Sipros/ProRata: A versatile informatics system for quantitative community proteomics

Bioinformatics

Volumn 29, Issue 16, 2013, Pages 2064-2065

  Wang, Yingfeng ^a   Ahn, Tae Hyuk ^a   Li, Zhou ^a   Pan, Chongle ^a  

^a OAK RIDGE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ARTICLE; CHEMISTRY; COMPUTER PROGRAM; METHODOLOGY; PROTEIN DATABASE; PROTEIN PROCESSING; PROTEOMICS; TANDEM MASS SPECTROMETRY; PROCEDURES;

DATABASES, PROTEIN; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEINS; PROTEOMICS; SOFTWARE; TANDEM MASS SPECTROMETRY;

EID: 84881014876     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt329     Document Type: Article

References (5)

1. Breitling, R. et al. (2004) Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Lett., 573, 83-92.
2. Eng, J.K. et al. (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom., 5, 976-989.
3. Hyatt, D. and Pan, C. (2012) Exhaustive database searching for amino acid mutations in proteomes. Bioinformatics, 28, 1895-1901.
4. Pan, C. et al. (2006) ProRata: a quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation. Anal. Chem., 78, 7121-7131.
5. Pan, C. et al. (2011) Quantitative tracking of isotope flows in proteomes of microbial communities. Mol. Cell. Proteomics, 10, M110.006049.