-
1
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution. Acta Crystallographica. Section D
-
Adams, P. D., Afonine, P. V, Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., et al. (2010). PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallographica. Section D, Biological Crystallography, 66(2), 213–21. doi:10.1107/S0907444909052925.
-
(2010)
Biological Crystallography
, vol.66
, Issue.2
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
-
2
-
-
84860273177
-
Towards automated crystallographic structure refinement with phenix.Refine. Acta Crystallographica
-
Afonine, P. V, Grosse-Kunstleve, R. W., Echols, N., Headd, J. J., Moriarty, N. W., Mustyakimov, M., et al. (2012). Towards automated crystallographic structure refinement with phenix.refine. Acta Crystallographica. Section D, 68(4), 352–67. doi:10.1107/S0907444912001308.
-
(2012)
Section D
, vol.68
, Issue.4
, pp. 352-367
-
-
Afonine, P.V.1
Grosse-Kunstleve, R.W.2
Echols, N.3
Headd, J.J.4
Moriarty, N.W.5
Mustyakimov, M.6
-
3
-
-
84867043897
-
Demonstration of self-seeding in a hard-X-ray free-electron laser
-
Amann, J., Berg, W., Blank, V., Decker, F.-J., Ding, Y., Emma, P., et al. (2012). Demonstration of self-seeding in a hard-X-ray free-electron laser. Nature Photonics, 6(10), 693–698. doi:10.1038/nphoton.2012.180.
-
(2012)
Nature Photonics
, vol.6
, Issue.10
, pp. 693-698
-
-
Amann, J.1
Berg, W.2
Blank, V.3
Decker, F.-J.4
Ding, Y.5
Emma, P.6
-
4
-
-
84875766495
-
X-ray free electron lasers motivate bioanalytical characterization of protein nanocrystals: Serial femtosecond crystallography
-
Bogan, M. J. (2013). X-ray free electron lasers motivate bioanalytical characterization of protein nanocrystals: serial femtosecond crystallography. Analytical Chemistry, 85(7), 3464–71. doi:10.1021/ac303716r.
-
(2013)
Analytical Chemistry
, vol.85
, Issue.7
, pp. 3464-3471
-
-
Bogan, M.J.1
-
5
-
-
0021464515
-
Collective instabilities and highgain regime in a free electron laser
-
Bonifacio, R., Pellegrini, C., & Narducci, L. M. (1984). Collective instabilities and highgain regime in a free electron laser. Optics Communications, 50(6), 373–378. doi:10.1016/0030-4018(84)90105-6.
-
(1984)
Optics Communications
, vol.50
, Issue.6
, pp. 373-378
-
-
Bonifacio, R.1
Pellegrini, C.2
Narducci, L.M.3
-
6
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography. Acta Crystallographica. Section D
-
Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. a, Immormino, R. M., Kapral, G. J., et al. (2010). MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallographica. Section D, Biological Crystallography, 66(1), 12–21. doi:10.1107/S0907444909042073.
-
(2010)
Biological Crystallography
, vol.66
, Issue.1
, pp. 12-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
-
7
-
-
84982057076
-
Goniometer-based femtosecond crystallography
-
Cohen, A. E., Soltis, S. M., Gonzalez, A., Aguila, L., Alonso-Mori, R., Barnes, C. O., et al. (2014). Goniometer-based femtosecond crystallography. Proceedings of the National Academy of Sciences of the United States of America, 111(48), 17122–17127. doi:10.1073/pnas.1418733111.
-
(2014)
Proceedings of the National Academy of Sciences of the United States of America
, vol.111
, Issue.48
, pp. 17122-17127
-
-
Cohen, A.E.1
Soltis, S.M.2
Gonzalez, A.3
Aguila, L.4
Alonso-Mori, R.5
Barnes, C.O.6
-
8
-
-
53449087721
-
Gas dynamic virtual nozzle for generation of microscopic droplet streams
-
DePonte, D. P., Weierstall, U., Schmidt, K., Warner, J., Starodub, D., Spence, J. C. H., & Doak, R. B. (2008). Gas dynamic virtual nozzle for generation of microscopic droplet streams. Journal of Physics D: Applied Physics, 41(19), 195505. doi:10.1088/0022-3727/41/19/195505.
-
(2008)
Journal of Physics D: Applied Physics
, vol.41
, Issue.19
-
-
Deponte, D.P.1
Weierstall, U.2
Schmidt, K.3
Warner, J.4
Starodub, D.5
Spence, J.6
Doak, R.B.7
-
9
-
-
84879356953
-
Better models by discarding data?
-
Diederichs, K., & Karplus, P. a. (2013). Better models by discarding data? Acta Crystallographica Section D Biological Crystallography, 69(7), 1215–1222. doi:10.1107/S0907444913001121.
-
(2013)
Acta Crystallographica Section D Biological Crystallography
, vol.69
, Issue.7
, pp. 1215-1222
-
-
Diederichs, K.1
Karplus, P.A.2
-
10
-
-
77949535720
-
Features and development of Coot. Acta Crystallographica. Section D
-
Emsley, P., Lohkamp, B., Scott, W. G., & Cowtan, K. (2010). Features and development of Coot. Acta Crystallographica. Section D, Biological Crystallography, 66(4), 486–501. doi:10.1107/S0907444910007493.
-
(2010)
Biological Crystallography
, vol.66
, Issue.4
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
11
-
-
77950813607
-
Radiation damage in macromolecular crystallography: What is it and why should we care?
-
Garman, E. F. (2010). Radiation damage in macromolecular crystallography: what is it and why should we care? Acta Crystallographica Section D Biological Crystallography, 66(Pt 4), 339–51. doi:10.1107/S0907444910008656.
-
(2010)
Acta Crystallographica Section D Biological Crystallography
, vol.66
, pp. 339-351
-
-
Garman, E.F.1
-
12
-
-
0036111645
-
The Computational Crystallography Toolbox: Crystallographic algorithms in a reusable software framework
-
Grosse-Kunstleve, R. W., Sauter, N. K., Moriarty, N. W., & Adams, P. D. (2002). The Computational Crystallography Toolbox: crystallographic algorithms in a reusable software framework. Journal of Applied Crystallography, 35(1), 126–136. doi:10.1107/S0021889801017824.
-
(2002)
Journal of Applied Crystallography,
, vol.35
, Issue.1
, pp. 126-136
-
-
Grosse-Kunstleve, R.W.1
Sauter, N.K.2
Moriarty, N.W.3
Adams, P.D.4
-
13
-
-
84899967527
-
Accurate macromolecular structures using minimal measurements from X-ray freeelectron lasers
-
Hattne, J., Echols, N., Tran, R., Kern, J., Gildea, R. J., Brewster, A. S., et al. (2014). Accurate macromolecular structures using minimal measurements from X-ray freeelectron lasers. Nature Methods, 11, 545–548. doi:10.1038/nmeth.2887.
-
(2014)
Nature Methods
, vol.11
, pp. 545-548
-
-
Hattne, J.1
Echols, N.2
Tran, R.3
Kern, J.4
Gildea, R.J.5
Brewster, A.S.6
-
14
-
-
84903612491
-
Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL
-
Hirata, K., Shinzawa-Itoh, K., Yano, N., Takemura, S., Kato, K., Hatanaka, M., et al. (2014). Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL. Nature Methods, 11(7), 734–6. doi:10.1038/nmeth.2962.
-
(2014)
Nature Methods
, vol.11
, Issue.7
, pp. 734-736
-
-
Hirata, K.1
Shinzawa-Itoh, K.2
Yano, N.3
Takemura, S.4
Kato, K.5
Hatanaka, M.6
-
15
-
-
0028892387
-
Structural analysis of zinc substitutions in the active site of thermolysin
-
Holland, D. R., Hausrath, A C., Juers, D., & Matthews, B. W. (1995). Structural analysis of zinc substitutions in the active site of thermolysin. Protein Science: A Publication of the Protein Society, 4, 1955–1965. doi:10.1002/pro.5560041001.
-
(1995)
Protein Science: A Publication of the Protein Society
, vol.4
, pp. 1955-1965
-
-
Holland, D.R.1
Hausrath, A.C.2
Juers, D.3
Matthews, B.W.4
-
16
-
-
36249029917
-
Changes to crystals of Escherichia coli beta-galactosidase during room-temperature/low-temperature cycling and their relation to cryo-annealing. Acta Crystallographica. Section D
-
Juers, D. H., Lovelace, J., Bellamy, H. D., Snell, E. H., Matthews, B. W., & Borgstahl, G. E. O. (2007). Changes to crystals of Escherichia coli beta-galactosidase during room-temperature/low-temperature cycling and their relation to cryo-annealing. Acta Crystallographica. Section D, Biological Crystallography, 63(Pt 11), 1139–53. doi:10.1107/S0907444907045040.
-
(2007)
Biological Crystallography
, vol.63
, pp. 1139-1153
-
-
Juers, D.H.1
Lovelace, J.2
Bellamy, H.D.3
Snell, E.H.4
Matthews, B.W.5
Borgstahl, G.6
-
17
-
-
84905492809
-
Processing of X-ray snapshots from crystals in random orientations
-
Kabsch, W. (2014). Processing of X-ray snapshots from crystals in random orientations. Acta Crystallographica Section D Biological Crystallography, 70(8), 2204–2216. doi:10.1107/S1399004714013534.
-
(2014)
Acta Crystallographica Section D Biological Crystallography
, vol.70
, Issue.8
, pp. 2204-2216
-
-
Kabsch, W.1
-
18
-
-
0001367601
-
Macromolecular crystallography with synchrotron radiation: Photographic data collection and polarization correction
-
Kahn, R., Fourme, R., Gadet, a., Janin, J., Dumas, C., & André, D. (1982). Macromolecular crystallography with synchrotron radiation: photographic data collection and polarization correction. Journal of Applied Crystallography, 15(3), 330–337. doi:10.1107/S0021889882012060.
-
(1982)
Journal of Applied Crystallography
, vol.15
, Issue.3
, pp. 330-337
-
-
Kahn, R.1
Fourme, R.2
Gadet, A.3
Janin, J.4
Dumas, C.5
André, D.6
-
19
-
-
77949588458
-
Femtosecond protein nanocrystallography-data analysis methods
-
Kirian, R. A., Wang, X., Weierstall, U., Schmidt, K. E., Spence, J. C. H., Hunter, M., et al. (2010). Femtosecond protein nanocrystallography-data analysis methods. Optics Express, 18(6), 5713–23. doi:10.1364/OE.18.005713.
-
(2010)
Optics Express
, vol.18
, Issue.6
, pp. 5713-5723
-
-
Kirian, R.A.1
Wang, X.2
Weierstall, U.3
Schmidt, K.E.4
Spence, J.5
Hunter, M.6
-
20
-
-
0000398656
-
Generation of Coherent Radiation by a Relativistic Electron Beam in an Undulator
-
Kondratenko, A. M., & Saldin, E. L. (1979). Generation of Coherent Radiation by a Relativistic Electron Beam in an Undulator. Sov. Phys. Dokl., 24(12), 986.
-
(1979)
Sov. Phys. Dokl.
, vol.24
, Issue.12
, pp. 986
-
-
Kondratenko, A.M.1
Saldin, E.L.2
-
21
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., & Read, R. J. (2007). Phaser crystallographic software. Journal of Applied Crystallography, 40(4), 658–674. doi:10.1107/S0021889807021206.
-
(2007)
Journal of Applied Crystallography
, vol.40
, Issue.4
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
22
-
-
0032169322
-
A Description of Imperfections in Protein Crystals
-
Nave, C. (1998). A Description of Imperfections in Protein Crystals. Acta Crystallographica Section D Biological Crystallography, 54(5), 848–853. doi:10.1107/S0907444998001875.
-
(1998)
Acta Crystallographica Section D Biological Crystallography
, vol.54
, Issue.5
, pp. 848-853
-
-
Nave, C.1
-
23
-
-
84899815708
-
Matching X-ray beam and detector properties to protein crystals of different perfection
-
Nave, C. (2014). Matching X-ray beam and detector properties to protein crystals of different perfection. Journal of Synchrotron Radiation, 21(3). doi:10.1107/S1600577514003609.
-
(2014)
Journal of Synchrotron Radiation
, vol.21
, Issue.3
-
-
Nave, C.1
-
24
-
-
0034680144
-
Potential for biomolecular imaging with femtosecond X-ray pulses
-
Retrieved from
-
Neutze, R., Wouts, R., van der Spoel, D., Weckert, E., & Hajdu, J. (2000). Potential for biomolecular imaging with femtosecond X-ray pulses. Nature, 406(6797), 752–7. Retrieved from http://dx.doi.org/10.1038/35021099.
-
(2000)
Nature
, vol.406
, Issue.6797
, pp. 752-757
-
-
Neutze, R.1
Wouts, R.2
Van Der Spoel, D.3
Weckert, E.4
Hajdu, J.5
-
25
-
-
34247500374
-
Python for Scientific Computing
-
Oliphant, T. E. (2007). Python for Scientific Computing. Computing in Science & Engineering, 9(3), 10–20. doi:10.1109/MCSE.2007.58.
-
(2007)
Computing in Science & Engineering
, vol.9
, Issue.3
, pp. 10-20
-
-
Oliphant, T.E.1
-
26
-
-
0001117601
-
Processing and post-refinement of oscillation camera data
-
Rossmann, M. G., Leslie, A. G. W., Abdel-Meguid, S. S., & Tsukihara, T. (1979). Processing and post-refinement of oscillation camera data. Journal of Applied Crystallography, 12, 570–581. doi:10.1107/S0021889879013273.
-
(1979)
Journal of Applied Crystallography
, vol.12
, pp. 570-581
-
-
Rossmann, M.G.1
Leslie, A.2
Abdel-Meguid, S.S.3
Tsukihara, T.4
-
27
-
-
84924243435
-
XFEL diffraction: Developing processing methods to optimize data quality
-
Sauter, N. K. (2015). XFEL diffraction: developing processing methods to optimize data quality. Journal of Synchrotron Radiation, 22, 239–248. doi:10.1107/S1600577514028203.
-
(2015)
Journal of Synchrotron Radiation
, vol.22
, pp. 239-248
-
-
Sauter, N.K.1
-
28
-
-
84916896473
-
Improved crystal orientation and physical properties from single-shot XFEL stills
-
Sauter, N. K., Hattne, J., Brewster, A. S., Echols, N., Zwart, P. H., & Adams, P. D. (2014). Improved crystal orientation and physical properties from single-shot XFEL stills. Acta Crystallographica Section D Biological Crystallography, 70, 3299–3309. doi:10.1107/S1399004714024134.
-
(2014)
Acta Crystallographica Section D Biological Crystallography
, vol.70
, pp. 3299-3309
-
-
Sauter, N.K.1
Hattne, J.2
Brewster, A.S.3
Echols, N.4
Zwart, P.H.5
Adams, P.D.6
-
29
-
-
84879384824
-
New Pythonbased methods for data processing. Acta Crystallographica. Section D
-
Sauter, N. K., Hattne, J., Grosse-Kunstleve, R. W., & Echols, N. (2013). New Pythonbased methods for data processing. Acta Crystallographica. Section D, Biological Crystallography, 69(Pt 7), 1274–82. doi:10.1107/S0907444913000863.
-
(2013)
Biological Crystallography
, vol.69
, pp. 1274-1282
-
-
Sauter, N.K.1
Hattne, J.2
Grosse-Kunstleve, R.W.3
Echols, N.4
-
30
-
-
84867837841
-
Nanoflow electrospinning serial femtosecond crystallography. Acta Crystallographica. Section D
-
Sierra, R. G., Laksmono, H., Kern, J., Tran, R., Hattne, J., Alonso-Mori, R., et al. (2012). Nanoflow electrospinning serial femtosecond crystallography. Acta Crystallographica. Section D, Biological Crystallography, 68(Pt 11), 1584–7.doi:10.1107/S0907444912038152.
-
(2012)
Biological Crystallography
, vol.68
, pp. 1584-1587
-
-
Sierra, R.G.1
Laksmono, H.2
Kern, J.3
Tran, R.4
Hattne, J.5
Alonso-Mori, R.6
-
31
-
-
84967450311
-
Imaging biological specimens with high-intensity soft x rays
-
Solem, J. C. (1986). Imaging biological specimens with high-intensity soft x rays. Journal of the Optical Society of America B, 3(11), 1551. doi:10.1364/JOSAB.3.001551.
-
(1986)
Journal of the Optical Society of America B
, vol.3
, Issue.11
, pp. 1551
-
-
Solem, J.C.1
-
32
-
-
61349202081
-
Crystallographic model quality at a glance. Acta Crystallographica. Section D
-
Urzhumtseva, L., Afonine, P. V, Adams, P. D., & Urzhumtsev, A. (2009). Crystallographic model quality at a glance. Acta Crystallographica. Section D, Biological Crystallography, 65(3), 297–300. doi:10.1107/S0907444908044296.
-
(2009)
Biological Crystallography
, vol.65
, Issue.3
, pp. 297-300
-
-
Urzhumtseva, L.1
Afonine, P.V.2
Adams, P.D.3
Urzhumtsev, A.4
-
33
-
-
84894037590
-
Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography
-
Weierstall, U., James, D., Wang, C., White, T. A., Wang, D., Liu, W., et al. (2014). Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography. Nature Communications, 5. doi:10.1038/ncomms4309.
-
(2014)
Nature Communications
, pp. 5
-
-
Weierstall, U.1
James, D.2
Wang, C.3
White, T.A.4
Wang, D.5
Liu, W.6
-
34
-
-
84902675175
-
Post-refinement method for snapshot serial crystallography Postrefinement method for snapshot serial crystallography
-
White, T. A. (2014). Post-refinement method for snapshot serial crystallography Postrefinement method for snapshot serial crystallography. Phil. Trans. R. Soc. B, 369. doi:10.1098/rstb.2013.0330.
-
(2014)
Phil. Trans. R. Soc. B
, pp. 369
-
-
White, T.A.1
-
35
-
-
84924961488
-
The Oscillation Method for Crystals with Very Large Unit Cells. Acta Crystallographica. Section A
-
Winkler, F. K., Schutt, C.., & Harrison, S. C. (1979). The Oscillation Method for Crystals with Very Large Unit Cells. Acta Crystallographica. Section A, Foundations of Crystallography, (35), 901–911. doi:10.1107/S0567739479002035.
-
(1979)
Foundations of Crystallography, (35)
, pp. 901-911
-
-
Winkler, F.K.1
Schutt, C.2
Harrison, S.C.3
-
36
-
-
79953737180
-
Overview of the CCP4 suite and current developments. Acta Crystallographica. Section D
-
Winn, M. D., Ballard, C. C., Cowtan, K. D., Dodson, E. J., Emsley, P., Evans, P. R., et al. (2011). Overview of the CCP4 suite and current developments. Acta Crystallographica. Section D, Biological Crystallography, 67(4), 235–42. doi:10.1107/S0907444910045749.
-
(2011)
Biological Crystallography
, vol.67
, Issue.4
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
-
37
-
-
84890818510
-
Predicting the X-ray lifetime of protein crystals
-
Zeldin, O. B., Brockhauser, S., Bremridge, J., Holton, J. M., & Garman, E. F. (2013). Predicting the X-ray lifetime of protein crystals. Proceedings of the National Academy of Sciences of the United States of America, 110(51), 20551–6. doi:10.1073/pnas.1315879110.
-
(2013)
Proceedings of the National Academy of Sciences of the United States of America
, vol.110
, Issue.51
, pp. 20551-20556
-
-
Zeldin, O.B.1
Brockhauser, S.2
Bremridge, J.3
Holton, J.M.4
Garman, E.F.5
-
38
-
-
33645160257
-
Automated diffraction image analysis and spot searching for high-throughput crystal screening
-
Zhang, Z., Sauter, N. K., Van Den Bedem, H., Snell, G., & Deacon, A. M. (2006). Automated diffraction image analysis and spot searching for high-throughput crystal screening. Journal of Applied Crystallography, 39, 112–119. doi:10.1107/S0021889805040677.
-
(2006)
Journal of Applied Crystallography
, vol.39
, pp. 112-119
-
-
Zhang, Z.1
Sauter, N.K.2
Van Den Bedem, H.3
Snell, G.4
Deacon, A.M.5
-
39
-
-
84864255895
-
A single-shot transmissive spectrometer for hard x-ray free electron lasers
-
Zhu, D., Cammarata, M., Feldkamp, J. M., Fritz, D. M., Hastings, J. B., Lee, S., et al. (2012). A single-shot transmissive spectrometer for hard x-ray free electron lasers. Applied Physics Letters, 101(3), 034103. doi:10.1063/1.4736725.
-
(2012)
Applied Physics Letters
, vol.101
, Issue.3
-
-
Zhu, D.1
Cammarata, M.2
Feldkamp, J.M.3
Fritz, D.M.4
Hastings, J.B.5
Lee, S.6
|