-
1
-
-
0014053906
-
The effect of environmental conditions on the motility of Escherichia coli
-
Adler J, Templeton B. (1967). The effect of environmental conditions on the motility of Escherichia coli. J Gen Microbiol 46: 175-184.
-
(1967)
J Gen Microbiol
, vol.46
, pp. 175-184
-
-
Adler, J.1
Templeton, B.2
-
2
-
-
67649576309
-
Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing 'Leptospirillum rubarum' (Group II) and 'Leptospirillum ferrodiazotrophum' (Group III) bacteria in acid mine drainage biofilms
-
Aliaga Goltsman DS, Denef VJ, Singer SW, VerBerkmoes NC, Lefsrud M, Mueller RS et al. (2009). Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing 'Leptospirillum rubarum' (Group II) and 'Leptospirillum ferrodiazotrophum' (Group III) bacteria in acid mine drainage biofilms. Appl Environ Microbiol 75: 4599-4615.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4599-4615
-
-
Aliaga Goltsman, D.S.1
Denef, V.J.2
Singer, S.W.3
Verberkmoes, N.C.4
Lefsrud, M.5
Mueller, R.S.6
-
3
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann RI, Ludwig W, Schleifer KH. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
4
-
-
84874334550
-
An overview on bacterial motility detection
-
Aygan A, Arikan B. (2007). An overview on bacterial motility detection. Int J Agr Biol 9: 193-196.
-
(2007)
Int J Agr Biol
, vol.9
, pp. 193-196
-
-
Aygan, A.1
Arikan, B.2
-
5
-
-
77950063427
-
Cultivation and quantitative proteomic analyses of acidophilic microbial communities
-
Belnap CP, Pan C, VerBerkmoes NC, Power ME, Samatova NF, Carver RL et al. (2010). Cultivation and quantitative proteomic analyses of acidophilic microbial communities. ISME J 4: 520-530.
-
(2010)
ISME J
, vol.4
, pp. 520-530
-
-
Belnap, C.P.1
Pan, C.2
Verberkmoes, N.C.3
Power, M.E.4
Samatova, N.F.5
Carver, R.L.6
-
6
-
-
84871718604
-
In situ spectroscopy on intact Leptospirillum ferrooxidans reveals that reduced cytochrome 579 is an obligatory intermediate in the aerobic iron respiratory chain
-
Blake RC, Griff MN. (2012). In situ spectroscopy on intact Leptospirillum ferrooxidans reveals that reduced cytochrome 579 is an obligatory intermediate in the aerobic iron respiratory chain. Front Microbiol 3: 136.
-
(2012)
Front Microbiol
, vol.3
, pp. 136
-
-
Blake, R.C.1
Griff, M.N.2
-
7
-
-
0034992824
-
Design and performance of rRNA targeted oligonucleotide probes for in situ detection and phylogenetic identification of microorganisms inhabiting acid mine drainage environments
-
Bond P, Banfield J. (2001). Design and performance of rRNA targeted oligonucleotide probes for in situ detection and phylogenetic identification of microorganisms inhabiting acid mine drainage environments. Microb Ecol 41: 149-161.
-
(2001)
Microb Ecol
, vol.41
, pp. 149-161
-
-
Bond, P.1
Banfield, J.2
-
8
-
-
84855653203
-
Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments
-
Bonnefoy V, Holmes DS. (2012). Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments. Environ Microbiol 14: 1597-1611.
-
(2012)
Environ Microbiol
, vol.14
, pp. 1597-1611
-
-
Bonnefoy, V.1
Holmes, D.S.2
-
9
-
-
4344571581
-
Rank products: A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
-
Breitling R, Armengaud P, Amtmann A, Herzyk P. (2004). Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Lett 573: 83-92.
-
(2004)
FEBS Lett
, vol.573
, pp. 83-92
-
-
Breitling, R.1
Armengaud, P.2
Amtmann, A.3
Herzyk, P.4
-
10
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns SJJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJH, Snijders APL et al. (2008). Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321: 960-964.
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.H.5
Snijders, A.P.L.6
-
11
-
-
84874605070
-
Proteomic comparison of historic and recently emerged hypervirulent Clostridium difficile strains
-
Chen J-W, Scaria J, Mao C, Sobral B, Zhang S, Lawley Tet al. (2013). Proteomic comparison of historic and recently emerged hypervirulent Clostridium difficile strains. Environ Sci Technol 12: 1151-1161.
-
(2013)
Environ Sci Technol
, vol.12
, pp. 1151-1161
-
-
Chen, J.-W.1
Scaria, J.2
Mao, C.3
Sobral, B.4
Zhang, S.5
Lawley, T.6
-
12
-
-
78649854658
-
Direct cellular lysis/ protein extraction protocol for soil metaproteomics
-
Chourey K, Jansson J, VerBerkmoes N, ShahM, Chavarria KL, Tom LM et al. (2010). Direct cellular lysis/ protein extraction protocol for soil metaproteomics. J Proteome Res 9: 6615-6622.
-
(2010)
J Proteome Res
, vol.9
, pp. 6615-6622
-
-
Chourey, K.1
Jansson, J.2
Verberkmoes, N.3
Shahm Chavarria, K.L.4
Tom, L.M.5
-
13
-
-
0036151760
-
Molecular relationship between two groups of the genus Leptospirillum and the finding that Leptosphillum ferriphilum sp nov dominates South African commercial biooxidation tanks that operate at 40 degrees C
-
Coram N, Rawlings D. (2002). Molecular relationship between two groups of the genus Leptospirillum and the finding that Leptosphillum ferriphilum sp nov dominates South African commercial biooxidation tanks that operate at 40 degrees C. Appl Environ Microbiol 68: 838-845.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 838-845
-
-
Coram, N.1
Rawlings, D.2
-
14
-
-
77951533012
-
From relative to absolute quantification of tryptic peptides with tandem mass tags: Application to cerebrospinal fluid
-
Dayon L, Turck N, Scherl A, Hochstrasser DF, Burkhard PR, Sanchez J-C. (2010). From relative to absolute quantification of tryptic peptides with tandem mass tags: application to cerebrospinal fluid. Chimia (Aarau) 64: 132-135.
-
(2010)
Chimia (Aarau)
, vol.64
, pp. 132-135
-
-
Dayon, L.1
Turck, N.2
Scherl, A.3
Hochstrasser, D.F.4
Burkhard, P.R.5
Sanchez, J.-C.6
-
15
-
-
84860160394
-
In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids
-
Denef VJ, Banfield JF. (2012). In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids. Science 336: 462-466.
-
(2012)
Science
, vol.336
, pp. 462-466
-
-
Denef, V.J.1
Banfield, J.F.2
-
16
-
-
77951498518
-
AMD biofilms: Using model communities to study microbial evolution and ecological complexity in nature
-
Denef VJ, Mueller RS, Banfield JF. (2010). AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. ISME J 4: 599-610.
-
(2010)
ISME J
, vol.4
, pp. 599-610
-
-
Denef, V.J.1
Mueller, R.S.2
Banfield, J.F.3
-
17
-
-
58549091696
-
Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation
-
Denef VJ, VerBerkmoes NC, ShahMB, Abraham P, Lefsrud M, Hettich RL et al. (2009). Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation. Environ Microbiol 11: 313-325.
-
(2009)
Environ Microbiol
, vol.11
, pp. 313-325
-
-
Denef, V.J.1
Verberkmoes, N.C.2
Shahmb Abraham, P.3
Lefsrud, M.4
Hettich, R.L.5
-
18
-
-
84867713649
-
Long-term warming alters the composition of Arctic soil microbial communities
-
Deslippe JR, Hartmann M, Simard SW, Mohn WW. (2012). Long-term warming alters the composition of Arctic soil microbial communities. FEMS Microbiol Ecol 82: 303-315.
-
(2012)
FEMS Microbiol Ecol
, vol.82
, pp. 303-315
-
-
Deslippe, J.R.1
Hartmann, M.2
Simard, S.W.3
Mohn, W.W.4
-
19
-
-
77957677306
-
Proteomic analysis reveals a novel mechanism induced by the leukemic oncogene Tel/PDGFRb in stem cells: Activation of the interferon response pathways
-
Dobbin E, Graham C, Freeburn RW, Unwin RD, Griffiths JR, Pierce A et al. (2010). Proteomic analysis reveals a novel mechanism induced by the leukemic oncogene Tel/PDGFRb in stem cells: activation of the interferon response pathways. Stem Cell Res 5: 226-243.
-
(2010)
Stem Cell Res
, vol.5
, pp. 226-243
-
-
Dobbin, E.1
Graham, C.2
Freeburn, R.W.3
Unwin, R.D.4
Griffiths, J.R.5
Pierce, A.6
-
20
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng JK, McCormack AL, Yates JR. (1994). An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 5: 976-989.
-
(1994)
J Am Soc Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.3
-
21
-
-
79551711825
-
Effects of sea surface warming on the production and composition of dissolved organic matter during phytoplankton blooms: Results from a mesocosm study
-
Engel A, Handel N, Wohlers J, Lunau M, Grossart HP, Sommer U et al. (2011). Effects of sea surface warming on the production and composition of dissolved organic matter during phytoplankton blooms: results from a mesocosm study. J Plankton Res 33: 357-372.
-
(2011)
J Plankton Res
, vol.33
, pp. 357-372
-
-
Engel, A.1
Handel, N.2
Wohlers, J.3
Lunau, M.4
Grossart, H.P.5
Sommer, U.6
-
22
-
-
49449112667
-
Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments
-
Finke N, J?rgensen BB. (2008). Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments. ISME J 2: 815-829.
-
(2008)
ISME J
, vol.2
, pp. 815-829
-
-
Finke, N.1
Jrgensen, B.B.2
-
23
-
-
0031410680
-
Release and bioavailability of C, N, P, Se, and Fe following viral lysis of a marine chrysophyte
-
Gobler CJ, Hutchins DA, Fisher NS, Cosper EM, Sanudo-Wilhelmy SA. (1997). Release and bioavailability of C, N, P, Se, and Fe following viral lysis of a marine chrysophyte. Limnol Oceanogr 42: 1492-1504.
-
(1997)
Limnol Oceanogr
, vol.42
, pp. 1492-1504
-
-
Gobler, C.J.1
Hutchins, D.A.2
Fisher, N.S.3
Cosper, E.M.4
Sanudo-Wilhelmy, S.A.5
-
24
-
-
79955427809
-
Detection of differential proteomes associated with the development of type 2 diabetes in the Zucker rat model using the iTRAQ technique
-
Han D, Moon S, Kim H, Choi S-E, Lee S-J, Park KS et al. (2011). Detection of differential proteomes associated with the development of type 2 diabetes in the Zucker rat model using the iTRAQ technique. J Proteome Res 10: 564-577.
-
(2011)
J Proteome Res
, vol.10
, pp. 564-577
-
-
Han, D.1
Moon, S.2
Kim, H.3
Choi, S.-E.4
Lee, S.-J.5
Park, K.S.6
-
25
-
-
19644401538
-
Genomic and proteomic adaptations to growth at high temperature
-
Hickey DA, Singer GAC. (2004). Genomic and proteomic adaptations to growth at high temperature. Genome Biol 5: 117-117.
-
(2004)
Genome Biol
, vol.5
, pp. 117-117
-
-
Hickey, D.A.1
Singer, G.A.C.2
-
26
-
-
80052509484
-
Quantitative proteomic analysis of the heat stress response in Clostridium difficile strain 630
-
Jain S, Graham C, Graham RLJ, McMullan G, Ternan NG. (2011). Quantitative proteomic analysis of the heat stress response in Clostridium difficile strain 630. J Proteome Res 10: 3880-3890.
-
(2011)
J Proteome Res
, vol.10
, pp. 3880-3890
-
-
Jain, S.1
Graham, C.2
Graham, R.L.J.3
McMullan, G.4
Ternan, N.G.5
-
27
-
-
43449096010
-
Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community
-
Jeans C, Singer SW, Chan CS, VerBerkmoes NC, Shah M, Hettich RL et al. (2008). Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community. ISME J 2: 542-550.
-
(2008)
ISME J
, vol.2
, pp. 542-550
-
-
Jeans, C.1
Singer, S.W.2
Chan, C.S.3
Verberkmoes, N.C.4
Shah, M.5
Hettich, R.L.6
-
28
-
-
77951585150
-
Characterization of extracellular polymeric substances from acidophilic microbial biofilms
-
Jiao Y, Cody GD, Harding AK, Wilmes P, Schrenk M, Wheeler KE et al. (2010). Characterization of extracellular polymeric substances from acidophilic microbial biofilms. Appl Environ Microbiol 76: 2916-2922.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 2916-2922
-
-
Jiao, Y.1
Cody, G.D.2
Harding, A.K.3
Wilmes, P.4
Schrenk, M.5
Wheeler, K.E.6
-
29
-
-
84870851163
-
Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities
-
Justice NB, Pan C, Mueller R, Spaulding SE, Shah V, Sun CL et al. (2012). Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities. Appl Environ Microbiol 78: 8321-8330.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 8321-8330
-
-
Justice, N.B.1
Pan, C.2
Mueller, R.3
Spaulding, S.E.4
Shah, V.5
Sun, C.L.6
-
30
-
-
70349974261
-
High precision quantitative proteomics using iTRAQ on an LTQ orbitrap: A new mass spectrometric method combining the benefits of all
-
Köcher T, Pichler P, Schutzbier M, Stingl C, Kaul A, Teucher N et al. (2009). High precision quantitative proteomics using iTRAQ on an LTQ orbitrap: a new mass spectrometric method combining the benefits of all. Environ Sci Technol 8: 4743-4752.
-
(2009)
Environ Sci Technol
, vol.8
, pp. 4743-4752
-
-
Köcher, T.1
Pichler, P.2
Schutzbier, M.3
Stingl, C.4
Kaul, A.5
Teucher, N.6
-
31
-
-
79960581086
-
A dynamic model of proteome changes reveals new roles for transcript alteration in yeast
-
Lee MV, Topper SE, Hubler SL, Hose J, Wenger CD, Coon JJ et al. (2011). A dynamic model of proteome changes reveals new roles for transcript alteration in yeast. Mol Syst Biol 7: 1-12.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 1-12
-
-
Lee, M.V.1
Topper, S.E.2
Hubler, S.L.3
Hose, J.4
Wenger, C.D.5
Coon, J.J.6
-
32
-
-
0027266795
-
Adverse conditions which cause lack of flagella in Escherichia coli
-
Li C, Louise CJ, Shi W, Adler J. (1993). Adverse conditions which cause lack of flagella in Escherichia coli. J Bacteriol 175: 2229-2235.
-
(1993)
J Bacteriol
, vol.175
, pp. 2229-2235
-
-
Li, C.1
Louise, C.J.2
Shi, W.3
Adler, J.4
-
33
-
-
84863230118
-
Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ orbitrap velos
-
Li Z, Adams RM, Chourey K, Hurst GB, Hettich RL, Pan C. (2012). Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ orbitrap velos. J Proteome Res 11: 1582-1590.
-
(2012)
J Proteome Res
, vol.11
, pp. 1582-1590
-
-
Li, Z.1
Adams, R.M.2
Chourey, K.3
Hurst, G.B.4
Hettich, R.L.5
Pan, C.6
-
34
-
-
84896778263
-
Strigolactone-regulated proteins revealed by iTRAQ-based quantitative proteomics in Arabidopsis
-
Li Z, Czarnecki O, Chourey K, Yang J, Tuskan GA, Hurst GB et al. (2014). Strigolactone-regulated proteins revealed by iTRAQ-based quantitative proteomics in Arabidopsis. J Proteome Res 13: 1359-1372.
-
(2014)
J Proteome Res
, vol.13
, pp. 1359-1372
-
-
Li, Z.1
Czarnecki, O.2
Chourey, K.3
Yang, J.4
Tuskan, G.A.5
Hurst, G.B.6
-
35
-
-
84874716930
-
Consequences of increased temperature and acidification on bacterioplankton community composition during a mesocosm spring bloom in the Baltic Sea
-
Lindh MV, Riemann L, Baltar F, Romero-Oliva C, Salomon PS, Granéli E et al. (2013). Consequences of increased temperature and acidification on bacterioplankton community composition during a mesocosm spring bloom in the Baltic Sea. Environ Microbiol Rep 5: 252-262.
-
(2013)
Environ Microbiol Rep
, vol.5
, pp. 252-262
-
-
Lindh, M.V.1
Riemann, L.2
Baltar, F.3
Romero-Oliva, C.4
Salomon, P.S.5
Granéli, E.6
-
36
-
-
34047169728
-
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
-
Lo I, Denef V, Verberkmoes N, Shah M, Goltsman D, DiBartolo G et al. (2007). Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature 446: 537-541.
-
(2007)
Nature
, vol.446
, pp. 537-541
-
-
Lo, I.1
Denef, V.2
Verberkmoes, N.3
Shah, M.4
Goltsman, D.5
Dibartolo, G.6
-
38
-
-
84894050299
-
Soil microbial community responses to a decade of warming as revealed by comparative metagenomics
-
Luo C, Rodriguez-R LM, Johnston ER, Wu L, Cheng L, Xue K et al. (2014). Soil microbial community responses to a decade of warming as revealed by comparative metagenomics. Appl Environ Microbiol 80: 1777-1786.
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 1777-1786
-
-
Luo, C.1
Rodriguez-R, L.M.2
Johnston, E.R.3
Wu, L.4
Cheng, L.5
Xue, K.6
-
39
-
-
0037087872
-
Regeneration of dissolved organic matter by viral lysis in marine microbial communities
-
Middelboe M, Lyck PG. (2002). Regeneration of dissolved organic matter by viral lysis in marine microbial communities. Aquat Microb Ecol 27: 187-194.
-
(2002)
Aquat Microb Ecol
, vol.27
, pp. 187-194
-
-
Middelboe, M.1
Lyck, P.G.2
-
40
-
-
34547588704
-
KAAS: An automatic genome annotation and pathway reconstruction server
-
Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M. (2007). KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res 35: W182-W185.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W182-W185
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.C.4
Kanehisa, M.5
-
41
-
-
0344540029
-
Flagellar changes in Escherichia coli induced by temperature of the environment
-
Morrison RB, McCapra J. (1961). Flagellar changes in Escherichia coli induced by temperature of the environment. Nature 192: 774-776.
-
(1961)
Nature
, vol.192
, pp. 774-776
-
-
Morrison, R.B.1
McCapra, J.2
-
42
-
-
84880077929
-
Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotopeenabled metabolomics
-
Mosier AC, Justice NB, Bowen BP, Baran R, Thomas BC, Northen TR et al. (2013). Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotopeenabled metabolomics. mBio 4: 00484-00412.
-
(2013)
MBio
, vol.4
, pp. 00484-00412
-
-
Mosier, A.C.1
Justice, N.B.2
Bowen, B.P.3
Baran, R.4
Thomas, B.C.5
Northen, T.R.6
-
43
-
-
77953272819
-
Ecological distribution and population physiology defined by proteomics in a natural microbial community
-
Mueller RS, Denef VJ, Kalnejais LH, Suttle KB, Thomas BC, Wilmes P et al. (2010). Ecological distribution and population physiology defined by proteomics in a natural microbial community. Mol Syst Biol 6: 374.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 374
-
-
Mueller, R.S.1
Denef, V.J.2
Kalnejais, L.H.3
Suttle, K.B.4
Thomas, B.C.5
Wilmes, P.6
-
44
-
-
79953693284
-
Exoproteome of Staphylococcus aureus reveals putative determinants of nasal carriage
-
Muthukrishnan G, Quinn GA, Lamers RP, Diaz C, Cole AL, Chen S et al. (2011). Exoproteome of Staphylococcus aureus reveals putative determinants of nasal carriage. J Proteome Res 10: 2064-2078.
-
(2011)
J Proteome Res
, vol.10
, pp. 2064-2078
-
-
Muthukrishnan, G.1
Quinn, G.A.2
Lamers, R.P.3
Diaz, C.4
Cole, A.L.5
Chen, S.6
-
45
-
-
43849089302
-
Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics
-
Pan C, Oda Y, Lankford PK, Zhang B, Samatova NF, Pelletier DA et al. (2008). Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics. Mol Cell Proteomics 7: 938-948.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 938-948
-
-
Pan, C.1
Oda, Y.2
Lankford, P.K.3
Zhang, B.4
Samatova, N.F.5
Pelletier, D.A.6
-
46
-
-
78149297086
-
CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrateactive enzymes in a newly sequenced organism using CAZy database
-
Park BH, Karpinets TV, Syed MH, Leuze MR, Uberbacher EC. (2010). CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrateactive enzymes in a newly sequenced organism using CAZy database. Glycobiology 20: 1574-1584.
-
(2010)
Glycobiology
, vol.20
, pp. 1574-1584
-
-
Park, B.H.1
Karpinets, T.V.2
Syed, M.H.3
Leuze, M.R.4
Uberbacher, E.C.5
-
47
-
-
84876806581
-
Mass spectrometry-based quantitative proteomic profiling of human pancreatic and hepatic stellate cell lines
-
Paulo JA, Kadiyala V, Banks PA, Conwell DL, Steen H. (2013). Mass spectrometry-based quantitative proteomic profiling of human pancreatic and hepatic stellate cell lines. Genomics Proteomics Bioinformatics 11: 105-113.
-
(2013)
Genomics Proteomics Bioinformatics
, vol.11
, pp. 105-113
-
-
Paulo, J.A.1
Kadiyala, V.2
Banks, P.A.3
Conwell, D.L.4
Steen, H.5
-
48
-
-
21344465408
-
Community proteomics of a natural microbial biofilm
-
Ram RJ, VerBerkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC et al. (2005). Community proteomics of a natural microbial biofilm. Science 308: 1915-1920.
-
(2005)
Science
, vol.308
, pp. 1915-1920
-
-
Ram, R.J.1
Verberkmoes, N.C.2
Thelen, M.P.3
Tyson, G.W.4
Baker, B.J.5
Blake, R.C.6
-
49
-
-
58549100236
-
Effects of temperature on growth rate and gross growth efficiency of an Antarctic bacterivorous protist
-
Rose JM, Vora NM, Countway PD, Gast RJ, Caron DA. (2009). Effects of temperature on growth rate and gross growth efficiency of an Antarctic bacterivorous protist. ISME J 3: 252-260.
-
(2009)
ISME J
, vol.3
, pp. 252-260
-
-
Rose, J.M.1
Vora, N.M.2
Countway, P.D.3
Gast, R.J.4
Caron, D.A.5
-
50
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross PL, Huang YN, Marchese JN, Williamson B, Parker K, Hattan S et al. (2004). Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 3: 1154-1169.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
-
51
-
-
0030741375
-
The crystal structure of citrate synthase from the hyperthermophilic archaeon Pyrococcus furiosus at 1.9 Aresolution
-
Russell RJ, Ferguson JM, Hough DW, Danson MJ, Taylor GL. (1997). The crystal structure of citrate synthase from the hyperthermophilic archaeon Pyrococcus furiosus at 1.9 Aresolution. Biochemistry 36: 9983-9994.
-
(1997)
Biochemistry
, vol.36
, pp. 9983-9994
-
-
Russell, R.J.1
Ferguson, J.M.2
Hough, D.W.3
Danson, M.J.4
Taylor, G.L.5
-
52
-
-
0037311919
-
TM4: A free, open-source system for microarray data management and analysis
-
Saeed AI, Sharov V, White J, Li J, LiangW, Bhagabati N et al. (2003). TM4: a free, open-source system for microarray data management and analysis. BioTechniques 34: 374-378.
-
(2003)
BioTechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liangw Bhagabati, N.5
-
53
-
-
84906541312
-
CRISPR-Cas systems: New players in gene regulation and bacterial physiology
-
Sampson TR, Weiss DS. (2014). CRISPR-Cas systems: new players in gene regulation and bacterial physiology. Front Cell Infect Microbiol 4: 1-8.
-
(2014)
Front Cell Infect Microbiol
, vol.4
, pp. 1-8
-
-
Sampson, T.R.1
Weiss, D.S.2
-
55
-
-
48349103531
-
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation
-
Simmons SL, Dibartolo G, Denef VJ, Goltsman DSA, Thelen MP, Banfield JF. (2008). Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. PLoS Biol 6: e177.
-
(2008)
PLoS Biol
, vol.6
, pp. e177
-
-
Simmons, S.L.1
Dibartolo, G.2
Denef, V.J.3
Goltsman, D.S.A.4
Thelen, M.P.5
Banfield, J.F.6
-
56
-
-
47749144837
-
Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community
-
Singer SW, Chan CS, Zemla A, VerBerkmoes NC, Hwang M, Hettich RL et al. (2008). Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community. Appl Environ Microbiol 74: 4454-4462.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4454-4462
-
-
Singer, S.W.1
Chan, C.S.2
Zemla, A.3
Verberkmoes, N.C.4
Hwang, M.5
Hettich, R.L.6
-
57
-
-
77950632608
-
Associating growthphase- related changes in the proteome of Acinetobacter baumannii with increased resistance to oxidative stress
-
Soares NC, CabralMP, Gayoso C, Mallo S, Rodriguez-Velo P, Fernández-Moreira E et al. (2010). Associating growthphase- related changes in the proteome of Acinetobacter baumannii with increased resistance to oxidative stress. J Proteome Res 9: 1951-1964.
-
(2010)
J Proteome Res
, vol.9
, pp. 1951-1964
-
-
Soares, N.C.1
Cabral, M.P.2
Gayoso, C.3
Mallo, S.4
Rodriguez-Velo, P.5
Fernández-Moreira, E.6
-
58
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA et al. (2005). Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci 102: 15545-15550.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
-
59
-
-
25144506135
-
Viruses in the sea
-
Suttle C. (2005). Viruses in the sea. Nature 437: 356-361.
-
(2005)
Nature
, vol.437
, pp. 356-361
-
-
Suttle, C.1
-
60
-
-
0036393898
-
DTA Select and contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
-
Tabb DL, McDonald WH, Yates JR. (2002). DTASelect and contrast: tools for assembling and comparing protein identifications from shotgun proteomics. Environ Sci Technol 1: 21-26.
-
(2002)
Environ Sci Technol
, vol.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
Yates, J.R.3
-
61
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov RL, Koonin EV, Lipman DJ. (1997). A genomic perspective on protein families. Science 278: 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
62
-
-
12444345515
-
Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
Thompson A, Schäfer J, Kuhn K, Kienle S, Schwarz J, Schmidt G et al. (2003). Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal Chem 75: 1895-1904.
-
(2003)
Anal Chem
, vol.75
, pp. 1895-1904
-
-
Thompson, A.1
Schäfer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
-
63
-
-
84887086311
-
The impact of temperature on marine phytoplankton resource allocation and metabolism
-
Toseland A, Daines SJ, Clark JR, Kirkham A, Strauss J, Uhlig C et al. (2013). The impact of temperature on marine phytoplankton resource allocation and metabolism. Nat Clim Change 3: 1-6.
-
(2013)
Nat Clim Change
, vol.3
, pp. 1-6
-
-
Toseland, A.1
Daines, S.J.2
Clark, J.R.3
Kirkham, A.4
Strauss, J.5
Uhlig, C.6
-
64
-
-
84905987129
-
GeoChip 4: A functional gene-arraybased high-throughput environmental technology for microbial community analysis
-
e-pub ahead of print 12 February 2014
-
Tu Q, Yu H, He Z, Deng Y, Wu L, Van Nostrand JD et al. (2014). GeoChip 4: a functional gene-arraybased high-throughput environmental technology for microbial community analysis. Mol Ecol Resour; e-pub ahead of print 12 February 2014; doi:10.1111/ 1755-0998.12239.
-
(2014)
Mol Ecol Resour
-
-
Tu, Q.1
Yu, H.2
He, Z.3
Deng, Y.4
Wu, L.5
Van Nostrand, J.D.6
-
65
-
-
0033014680
-
Temperature dependence of switching of the bacterial flagellar motor by the protein CheY(13DK106YW)
-
Turner L, Samuel AD, Stern AS, Berg HC. (1999). Temperature dependence of switching of the bacterial flagellar motor by the protein CheY(13DK106YW). Biophys J 77: 597-603.
-
(1999)
Biophys J
, vol.77
, pp. 597-603
-
-
Turner, L.1
Samuel, A.D.2
Stern, A.S.3
Berg, H.C.4
-
66
-
-
84894783423
-
Impact of warming on phyto-bacterioplankton coupling and bacterial community composition in experimental mesocosms
-
von Scheibner M, Dörge P, Biermann A, Sommer U, Hoppe H-G, Jürgens K. (2014). Impact of warming on phyto-bacterioplankton coupling and bacterial community composition in experimental mesocosms. Environ Microbiol 16: 718-733.
-
(2014)
Environ Microbiol
, vol.16
, pp. 718-733
-
-
Von Scheibner, M.1
Dörge, P.2
Biermann, A.3
Sommer, U.4
Hoppe, H.-G.5
Jürgens, K.6
-
67
-
-
84881014876
-
Sipros/ProRata: A versatile informatics system for quantitative community proteomics
-
Wang Y, Ahn T-H, Li Z, Pan C. (2013). Sipros/ProRata: a versatile informatics system for quantitative community proteomics. Bioinformatics 29: 2064-2065.
-
(2013)
Bioinformatics
, vol.29
, pp. 2064-2065
-
-
Wang, Y.1
Ahn, T.-H.2
Li, Z.3
Pan, C.4
-
68
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
Washburn MP, Wolters D, Yates JR. (2001). Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 19: 242-247.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates, J.R.3
-
69
-
-
84869015286
-
Proteomic analysis of the increased stress tolerance of Saccharomyces cerevisiae encapsulated in liquid core alginate-chitosan capsules
-
Westman JO, Taherzadeh MJ, Franzén CJ. (2012). Proteomic analysis of the increased stress tolerance of Saccharomyces cerevisiae encapsulated in liquid core alginate-chitosan capsules. PLoS One 7: e49335.
-
(2012)
PLoS One
, vol.7
, pp. e49335
-
-
Westman, J.O.1
Taherzadeh, M.J.2
Franzén, C.J.3
-
70
-
-
41549147720
-
Quantitative proteomics analysis demonstrates post-transcriptional regulation of embryonic stem cell differentiation to hematopoiesis
-
Williamson AJK, Smith DL, Blinco D, Unwin RD, Pearson S, Wilson C et al. (2008). Quantitative proteomics analysis demonstrates post-transcriptional regulation of embryonic stem cell differentiation to hematopoiesis. Mol Cell Proteomics 7: 459-472.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 459-472
-
-
Ajk, W.1
Smith, D.L.2
Blinco, D.3
Unwin, R.D.4
Pearson, S.5
Wilson, C.6
-
71
-
-
58549114486
-
Natural acidophilic biofilm communities reflect distinct organismal and functional organization
-
Wilmes P, Remis JP, Hwang M, Auer M, Thelen MP, Banfield JF. (2009). Natural acidophilic biofilm communities reflect distinct organismal and functional organization. ISME J 3: 266-270.
-
(2009)
ISME J
, vol.3
, pp. 266-270
-
-
Wilmes, P.1
Remis, J.P.2
Hwang, M.3
Auer, M.4
Thelen, M.P.5
Banfield, J.F.6
-
73
-
-
66349107956
-
Changes in biogenic carbon flow in response to sea surface warming
-
Wohlers J, Engel A, Zöllner E, Breithaupt P, Jürgens K, Hoppe H-G et al. (2009). Changes in biogenic carbon flow in response to sea surface warming. Proc Natl Acad Sci USA 106: 7067-7072.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 7067-7072
-
-
Wohlers, J.1
Engel, A.2
Zöllner, E.3
Breithaupt, P.4
Jürgens, K.5
Hoppe, H.-G.6
-
74
-
-
84876336439
-
Autotrophic growth of bacterial and archaeal ammonia oxidizers in freshwater sediment microcosms incubated at different temperatures
-
Wu Y, Ke X, Hernández M, Wang B, Dumont MG, Jia Z et al. (2013). Autotrophic growth of bacterial and archaeal ammonia oxidizers in freshwater sediment microcosms incubated at different temperatures. Appl Environ Microbiol 79: 3076-3084.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 3076-3084
-
-
Wu, Y.1
Ke, X.2
Hernández, M.3
Wang, B.4
Dumont, M.G.5
Jia, Z.6
-
75
-
-
84880182120
-
Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea
-
Yelton AP, Comolli LR, Justice NB, Castelle C, Denef VJ, Thomas BC et al. (2013). Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea. BMC Genomics 14: 485-485.
-
(2013)
BMC Genomics
, vol.14
, pp. 485-485
-
-
Yelton, A.P.1
Comolli, L.R.2
Justice, N.B.3
Castelle, C.4
Denef, V.J.5
Thomas, B.C.6
-
76
-
-
84857123742
-
Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments
-
Yergeau E, Bokhorst S, Kang S, Zhou J, Greer CW, Aerts R et al. (2012). Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments. ISME J 6: 692-702.
-
(2012)
ISME J
, vol.6
, pp. 692-702
-
-
Yergeau, E.1
Bokhorst, S.2
Kang, S.3
Zhou, J.4
Greer, C.W.5
Aerts, R.6
-
77
-
-
76049100287
-
A new strain Leptospirillum ferriphilum YTW315 for bioleaching of metal sulfides ores
-
Zhang R-Y, Xia J-L, Peng J-H, Zhang Q, Zhang C-G, Nie Z-Y et al. (2010). A new strain Leptospirillum ferriphilum YTW315 for bioleaching of metal sulfides ores. Trans Nonferrous Met Soc China 20: 135-141.
-
(2010)
Trans Nonferrous Met Soc China
, vol.20
, pp. 135-141
-
-
Zhang, R.-Y.1
Xia, J.-L.2
Peng, J.-H.3
Zhang, Q.4
Zhang, C.-G.5
Nie, Z.-Y.6
-
78
-
-
77950544169
-
ABA-regulated G protein signaling in Arabidopsis guard cells: A proteomic perspective
-
Zhao Z, Stanley BA, Zhang W, Assmann SM. (2010). ABA-regulated G protein signaling in Arabidopsis guard cells: a proteomic perspective. J Proteome Res 9: 1637-1647.
-
(2010)
J Proteome Res
, vol.9
, pp. 1637-1647
-
-
Zhao, Z.1
Stanley, B.A.2
Zhang, W.3
Assmann, S.M.4
-
79
-
-
0030609708
-
Compositional and functional shifts in microbial communities due to soil warming
-
Zogg GP, Zak DR, Ringelberg DB, White DC, MacDonald NW, Pregitzer KS. (1997). Compositional and functional shifts in microbial communities due to soil warming. Soil Sci Soc Am J 61: 475-481.
-
(1997)
Soil Sci Soc Am J
, vol.61
, pp. 475-481
-
-
Zogg, G.P.1
Zak, D.R.2
Ringelberg, D.B.3
White, D.C.4
Macdonald, N.W.5
Pregitzer, K.S.6
|