Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community

ISME Journal

Volumn 2, Issue 5, 2008, Pages 542-550

  Jeans, Chris ^a   Singer, Steven W ^a   Chan, Clara S ^b   VerBerkmoes, Nathan C ^c   Shah, Manesh ^c   Hettich, Robert L ^c   Banfield, Jillian F ^b   Thelen, Michael P ^a  

^a LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c OAK RIDGE NATIONAL LABORATORY   (United States)

Author keywords

Acid mine drainage; Biofilm; C type cytochrome; Fe(II) oxidation; Heme; Membrane protein

Indexed keywords

CYTOCHROME; IRON; MEMBRANE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BACTERIUM; BIOFILM; CHEMISTRY; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; OXIDATION REDUCTION REACTION; PH; PHYSIOLOGY;

AMINO ACID SEQUENCE; BACTERIA; BIOFILMS; CYTOCHROMES; GENE EXPRESSION REGULATION, BACTERIAL; HYDROGEN-ION CONCENTRATION; IRON; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION;

EID: 43449096010     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2008.17     Document Type: Article

References (25)

1. Bagos PG, Liakopoulos TD, Spyropoulos IC, Hamodrakas SJ. (2004). PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins. Nucleic Acids Res 32: W400-W404.
2. Baker BJ, Banfield JF. (2003). Microbial communities in acid mine drainage. FEMS Microbiol Ecol 44:139-152.
3. Bathe S, Norris PR. (2007). Ferrous iron- and sulfurinduced genes in Sulfolobus metallicus. Appl Env Microbiol 73: 2491-2497.
4. Bendtsen JD, Nielsen H, von Heijne G, Brunak S. (2004). Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340: 783-795.
5. Berry EA, Trumpower BL. (1987). Simultaneous determination of hemes a, b, and c from pyridine hemochrome spectra. Anal Biochem 161: 1-15.
6. Blake RC, Shute EA, Greenwood MM, Spencer GH, Ingledew WJ, (1993). Enzymes of aerobic respiration on iron. FEMS Microbiol Rev 11: 9-18.
7. Bond PL, Smriga SP, Banfield JF. (2000). Phylogeny of microorganisms populating a thick, subaerial, predominantly lithotrophic biofilm at an extreme acid mine drainage site. Appl Env Microbiol 66: 3842-3849.
8. Druschel GK, Baker BJ, Gihring TM, Banfield JF. (2004). Acid mine drainage biogeochemistry at Iron Mountain, California. Geoc Trans 5: 13-32.
9. Francis RT, Becker RR. (1984). Specific indication of hemoproteins in Polyacrylamide gels using a double-staining process. Anal Biochem 136: 509-514.
10. Kappler U, Sly LI, McEwan AG. (2005). Respiratory gene clusters of Metallosphaera sedula - differential expression and transcriptional organization. Microbiol 151: 35-43.
11. Kruger M, Meyerdierks A, Glockner FO, Amann R, Widdel F, Kube M et al. (2003). A conspicuous nickel protein in microbial mats that oxidize methane anaerobically. Nature 426: 878-881.
12. Lo I, Denef VJ, VerBerkmoes NC, Shah MB, Goltsman D, DiBartolo G ef al. (2007). Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature 446: 537-541.
13. Marshall MJ, Beliaev AS, Dohnalkova AC, Kennedy DW, Shi L, Wang ZM et al. (2006). c-Type cyto-chrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis. PLoS Biol 4: 1324-1333.
14. Newman DK, Banfield JF. (2002). Geomicrobiology: how molecular-scale interactions underpin biogeochemical systems. Science 296: 1071-1077.
15. Ram RJ, VerBerkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC et al. (2005). Community proteomics of a natural microbial biofilm. Science 308: 1915-1920.
16. Reddy KS, Angiolillo PJ, Wright WW, Laberge M, Vanderkooi JM. (1996). Spectral splitting in the alpha (Q(0,0)) absorption band of ferrous cytochrome c and other heme proteins. Biochemistry 35: 12820-12830.
17. Schagger H, Cramer WA, Vonjagow G. (1994). Analysis of molecular masses and oligomeric states of protein complexes by Blue Native electrophoresis and isolation of membrane-protein complexes by 2-dimensional native electrophoresis. Anal Biochem 217: 220-230.
18. Seddon AA, Curnow P, Booth PJ. (2004). Membrane proteins, lipids and detergents: not just a soap opera. Biochim Biophys Acta-Biomembranes 1666: 105-117.
19. Singer PC, Stumm W. (1970). Acidic mine drainage. Rate-determining step. Science 167: 1121-1123.
20. Stenberg F, Chovanec P, Maslen SL, Robinson CV, flag LL, von Heijne G et al. (2005). Protein complexes of the Escherichia coli cell envelope. J Biol Chem 280: 34409-34419.
21. Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM et al. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43.
22. Weber KA, Achenbach LA, Coates JD. (2006). Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction. Nature Rev Microbiol 4: 752-764.
23. Yarzabal A, Appia-Ayme C, Ratouchniak J, Bonnefoy V. (2004). Regulation of the expression of the Acidithiobacillus ferrooxidans rus operon encoding two cytochromes c, a cytochrome oxidase and rusticyanin. Microbiol 150: 2113-2123.
24. Yarzabal A, Brasseur G, Ratouchniak J, Lund K, Lemesle-Meunier D, DeMoss JA et al. (2002). The high-molecular-weight cytochrome c Cyc2 of Acidithiobacillus ferrooxidans is an outer membrane protein. J Bacteriol 184: 313-317.
25. Zhuang JY, Reddi AR, Wang ZH, Khodaverdian B, Hegg EL, Gibney BR. (2006). Evaluating the roles of the heme a side chains in cytochrome c oxidase using designed heme proteins. Biochemistry 45: 12530-12538.