PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification

Nucleic Acids Research

Volumn 31, Issue 1, 2003, Pages 334-341

  Thomas, Paul D ^a   Kejariwal, Anish ^a   Campbell, Michael J ^a   Mi, Huaiyu ^a   Diemer, Karen ^a   Guo, Nan ^a   Ladunga, Istvan ^a   Ulitsky Lazareva, Betty ^a   Muruganujan, Anushya ^a   Rabkin, Steven ^a   Vandergriff, Jody A ^a   Doremieux, Oliver ^a  

^a CELERA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT;

ACCURACY; AMINO ACID SEQUENCE; AUTOMATION; CLASSIFICATION; DROSOPHILA MELANOGASTER; GENBANK; HIDDEN MARKOV MODEL; HUMAN; INTERNET; MEDICAL INFORMATION SYSTEM; MOLECULAR PHYLOGENY; NONHUMAN; PANTHER DATABASE; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FUNCTION; REVIEW; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE; SEQUENCE HOMOLOGY; STATISTICAL MODEL;

ANIMALS; DATABASES, PROTEIN; HUMANS; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; PROTEINS; SEQUENCE ALIGNMENT;

DROSOPHILA MELANOGASTER; MELANOGASTER;

EID: 0037249501     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg115     Document Type: Review

References (10)

1. Thomas,P.D., Campbell,M.J., Kejariwal,A., Mi,H., Karlak,B., Daverman,R., Diemer,K. and Muruganujan,A. PANTHER: a library of protein families and subfamilies indexed by function, submitted.
2. Venter,J.C., Adams,M.D., Myers,E.W., Li,P.W., Mural,R.J. et al. (2001) The sequence of the human genome. Science, 291, 1304-1351.
3. Mi,H., Vandergriff,J., Campbell,M., Narechania,A., Lewis,S., Thomas,P.D. and Ashburner,M. Assessment of genome-wide protein function classification for Drosophila melanogaster, submitted.
4. Sonnhammer,E.L., Eddy,S.R. and Durbin,R. (1997) Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins, 28, 405-420.
5. Schultz,J., Milpetz,E, Bork,P. and Ponting,C.P. (1998) SMART, a simple modular architecture research tool: identification of signaling domains. Proc. Natl Acad. Sci. USA, 95, 5857-5864.
6. Pruitt,K.D., Katz,K.S., Sicotte,H. and Maglott,D.R. (2000) Introducing RefSeq and LocusLink: curated human genome resources at the NCBI. Trends Genet., 16, 44-47.
7. Kerlavage,A., Bonazzi,V., di Tommaso,M., Lawrence,C., Li,P., Mayberry,F., Mural,R., Nodell,M., Yandell,M., Zhang,J. and Thomas,P.D. (2002) The Celera Discovery System. Nucleic Acids Res., 30, 129-136.
8. Ashburner,M., Ball,C.A., Blake,J.A., Botstein,D., Butler,H., Cherry,J.M., Davis,A.P., Dolinski,K., Dwight,S.S., Eppig,J.T., Harris,M.A., Hill,D.P., Issel-Tarver,L., Kasarskis,A., Lewis,S., Matese,J.C., Richardson,J.E., Ringwald,M., Rubin,G.M. and Sherlock,G. (2000) Gene ontology: tool for the unification of biology. Nature Genet., 25, 25-29.
9. Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
10. Bairoch,A. and Apweiler,R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 28, 45-48.