로고    scopus 로고
    • The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    • Tuskan GA, et al. (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313:1596-1604.
    • (2006) Science , vol.313 , pp. 1596-1604
    • Tuskan, G.A.1
  • 54
    • 76749150030 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the model grass Brachypodium distachyon
    • International Brachypodium Initiative
    • Vogel JP, et al.; International Brachypodium Initiative (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463:763-768.
    • (2010) Nature , vol.463 , pp. 763-768
    • Vogel, J.P.1
  • 55
    • 74549221016 scopus 로고    scopus 로고
    • Genome sequence of the palaeopolyploid soybean
    • Schmutz J, et al. (2010) Genome sequence of the palaeopolyploid soybean. Nature 463:178-183.
    • (2010) Nature , vol.463 , pp. 178-183
    • Schmutz, J.1
  • 56
    • 58449137410 scopus 로고    scopus 로고
    • The Sorghum bicolor genome and the diversification of grasses
    • Paterson AH, et al. (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457:551-556.
    • (2009) Nature , vol.457 , pp. 551-556
    • Paterson, A.H.1
  • 57
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • Schnable PS, et al. (2009) The B73 maize genome: Complexity, diversity, and dynamics. Science 326:1112-1115.
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1
  • 58
    • 8844252293 scopus 로고    scopus 로고
    • TigrScan and GlimmerHMM: Two open source ab initio eukaryotic gene-finders
    • DOI 10.1093/bioinformatics/bth315
    • Majoros WH, Pertea M, Salzberg SL (2004) TigrScan and GlimmerHMM: Two open source ab initio eukaryotic gene-finders. Bioinformatics 20:2878-2879. (Pubitemid 39530188)
    • (2004) Bioinformatics , vol.20 , Issue.16 , pp. 2878-2879
    • Majoros, W.H.1    Pertea, M.2    Salzberg, S.L.3
  • 60
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 61
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680. (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 62
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 63
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
    • DOI 10.1093/nar/gkl315
    • Suyama M, Torrents D, Bork P (2006) PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res 34 (Web Server issue):W609-W612. (Pubitemid 44529842)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS
    • Suyama, M.1    Torrents, D.2    Bork, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.