-
1
-
-
64249107059
-
Evidence for cardiomyocyte renewal in humans
-
Bergmann, O. et al. Evidence for cardiomyocyte renewal in humans. Science 324, 98-102 (2009).
-
(2009)
Science
, vol.324
, pp. 98-102
-
-
Bergmann, O.1
-
2
-
-
84872611623
-
Mammalian heart renewal by pre-existing cardiomyocytes
-
Senyo, S. E. et al. Mammalian heart renewal by pre-existing cardiomyocytes. Nature 493, 433-436 (2013).
-
(2013)
Nature
, vol.493
, pp. 433-436
-
-
Senyo, S.E.1
-
3
-
-
77649087980
-
Return to the fetal gene program: A suggested metabolic link to gene expression in the heart
-
Taegtmeyer, H., Sen, S. & Vela, D. Return to the fetal gene program: a suggested metabolic link to gene expression in the heart. Ann. NY Acad. Sci. 1188, 191-198 (2010).
-
(2010)
Ann. NY Acad. Sci.
, vol.1188
, pp. 191-198
-
-
Taegtmeyer, H.1
Sen, S.2
Vela, D.3
-
4
-
-
0038069065
-
Developmental changes in contractility and sarcomeric proteins from the early embryonic to the adult stage in the mouse heart
-
Siedner, S. et al. Developmental changes in contractility and sarcomeric proteins from the early embryonic to the adult stage in the mouse heart. J. Physiol. 548, 493-505 (2003).
-
(2003)
J. Physiol.
, vol.548
, pp. 493-505
-
-
Siedner, S.1
-
5
-
-
33746861905
-
+ sensitivity due to titin and troponin-i isoform switching are not critically triggered by birth
-
+ sensitivity due to titin and troponin-i isoform switching are not critically triggered by birth. Am. J. Physiol. Heart Circ. Physiol. 291, H496-H506 (2006).
-
(2006)
Am. J. Physiol. Heart Circ. Physiol.
, vol.291
, pp. H496-H506
-
-
Krüger, M.1
Kohl, T.2
Linke, W.A.3
-
6
-
-
84860340270
-
A cardiac microrna governs systemic energy homeostasis by regulation of med13
-
Grueter, C. E. et al. A cardiac microrna governs systemic energy homeostasis by regulation of med13. Cell 149, 671-683 (2012).
-
(2012)
Cell
, vol.149
, pp. 671-683
-
-
Grueter, C.E.1
-
7
-
-
84881192460
-
Bet bromodomains mediate transcriptional pause release in heart failure
-
Anand, P. et al. Bet bromodomains mediate transcriptional pause release in heart failure. Cell 154, 569-582 (2013).
-
(2013)
Cell
, vol.154
, pp. 569-582
-
-
Anand, P.1
-
8
-
-
84867073340
-
Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage
-
Wamstad, J. A. et al. Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage. Cell 151, 206-220 (2012).
-
(2012)
Cell
, vol.151
, pp. 206-220
-
-
Wamstad, J.A.1
-
9
-
-
0037162697
-
Class II histone deacetylases act as signal-responsive repressors of cardiac hypertrophy
-
Zhang, C. L. et al. Class II histone deacetylases act as signal-responsive repressors of cardiac hypertrophy. Cell 110, 479-488 (2002).
-
(2002)
Cell
, vol.110
, pp. 479-488
-
-
Zhang, C.L.1
-
10
-
-
84885021247
-
Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues
-
Hon, G. C. et al. Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues. Nat. Genet. 45, 1198-1206 (2013).
-
(2013)
Nat. Genet.
, vol.45
, pp. 1198-1206
-
-
Hon, G.C.1
-
11
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
Bird, A. DNA methylation patterns and epigenetic memory. Genes Dev. 16, 6-21 (2002).
-
(2002)
Genes Dev.
, vol.16
, pp. 6-21
-
-
Bird, A.1
-
12
-
-
84863986133
-
Functions of DNA methylation: Islands, start sites, gene bodies and beyond
-
Jones, P. A. Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat. Rev. Genet. 13, 484-492 (2012).
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 484-492
-
-
Jones, P.A.1
-
13
-
-
79956330964
-
Cpg islands and the regulation of transcription
-
Deaton, A. M. & Bird, A. Cpg islands and the regulation of transcription. Genes Dev. 25, 1010-1022 (2011).
-
(2011)
Genes Dev.
, vol.25
, pp. 1010-1022
-
-
Deaton, A.M.1
Bird, A.2
-
14
-
-
84874194072
-
DNA methylation: Roles in mammalian development
-
Smith, Z. D. & Meissner, A. DNA methylation: Roles in mammalian development. Nat. Rev. Genet. 14, 204-220 (2013).
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 204-220
-
-
Smith, Z.D.1
Meissner, A.2
-
15
-
-
0035839126
-
Epigenetic reprogramming in mammalian development
-
Reik, W., Dean, W. & Walter, J. Epigenetic reprogramming in mammalian development. Science 293, 1089-1093 (2001).
-
(2001)
Science
, vol.293
, pp. 1089-1093
-
-
Reik, W.1
Dean, W.2
Walter, J.3
-
16
-
-
83855163995
-
Uncovering the role of 5-hydroxymethylcytosine in the epigenome
-
Branco, M. R., Ficz, G. & Reik, W. Uncovering the role of 5-hydroxymethylcytosine in the epigenome. Nat. Rev. Genet. 13, 7-13 (2012).
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 7-13
-
-
Branco, M.R.1
Ficz, G.2
Reik, W.3
-
17
-
-
84874746425
-
Alterations in cardiac DNA methylation in human dilated cardiomyopathy
-
Haas, J. et al. Alterations in cardiac DNA methylation in human dilated cardiomyopathy. EMBO Mol. Med. 5, 413-429 (2013).
-
(2013)
EMBO Mol. Med.
, vol.5
, pp. 413-429
-
-
Haas, J.1
-
18
-
-
82355180985
-
Distinct epigenomic features in end-stage failing human hearts
-
Movassagh, M. et al. Distinct epigenomic features in end-stage failing human hearts. Circulation 124, 2411-2422 (2011).
-
(2011)
Circulation
, vol.124
, pp. 2411-2422
-
-
Movassagh, M.1
-
19
-
-
33645964973
-
Cardiac regeneration: Repopulating the heart
-
Rubart, M. & Field, L. J. Cardiac regeneration: repopulating the heart. Annu. Rev. Physiol. 68, 29-49 (2006).
-
(2006)
Annu. Rev. Physiol.
, vol.68
, pp. 29-49
-
-
Rubart, M.1
Field, L.J.2
-
20
-
-
78649462103
-
Identification of cardiomyocyte nuclei and assessment of ploidy for the analysis of cell turnover
-
Bergmann, O. et al. Identification of cardiomyocyte nuclei and assessment of ploidy for the analysis of cell turnover. Exp. Cell Res. 317, 188-194 (2011).
-
(2011)
Exp. Cell Res.
, vol.317
, pp. 188-194
-
-
Bergmann, O.1
-
21
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
Stadler, M. B. et al. DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 480, 490-495 (2011).
-
(2011)
Nature
, vol.480
, pp. 490-495
-
-
Stadler, M.B.1
-
22
-
-
84882884517
-
Charting a dynamic DNA methylation landscape of the human genome
-
Ziller, M. J. et al. Charting a dynamic DNA methylation landscape of the human genome. Nature 500, 477-481 (2013).
-
(2013)
Nature
, vol.500
, pp. 477-481
-
-
Ziller, M.J.1
-
23
-
-
84888015137
-
Super-enhancers in the control of cell identity and disease
-
Hnisz, D. et al. Super-enhancers in the control of cell identity and disease. Cell 155, 934-947 (2013).
-
(2013)
Cell
, vol.155
, pp. 934-947
-
-
Hnisz, D.1
-
24
-
-
78650758676
-
Histone h3k27ac separates active from poised enhancers and predicts developmental state
-
Creyghton, M. P. et al. Histone h3k27ac separates active from poised enhancers and predicts developmental state. Proc. Natl Acad. Sci. USA 107, 21931-21936 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
-
25
-
-
84883059229
-
Expression of isl1 during mouse development
-
Zhuang, S. et al. Expression of isl1 during mouse development. Gene Expr. Patterns 13, 407-412 (2013).
-
(2013)
Gene Expr. Patterns
, vol.13
, pp. 407-412
-
-
Zhuang, S.1
-
26
-
-
84877696605
-
Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos
-
Jiang, L. et al. Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos. Cell 153, 773-784 (2013).
-
(2013)
Cell
, vol.153
, pp. 773-784
-
-
Jiang, L.1
-
27
-
-
33748621746
-
Making or breaking the heart: From lineage determination to morphogenesis
-
Srivastava, D. Making or breaking the heart: from lineage determination to morphogenesis. Cell 126, 1037-1048 (2006).
-
(2006)
Cell
, vol.126
, pp. 1037-1048
-
-
Srivastava, D.1
-
28
-
-
84856707310
-
Polycomb repressive complex 2 regulates normal development of the mouse heart
-
He, A. et al. Polycomb repressive complex 2 regulates normal development of the mouse heart. Circ. Res. 110, 406-415 (2012).
-
(2012)
Circ. Res.
, vol.110
, pp. 406-415
-
-
He, A.1
-
29
-
-
84862777974
-
Epigenetic repression of cardiac progenitor gene expression by ezh2 is required for postnatal cardiac homeostasis
-
Delgado-Olguin, P. et al. Epigenetic repression of cardiac progenitor gene expression by ezh2 is required for postnatal cardiac homeostasis. Nat. Genet. 44, 343-347 (2012).
-
(2012)
Nat. Genet.
, vol.44
, pp. 343-347
-
-
Delgado-Olguin, P.1
-
30
-
-
77952371023
-
Cardiomyocyte cell cycle control and growth estimation in vivo-an analysis based on cardiomyocyte nuclei
-
Walsh, S., Ponten, A., Fleischmann, B. K. & Jovinge, S. Cardiomyocyte cell cycle control and growth estimation in vivo-an analysis based on cardiomyocyte nuclei. Cardiovasc. Res. 86, 365-373 (2010).
-
(2010)
Cardiovasc. Res.
, vol.86
, pp. 365-373
-
-
Walsh, S.1
Ponten, A.2
Fleischmann, B.K.3
Jovinge, S.4
-
31
-
-
84867009100
-
Direct visualization of cell division using high-resolution imaging of m-phase of the cell cycle
-
Hesse, M. et al. Direct visualization of cell division using high-resolution imaging of m-phase of the cell cycle. Nat. Commun. 3, 1076 (2012).
-
(2012)
Nat. Commun.
, vol.3
, pp. 1076
-
-
Hesse, M.1
-
32
-
-
84892690160
-
Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions
-
Feldmann, A. et al. Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions. PLoS Genet. 9, e1003994 (2013).
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003994
-
-
Feldmann, A.1
-
33
-
-
84879663784
-
Global epigenomic reconfiguration during mammalian brain development
-
Lister, R. et al. Global epigenomic reconfiguration during mammalian brain development. Science 341, 1237905 (2013).
-
(2013)
Science
, vol.341
, pp. 1237905
-
-
Lister, R.1
-
34
-
-
84891372425
-
Large conserved domains of low DNA methylation maintained by dnmt3a
-
Jeong, M. et al. Large conserved domains of low DNA methylation maintained by dnmt3a. Nat. Genet. 46, 17-23 (2013).
-
(2013)
Nat. Genet.
, vol.46
, pp. 17-23
-
-
Jeong, M.1
-
35
-
-
84878282421
-
Epigenomic analysis of multilineage differentiation of human embryonic stem cells
-
Xie, W. et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell 153, 1134-1148 (2013).
-
(2013)
Cell
, vol.153
, pp. 1134-1148
-
-
Xie, W.1
-
36
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister, R. et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462, 315-322 (2009).
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
-
37
-
-
84857467013
-
Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks
-
Kobayashi, H. et al. Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks. PLoS Genet. 8, e1002440 (2012).
-
(2012)
PLoS Genet.
, vol.8
, pp. e1002440
-
-
Kobayashi, H.1
-
38
-
-
64349091471
-
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
-
Ball, M. P. et al. Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat. Biotechnol. 27, 361-368 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 361-368
-
-
Ball, M.P.1
-
39
-
-
84906302982
-
Short sequences can efficiently recruit histone h3 lysine 27 trimethylation in the absence of enhancer activity and DNA methylation
-
Jermann, P., Hoerner, L., Burger, L. & Schübeler, D. Short sequences can efficiently recruit histone h3 lysine 27 trimethylation in the absence of enhancer activity and DNA methylation. Proc. Natl Acad. Sci. USA 111, E3415-E3421 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. E3415-E3421
-
-
Jermann, P.1
Hoerner, L.2
Burger, L.3
Schübeler, D.4
-
40
-
-
0033615717
-
DNA methyltransferases dnmt3a and dnmt3b are essential for de novo methylation and mammalian development
-
Okano, M., Bell, D. W., Haber, D. A. & Li, E. DNA methyltransferases dnmt3a and dnmt3b are essential for de novo methylation and mammalian development. Cell 99, 247-257 (1999).
-
(1999)
Cell
, vol.99
, pp. 247-257
-
-
Okano, M.1
Bell, D.W.2
Haber, D.A.3
Li, E.4
-
41
-
-
0035166852
-
Absence of pressure overload induced myocardial hypertrophy after conditional inactivation of galphaq/galpha11 in cardiomyocytes
-
Wettschureck, N. et al. Absence of pressure overload induced myocardial hypertrophy after conditional inactivation of galphaq/galpha11 in cardiomyocytes. Nat. Med. 7, 1236-1240 (2001).
-
(2001)
Nat. Med.
, vol.7
, pp. 1236-1240
-
-
Wettschureck, N.1
-
42
-
-
79953224745
-
Ablation of mineralocorticoid receptors in myocytes but not in fibroblasts preserves cardiac function
-
Lother, A. et al. Ablation of mineralocorticoid receptors in myocytes but not in fibroblasts preserves cardiac function. Hypertension 57, 746-754 (2011).
-
(2011)
Hypertension
, vol.57
, pp. 746-754
-
-
Lother, A.1
-
43
-
-
0344824383
-
Visualizing the distribution and transport of mrnas in living cells
-
Bratu, D. P., Cha, B. J., Mhlanga, M. M., Kramer, F. R. & Tyagi, S. Visualizing the distribution and transport of mrnas in living cells. Proc. Natl Acad. Sci. USA 100, 13308-13313 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 13308-13313
-
-
Bratu, D.P.1
Cha, B.J.2
Mhlanga, M.M.3
Kramer, F.R.4
Tyagi, S.5
-
44
-
-
85044697058
-
Isolation and culture of neonatal mouse cardiomyocytes
-
Ehler, E., Moore-Morris, T. & Lange, S. Isolation and culture of neonatal mouse cardiomyocytes. J. Vis. Exp. doi: 10.3791/50134 (2013).
-
(2013)
J. Vis. Exp.
-
-
Ehler, E.1
Moore-Morris, T.2
Lange, S.3
-
45
-
-
33846225093
-
Isolation and culture of adult mouse cardiac myocytes
-
O'Connell, T. D., Rodrigo, M. C. & Simpson, P. C. Isolation and culture of adult mouse cardiac myocytes. Methods Mol. Biol. 357, 271-296 (2007).
-
(2007)
Methods Mol. Biol.
, vol.357
, pp. 271-296
-
-
O'Connell, T.D.1
Rodrigo, M.C.2
Simpson, P.C.3
-
46
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen, Y. et al. A map of the cis-regulatory sequences in the mouse genome. Nature 488, 116-120 (2012).
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
-
47
-
-
75949108066
-
Galaxy: A web-based genome analysis tool for experimentalists
-
Chapter 19: Unit 19 10 11-Unit 19 10 21
-
Blankenberg, D. et al. Galaxy: a web-based genome analysis tool for experimentalists. Curr. Protoc. Mol. Biol. Chapter 19: Unit 19 10 11-Unit 19 10 21 (2010).
-
(2010)
Curr. Protoc. Mol. Biol.
-
-
Blankenberg, D.1
-
48
-
-
25844449770
-
Galaxy: A platform for interactive large-scale genome analysis
-
Giardine, B. et al. Galaxy: a platform for interactive large-scale genome analysis. Genome Res. 15, 1451-1455 (2005).
-
(2005)
Genome Res.
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
-
49
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks, J., Nekrutenko, A., Taylor, J. & Galaxy, T. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11, R86 (2010).
-
(2010)
Genome Biol.
, vol.11
, pp. R86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
Galaxy, T.4
-
50
-
-
79957868920
-
Bismark: A flexible aligner and methylation caller for bisulfite-seq applications
-
Krueger, F. & Andrews, S. R. Bismark: a flexible aligner and methylation caller for bisulfite-seq applications. Bioinformatics 27, 1571-1572 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 1571-1572
-
-
Krueger, F.1
Andrews, S.R.2
-
51
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
52
-
-
68549104404
-
The sequence alignment/map format and samtools
-
Li, H. et al. The sequence alignment/map format and samtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
53
-
-
77951770756
-
Bedtools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A. R. & Hall, I. M. Bedtools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
54
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J. T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
-
55
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman, R. C. et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80 (2004).
-
(2004)
Genome Biol.
, vol.5
, pp. R80
-
-
Gentleman, R.C.1
-
56
-
-
84900988020
-
Deeptools: A flexible platform for exploring deep-sequencing data
-
Ramirez, F., Dundar, F., Diehl, S., Gruning, B. A. & Manke, T. Deeptools: a flexible platform for exploring deep-sequencing data. Nucleic Acids Res. 42, W187-W191 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. W187-W191
-
-
Ramirez, F.1
Dundar, F.2
Diehl, S.3
Gruning, B.A.4
Manke, T.5
-
57
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and b cell identities
-
Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and b cell identities. Mol. Cell 38, 576-589 (2010).
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
-
58
-
-
34548561572
-
Pyrosequencing protocol using a universal biotinylated primer for mutation detection and snp genotyping
-
Royo, J. L., Hidalgo, M. & Ruiz, A. Pyrosequencing protocol using a universal biotinylated primer for mutation detection and snp genotyping. Nat. Protoc. 2, 1734-1739 (2007).
-
(2007)
Nat. Protoc.
, vol.2
, pp. 1734-1739
-
-
Royo, J.L.1
Hidalgo, M.2
Ruiz, A.3
-
59
-
-
38449113853
-
DNA methylation analysis by pyrosequencing
-
Tost, J. & Gut, I. G. DNA methylation analysis by pyrosequencing. Nat. Protoc. 2, 2265-2275 (2007).
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2265-2275
-
-
Tost, J.1
Gut, I.G.2
-
60
-
-
77952214662
-
Great improves functional interpretation of cis-regulatory regions
-
McLean, C. Y. et al. Great improves functional interpretation of cis-regulatory regions. Nat. Biotechnol. 28, 495-501 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
-
61
-
-
64549104807
-
Cluego: A cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
-
Bindea, G. et al. Cluego: a cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinformatics 25, 1091-1093 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1091-1093
-
-
Bindea, G.1
-
62
-
-
77956627119
-
Redefining cpg islands using hidden markov models
-
Wu, H., Caffo, B., Jaffee, H. A., Irizarry, R. A. & Feinberg, A. P. Redefining cpg islands using hidden markov models. Biostatistics 11, 499-514 (2010).
-
(2010)
Biostatistics
, vol.11
, pp. 499-514
-
-
Wu, H.1
Caffo, B.2
Jaffee, H.A.3
Irizarry, R.A.4
Feinberg, A.P.5
-
63
-
-
84891771466
-
The ucsc genome browser database: 2014 update
-
Karolchik, D. et al. The ucsc genome browser database: 2014 update. Nucleic Acids Res. 42, D764-D770 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D764-D770
-
-
Karolchik, D.1
-
64
-
-
84876996918
-
Tophat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D. et al. Tophat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013).
-
(2013)
Genome Biol.
, vol.14
, pp. R36
-
-
Kim, D.1
-
65
-
-
77952123055
-
Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C. et al. Transcript assembly and quantification by rna-seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
66
-
-
77952333999
-
Sympathetic alpha(2)-adrenoceptors prevent cardiac hypertrophy and fibrosis in mice at baseline but not after chronic pressure overload
-
Gilsbach, R. et al. Sympathetic alpha(2)-adrenoceptors prevent cardiac hypertrophy and fibrosis in mice at baseline but not after chronic pressure overload. Cardiovasc. Res. 86, 432-442 (2010).
-
(2010)
Cardiovasc. Res.
, vol.86
, pp. 432-442
-
-
Gilsbach, R.1
-
67
-
-
84872112391
-
Cell type-specific chromatin immunoprecipitation from multicellular complex samples using bits-chip
-
Bonn, S. et al. Cell type-specific chromatin immunoprecipitation from multicellular complex samples using bits-chip. Nat. Protoc. 7, 978-994 (2012).
-
(2012)
Nat. Protoc.
, vol.7
, pp. 978-994
-
-
Bonn, S.1
-
68
-
-
84859210032
-
Fast gapped-read alignment with bowtie 2
-
Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with bowtie 2. Nat. Methods 9, 357-359 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
69
-
-
53849146020
-
Model-based analysis of chip-seq (macs)
-
Zhang, Y. et al. Model-based analysis of chip-seq (macs). Genome Biol. 9, R137 (2008).
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
|