Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array

Acta Crystallographica Section D: Biological Crystallography

Volumn 71, Issue , 2015, Pages 928-940

  Lyubimov, Artem Y ^a   Murray, Thomas D ^b,c   Koehl, Antoine ^a   Araci, Ismail Emre ^a,d   Uervirojnangkoorn, Monarin ^a   Zeldin, Oliver B ^a   Cohen, Aina E ^e   Soltis, S Michael ^e   Baxter, Elizabeth L ^e   Brewster, Aaron S ^f   Sauter, Nicholas K ^f   Brunger, Axel T ^a   Berger, James M ^c  

^a STANFORD UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d Stanford University   (United States)

^e SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^f LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

crystal harvesting; microfluidics; sample delivery; serial crystallography; XFELs

Indexed keywords

HEN EGG LYSOZYME; LYSOZYME;

ANIMAL; CHEMICAL STRUCTURE; CHEMISTRY; CHICKEN; CRYSTALLIZATION; DEVICES; EQUIPMENT DESIGN; LAB ON A CHIP; PROTEIN CONFORMATION; X RAY CRYSTALLOGRAPHY;

ANIMALS; CHICKENS; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; EQUIPMENT DESIGN; LAB-ON-A-CHIP DEVICES; MODELS, MOLECULAR; MURAMIDASE; PROTEIN CONFORMATION;

EID: 84927619968     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S1399004715002308     Document Type: Article

References (63)

1. Adams, P. D., et al. (2010). Acta Cryst. D66, 213-221
2. Berman, H., Henrick, K. & Nakamura, H. (2003). Nature Struct. Biol. 10, 980
3. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235-242
4. Boutet, S., et al. (2012). Science, 337, 362-364
5. Brunger, A. T. (2007). Nature Protoc. 2, 2728-2733
6. Carlo, D. D., Wu, L. Y. & Lee, L. P. (2006). Lab Chip, 6, 1445-1449
7. Chapman, H. N., et al. (2006). Nature Phys. 2, 839-843
8. Chapman, H. N., et al. (2011). Nature (London), 470, 73-77
9. Chung, J., Kim, Y.-J. & Yoon, E. (2011). Appl. Phys. Lett. 98, 123701
10. Cohen, A. E., et al. (2014). Proc. Natl Acad. Sci. USA, 111, 17122-17127
11. Crane, M. M., Clark, I. B., Bakker, E., Smith, S. & Swain, P. S. (2014). PLoS One, 9, e100042
12. Cusack, S., Belrhali, H., Bram, A., Burghammer, M., Perrakis, A. & Riekel, C. (1998). Nature Struct. Mol. Biol. 5, 634-637
13. DePonte, D. P., Weierstall, U., Schmidt, K., Warner, J., Starodub, D., Spence, J. C. H. & Doak, R. B. (2008). J. Phys. D Appl. Phys. 41, 195505
14. Dhouib, K., Khan Malek, C., Pfleging, W., Gauthier-Manuel, B., Duffait, R., Thuillier, G., Ferrigno, R., Jacquamet, L., Ohana, J., Ferrer, J.-L., Théobald-Dietrich, A., Giegé, R., Lorber, B. & Sauter, C. (2009). Lab Chip, 9, 1412-1421
15. Emma, P., et al. (2010). Nature Photonics, 4, 641-647
16. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486-501
17. Falkner, J. C., Al-Somali, A. M., Jamison, J. A., Zhang, J., Adrianse, S. L., Simpson, R. L., Calabretta, M. K., Radding, W., Phillips, G. N. Jr & Colvin, V. L. (2005). Chem. Mater. 17, 2679-2686
18. Fraser, J. S., Clarkson, M. W., Degnan, S. C., Erion, R., Kern, D. & Alber, T. (2009). Nature (London), 462, 669-673
19. Fraser, J. S., van den Bedem, H., Samelson, A. J., Lang, P. T., Holton, J. M., Echols, N. & Alber, T. (2011). Proc. Natl Acad. Sci. USA, 108, 16247-16252
20. Gerdts, C. J., Elliott, M., Lovell, S., Mixon, M. B., Napuli, A. J., Staker, B. L., Nollert, P. & Stewart, L. (2008). Acta Cryst. D64, 1116-1122
21. Greaves, E. D. & Manz, A. (2005). Lab Chip, 5, 382-391
22. Guha, S., Perry, S. L., Pawate, A. S. & Kenis, P. J. (2012). Sens. Actuators B Chem. 174, 1-9
23. Halle, B. (2004). Proc. Natl Acad. Sci. USA, 101, 4793-4798
24. Hansen, C. L., Classen, S., Berger, J. M. & Quake, S. R. (2006). J. Am. Chem. Soc. 128, 3142-3143
25. Hansen, C. L., Skordalakes, E., Berger, J. M. & Quake, S. R. (2002). Proc. Natl Acad. Sci. USA, 99, 16531-16536
26. Hattne, J., et al. (2014). Nature Methods, 11, 545-548
27. Heymann, M., Opthalage, A., Wierman, J. L., Akella, S., Szebenyi, D. M. E., Gruner, S. M. & Fraden, S. (2014). IUCrJ, 1, 349-360
28. Hirata, K., et al. (2014). Nature Methods, 11, 734-736
29. Hope, H. (1988). Acta Cryst. B44, 22-26
30. Hunter, M. S., et al. (2014). Sci. Rep. 4, 6026
31. Keedy, D. A., van den Bedem, H., Sivak, D. A., Petsko, G. A., Ringe, D., Wilson, M. A. & Fraser, J. S. (2014). Structure, 22, 899-910
32. Kern, J., et al. (2012). Proc. Natl Acad. Sci. USA, 109, 9721-9726
33. Kern, J., et al. (2013). Science, 340, 491-495
34. Kern, J., et al. (2014). Nature Commun. 5, 4371
35. Kirian, R. A., Wang, X., Weierstall, U., Schmidt, K. E., Spence, J. C. H., Hunter, M., Fromme, P., White, T., Chapman, H. N. & Holton, J. (2010). Opt. Express, 18, 5713-5723
36. Kupitz, C., Basu, S., et al. (2014). Nature (London), 513, 261-265
37. Kupitz, C., Grotjohann, I., Conrad, C. E., Roy-Chowdhury, S., Fromme, R. & Fromme, P. (2014). Philos. Trans. R. Soc. Lond. B Biol. Sci. 369, 20130316
38. Li, L., Du, W. & Ismagilov, R. F. (2010). J. Am. Chem. Soc. 132, 112-119
39. Li, L., Mustafi, D., Fu, Q., Tereshko, V., Chen, D. L., Tice, J. D. & Ismagilov, R. F. (2006). Proc. Natl Acad. Sci. USA, 103, 19243-19248
40. Liu, W., et al. (2013). Science, 342, 1521-1524
41. McCoy, A. J. (2007). Acta Cryst. D63, 32-41
42. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674
43. McPherson, A. & Kuznetsov, Y. G. (2014). Acta Cryst. F70, 384-403
44. Nilsson, J., Evander, M., Hammarström, B. & Laurell, T. (2009). Anal. Chim. Acta, 649, 141-157
45. Perry, S. L., Guha, S., Pawate, A. S., Bhaskarla, A., Agarwal, V., Nair, S. K. & Kenis, P. J. A. (2013). Lab Chip, 13, 3183-3187
46. Pinker, F., Brun, M., Morin, P., Deman, A. L., Chateaux, J.-F., Olié ric, V., Stirnimann, C., Lorber, B., Terrier, N., Ferrigno, R. & Sauter, C. (2013). Cryst. Growth Des. 13, 3333-3340
47. Redecke, L., et al. (2013). Science, 339, 227-230
48. Sauter, C., Dhouib, K. & Lorber, B. (2007). Cryst. Growth Des. 7, 2247-2250
49. Sawaya, M. R., et al. (2014). Proc. Natl Acad. Sci. USA, 111, 12769-12774
50. Sierra, R. G., et al. (2012). Acta Cryst. D68, 1584-1587
51. Skelley, A. M., Kirak, O., Suh, H., Jaenisch, R. & Voldman, J. (2009). Nature Methods, 6, 147-152
52. Smith, J. L., Fischetti, R. F. & Yamamoto, M. (2012). Curr. Opin. Struct. Biol. 22, 602-612
53. Soliman, A. S. M., Warkentin, M., Apker, B. & Thorne, R. E. (2011). Acta Cryst. D67, 646-656
54. Stevenson, H. P., DePonte, D. P., Makhov, A. M., Conway, J. F., Zeldin, O. B., Boutet, S., Calero, G. & Cohen, A. E. (2014). Philos. Trans. R. Soc. B Biol. Sci. 369, 20130322
55. Tan, W.-H. & Takeuchi, S. (2007). Proc. Natl Acad. Sci. USA, 104, 1146-1151
56. Tilton, R. F. Jr, Dewan, J. C. & Petsko, G. A. (1992). Biochemistry, 31, 2469-2481
57. Uervirojnangkoorn, M., Zeldin, O. B., Lyubimov, A. Y., Hattne, J., Brewster, A. S., Sauter, N. K., Brunger, A.T. & Weis, W. I. (2015). eLife, 10.7554/eLife.05421
58. Unger, M. A., Chou, H. P., Thorsen, T., Scherer, A. & Quake, S. R. (2000). Science, 288, 113-116
59. Urzhumtseva, L., Afonine, P. V., Adams, P. D. & Urzhumtsev, A. (2009). Acta Cryst. D65, 297-300
60. Weierstall, U. (2014). Philos. Trans. R. Soc. B Biol. Sci. 369, 20130337
61. Weierstall, U., et al. (2014). Nature Commun. 5, 3309
62. Zeldin, O. B., Gerstel, M. & Garman, E. F. (2013). J. Appl. Cryst. 46, 1225-1230
63. Zhu, Y., Zhu, L.-N., Guo, R., Cui, H.-J., Ye, S. & Fang, Q. (2014). Sci. Rep. 4, 5046