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Volumn 105, Issue 21, 2008, Pages 7500-7505

Modularity of stress response evolution

Author keywords

Chemotaxis; Competence; Module; Regulatory; Sporulation

Indexed keywords

ARTICLE; CHEMOTAXIS; COMPETENCE; EVOLUTION; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; SPOROGENESIS; STRESS; ARCHAEBACTERIUM; BACTERIAL SPORE; BACTERIUM; ENVIRONMENT; GENE REGULATORY NETWORK; GENETICS; METABOLISM; PHYSIOLOGY;

EID: 44949168530     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0709764105     Document Type: Article
Times cited : (54)

References (45)
  • 2
    • 0033768897 scopus 로고    scopus 로고
    • Modularity in development and evolution
    • Schlosser G, Thieffry D (2000) Modularity in development and evolution. BioEssays 22:1043-1045.
    • (2000) BioEssays , vol.22 , pp. 1043-1045
    • Schlosser, G.1    Thieffry, D.2
  • 3
    • 0036699526 scopus 로고    scopus 로고
    • Revealing modular organization in the yeast transcriptional network
    • Ihmels J, et al. (2002) Revealing modular organization in the yeast transcriptional network. Nat Genet 31:370-377.
    • (2002) Nat Genet , vol.31 , pp. 370-377
    • Ihmels, J.1
  • 4
    • 0034667684 scopus 로고    scopus 로고
    • Plasticity, evolvability, and modularity in RNA
    • Ancel LW, Fontana W (2000) Plasticity, evolvability, and modularity in RNA. J Exp Zool 288:242-283.
    • (2000) J Exp Zool , vol.288 , pp. 242-283
    • Ancel, L.W.1    Fontana, W.2
  • 6
    • 0030789471 scopus 로고    scopus 로고
    • On the classification and evolution of protein modules
    • Hegyi H, Bork P (1997) On the classification and evolution of protein modules. J Protein Chem 16:545-551.
    • (1997) J Protein Chem , vol.16 , pp. 545-551
    • Hegyi, H.1    Bork, P.2
  • 7
    • 13444292317 scopus 로고    scopus 로고
    • Simple sequence repeats in proteins and their significance for network evolution
    • Hancock JM, Simon M (2005) Simple sequence repeats in proteins and their significance for network evolution. Gene 345:113-118.
    • (2005) Gene , vol.345 , pp. 113-118
    • Hancock, J.M.1    Simon, M.2
  • 8
    • 0037195079 scopus 로고    scopus 로고
    • Modularity, individuality, and evo-devo in butterfly wings
    • Beldade P, Koops K, Brakefield PM (2002) Modularity, individuality, and evo-devo in butterfly wings. Proc Natl Acad Sci USA 99:14262-14267.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 14262-14267
    • Beldade, P.1    Koops, K.2    Brakefield, P.M.3
  • 9
    • 0037197886 scopus 로고    scopus 로고
    • The identification of functional modules from the genomic association of genes
    • Snel B, Bork P, Huynen MA (2002) The identification of functional modules from the genomic association of genes. Proc Natl Acad Sci USA 99:5890-5895.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 5890-5895
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 10
    • 33644644466 scopus 로고    scopus 로고
    • Identification and analysis of evolutionarily cohesive functional modules in protein networks
    • Campillos M, von Mering C, Jensen LJ, Bork P (2006) Identification and analysis of evolutionarily cohesive functional modules in protein networks. Genome Res 16:374-382.
    • (2006) Genome Res , vol.16 , pp. 374-382
    • Campillos, M.1    von Mering, C.2    Jensen, L.J.3    Bork, P.4
  • 11
    • 21844471754 scopus 로고    scopus 로고
    • Systematic association of genes to phenotypes by genome and literature mining
    • Korbel JO, et al. (2005) Systematic association of genes to phenotypes by genome and literature mining. PLoS Biol 3:e134.
    • (2005) PLoS Biol , vol.3
    • Korbel, J.O.1
  • 12
    • 4444250479 scopus 로고    scopus 로고
    • Gene coregulation is highly conserved in the evolution of eukaryotes and prokaryotes
    • Snel B, van Noort V, Huynen MA (2004) Gene coregulation is highly conserved in the evolution of eukaryotes and prokaryotes. Nucleic Acids Res 32:4725-4731.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4725-4731
    • Snel, B.1    van Noort, V.2    Huynen, M.A.3
  • 13
    • 2442631981 scopus 로고    scopus 로고
    • Convergent evolution of gene networks by single-gene duplications in higher eukaryotes
    • Amoutzias GD, Robertson DL, Oliver SG, Bornberg-Bauer E (2004) Convergent evolution of gene networks by single-gene duplications in higher eukaryotes. EMBO Rep 5:274.
    • (2004) EMBO Rep , vol.5 , pp. 274
    • Amoutzias, G.D.1    Robertson, D.L.2    Oliver, S.G.3    Bornberg-Bauer, E.4
  • 14
    • 17844390103 scopus 로고    scopus 로고
    • Novel specificities emerge by stepwise duplication of functional modules
    • Pereira-Leal JB, Teichmann SA (2005) Novel specificities emerge by stepwise duplication of functional modules. Genome Res 15:552-559.
    • (2005) Genome Res , vol.15 , pp. 552-559
    • Pereira-Leal, J.B.1    Teichmann, S.A.2
  • 15
    • 33751429178 scopus 로고    scopus 로고
    • A The evolution of two-component systems in bacteria reveals different strategies for niche adaptation
    • Alm E, Huang K, Arkin (2006) A The evolution of two-component systems in bacteria reveals different strategies for niche adaptation. PLoS Comput Biol 2:e143.
    • (2006) PLoS Comput Biol , vol.2
    • Alm, E.1    Huang, K.2    Arkin3
  • 16
    • 33749173831 scopus 로고    scopus 로고
    • Evolution of alternative transcriptional circuits with identical logic
    • Tsong AE, Tuch BB, Li H, Johnson AD (2006) Evolution of alternative transcriptional circuits with identical logic. Nature 443:415-420.
    • (2006) Nature , vol.443 , pp. 415-420
    • Tsong, A.E.1    Tuch, B.B.2    Li, H.3    Johnson, A.D.4
  • 17
    • 0037199968 scopus 로고    scopus 로고
    • Hierarchical organization of modularity in metabolic networks
    • Ravasz E, Somera AL, Mongru DA, Oltvai ZN, et al. (2002) Hierarchical organization of modularity in metabolic networks. Science 297:1551-1555.
    • (2002) Science , vol.297 , pp. 1551-1555
    • Ravasz, E.1    Somera, A.L.2    Mongru, D.A.3    Oltvai, Z.N.4
  • 18
    • 0036427575 scopus 로고    scopus 로고
    • Evolution of signalling in the sporulation phosphorelay
    • Stephenson K, Hoch JA (2002) Evolution of signalling in the sporulation phosphorelay. Mol Microbiol 46:297-304.
    • (2002) Mol Microbiol , vol.46 , pp. 297-304
    • Stephenson, K.1    Hoch, J.A.2
  • 19
    • 19344376625 scopus 로고    scopus 로고
    • Design and diversity in bacterial chemotaxis: A comparative study in Escherichia coli and Bacillus subtilis
    • Rao CV, Kirby JR, Arkin AP (2004) Design and diversity in bacterial chemotaxis: A comparative study in Escherichia coli and Bacillus subtilis. PLoS Biol 2:E49.
    • (2004) PLoS Biol , vol.2
    • Rao, C.V.1    Kirby, J.R.2    Arkin, A.P.3
  • 20
    • 10044252242 scopus 로고    scopus 로고
    • Making sense of it all: Bacterial chemotaxis
    • Wadhams GH, Armitage JP (2004) Making sense of it all: Bacterial chemotaxis. Nat Rev Mol Cell Biol 5:1024-1037.
    • (2004) Nat Rev Mol Cell Biol , vol.5 , pp. 1024-1037
    • Wadhams, G.H.1    Armitage, J.P.2
  • 22
    • 0032697140 scopus 로고    scopus 로고
    • DNA uptake in bacteria
    • Dubnau D (1999) DNA uptake in bacteria. Annu Rev Microbiol 53:217-244.
    • (1999) Annu Rev Microbiol , vol.53 , pp. 217-244
    • Dubnau, D.1
  • 23
    • 0035430787 scopus 로고    scopus 로고
    • Do bacteria have sex?
    • Redfield RJ (2001) Do bacteria have sex? Nat Rev Genet 2:634-639.
    • (2001) Nat Rev Genet , vol.2 , pp. 634-639
    • Redfield, R.J.1
  • 24
    • 0029565061 scopus 로고
    • Genetic networks controlling the initiation of sporulation and the development of genetic competence in Bacillus subtilis
    • Grossman AD (1995) Genetic networks controlling the initiation of sporulation and the development of genetic competence in Bacillus subtilis. Annu Rev Genet 29:477-508.
    • (1995) Annu Rev Genet , vol.29 , pp. 477-508
    • Grossman, A.D.1
  • 25
    • 0031830304 scopus 로고    scopus 로고
    • D-dependent gene expression in Bacillus subtilis
    • D-dependent gene expression in Bacillus subtilis. J Bacteriol 180:4243-4251.
    • (1998) J Bacteriol , vol.180 , pp. 4243-4251
    • Liu, J.1    Zuber, P.2
  • 26
    • 0033135671 scopus 로고    scopus 로고
    • When the going gets tough: Survival strategies and environmental signaling networks in Bacillus subtilis
    • Msadek T (1999) When the going gets tough: Survival strategies and environmental signaling networks in Bacillus subtilis. Trends Microbiol 7:201-207.
    • (1999) Trends Microbiol , vol.7 , pp. 201-207
    • Msadek, T.1
  • 28
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov RL, Koonin EV, Lipman DJ (1997) A genomic perspective on protein families. Science 278:631.
    • (1997) Science , vol.278 , pp. 631
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 30
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology
    • Ashburner M, et al. (2000) Gene ontology: Tool for the unification of biology. Nat Genet 25:25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 31
    • 0042902833 scopus 로고    scopus 로고
    • The COG database: An updated version includes eukaryotes
    • Tatusov RL, et al. (2003) The COG database: An updated version includes eukaryotes. BMC Bioinformatics 4:41.
    • (2003) BMC Bioinformatics , vol.4 , pp. 41
    • Tatusov, R.L.1
  • 32
    • 33846113652 scopus 로고    scopus 로고
    • TIGRFAMs and Genome Properties: Tools for the assignment of molecular function and biological process in prokaryotic genomes
    • Selengut JD, et al. (2007) TIGRFAMs and Genome Properties: Tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res 35:D260-D264.
    • (2007) Nucleic Acids Res , vol.35
    • Selengut, J.D.1
  • 33
    • 0036798238 scopus 로고    scopus 로고
    • Judging the quality of gene expression-based clustering methods using gene annotation
    • Gibbons FD, Roth FP (2002) Judging the quality of gene expression-based clustering methods using gene annotation. Genome Res 12:1574-1581.
    • (2002) Genome Res , vol.12 , pp. 1574-1581
    • Gibbons, F.D.1    Roth, F.P.2
  • 34
    • 0034095296 scopus 로고    scopus 로고
    • Type III secretion system in Chlamydia species: Identified members and candidates
    • Subtil A, Blocker A, Dautry-Varsat A (2000) Type III secretion system in Chlamydia species: Identified members and candidates. Microbes Infect 2:367-369.
    • (2000) Microbes Infect , vol.2 , pp. 367-369
    • Subtil, A.1    Blocker, A.2    Dautry-Varsat, A.3
  • 35
    • 0029835580 scopus 로고    scopus 로고
    • The archaeal flagellum: A unique motility structure
    • Jarrell KF, Bayley DP, Kostyukova AS (1996) The archaeal flagellum: A unique motility structure. J Bacteriol 178:5057-5064.
    • (1996) J Bacteriol , vol.178 , pp. 5057-5064
    • Jarrell, K.F.1    Bayley, D.P.2    Kostyukova, A.S.3
  • 36
    • 37549018487 scopus 로고    scopus 로고
    • Environmental variability and modularity of bacterial metabolic networks
    • Parter M, Kashtan N, Alon U (2007) Environmental variability and modularity of bacterial metabolic networks. BMC Evol Biol 7:169.
    • (2007) BMC Evol Biol , vol.7 , pp. 169
    • Parter, M.1    Kashtan, N.2    Alon, U.3
  • 37
    • 33745456505 scopus 로고    scopus 로고
    • Slonim N, Elemento O, Tavazoie S (2006) Ab initio genotype-phenotype association reveals intrinsic modularity in genetic networks. Mol Syst Biol 2:2006.0005.
    • Slonim N, Elemento O, Tavazoie S (2006) Ab initio genotype-phenotype association reveals intrinsic modularity in genetic networks. Mol Syst Biol 2:2006.0005.
  • 38
    • 33748757929 scopus 로고    scopus 로고
    • Archaeal flagella, bacterial flagella and type IV pili: A comparison of genes and posttranslational modifications
    • Ng SY, Chaban B, Jarrell KF (2006) Archaeal flagella, bacterial flagella and type IV pili: A comparison of genes and posttranslational modifications. J Mol Microbiol Biotechnol 11:167-191.
    • (2006) J Mol Microbiol Biotechnol , vol.11 , pp. 167-191
    • Ng, S.Y.1    Chaban, B.2    Jarrell, K.F.3
  • 39
    • 34848865681 scopus 로고    scopus 로고
    • Orthologous transcription factors in bacteria have different functions and regulate different genes
    • Price MN, Dehal PS, Arkin AP (2007) Orthologous transcription factors in bacteria have different functions and regulate different genes. PLoS Comput Biol 3:e175.
    • (2007) PLoS Comput Biol , vol.3
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 40
    • 34447096208 scopus 로고    scopus 로고
    • Comparative genomic and protein sequence analyses of a complex system controlling bacterial chemotaxis
    • Wuichet K, Alexander RP, Zhulin IB (2007) Comparative genomic and protein sequence analyses of a complex system controlling bacterial chemotaxis. Methods Enzymol 422:1-31.
    • (2007) Methods Enzymol , vol.422 , pp. 1-31
    • Wuichet, K.1    Alexander, R.P.2    Zhulin, I.B.3
  • 42
    • 0035685198 scopus 로고    scopus 로고
    • DNA as a nutrient: Novel role for bacterial competence gene homologs
    • Finkel SE, Kolter R (2001) DNA as a nutrient: Novel role for bacterial competence gene homologs. J Bacteriol 183:6288-6293.
    • (2001) J Bacteriol , vol.183 , pp. 6288-6293
    • Finkel, S.E.1    Kolter, R.2
  • 44
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z (1997) PAML: A program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13:555-556.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.