-
1
-
-
34248160438
-
Developmentally regulated piRNA clusters implicate MILI in transposon control
-
A.A. Aravin, R. Sachidanandam, A. Girard, K. Fejes-Toth, and G.J. Hannon Developmentally regulated piRNA clusters implicate MILI in transposon control Science 316 2007 744 747
-
(2007)
Science
, vol.316
, pp. 744-747
-
-
Aravin, A.A.1
Sachidanandam, R.2
Girard, A.3
Fejes-Toth, K.4
Hannon, G.J.5
-
2
-
-
52049098967
-
A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice
-
A.A. Aravin, R. Sachidanandam, D. Bourc'his, C. Schaefer, D. Pezic, K.F. Toth, T. Bestor, and G.J. Hannon A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice Mol. Cell 31 2008 785 799
-
(2008)
Mol. Cell
, vol.31
, pp. 785-799
-
-
Aravin, A.A.1
Sachidanandam, R.2
Bourc'His, D.3
Schaefer, C.4
Pezic, D.5
Toth, K.F.6
Bestor, T.7
Hannon, G.J.8
-
3
-
-
77955482238
-
Paramutation in maize: RNA mediated trans-generational gene silencing
-
M.A. Arteaga-Vazquez, and V.L. Chandler Paramutation in maize: RNA mediated trans-generational gene silencing Curr. Opin. Genet. Dev. 20 2010 156 163
-
(2010)
Curr. Opin. Genet. Dev.
, vol.20
, pp. 156-163
-
-
Arteaga-Vazquez, M.A.1
Chandler, V.L.2
-
4
-
-
64349091471
-
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
-
M.P. Ball, J.B. Li, Y. Gao, J.H. Lee, E.M. LeProust, I.H. Park, B. Xie, G.Q. Daley, and G.M. Church Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells Nat. Biotechnol. 27 2009 361 368
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 361-368
-
-
Ball, M.P.1
Li, J.B.2
Gao, Y.3
Lee, J.H.4
Leproust, E.M.5
Park, I.H.6
Xie, B.7
Daley, G.Q.8
Church, G.M.9
-
5
-
-
33646481643
-
Dynamic reprogramming of DNA methylation at an epigenetically sensitive allele in mice
-
M.E. Blewitt, N.K. Vickaryous, A. Paldi, H. Koseki, and E. Whitelaw Dynamic reprogramming of DNA methylation at an epigenetically sensitive allele in mice PLoS Genet. 2 2006 e49
-
(2006)
PLoS Genet.
, vol.2
, pp. 49
-
-
Blewitt, M.E.1
Vickaryous, N.K.2
Paldi, A.3
Koseki, H.4
Whitelaw, E.5
-
6
-
-
84867053720
-
Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA
-
J.P. Calarco, F. Borges, M.T. Donoghue, F. Van Ex, P.E. Jullien, T. Lopes, R. Gardner, F. Berger, J.A. Feijó, J.D. Becker, and R.A. Martienssen Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA Cell 151 2012 194 205
-
(2012)
Cell
, vol.151
, pp. 194-205
-
-
Calarco, J.P.1
Borges, F.2
Donoghue, M.T.3
Van Ex, F.4
Jullien, P.E.5
Lopes, T.6
Gardner, R.7
Berger, F.8
Feijó, J.A.9
Becker, J.D.10
Martienssen, R.A.11
-
7
-
-
0032524877
-
The Drosophila Fab-7 chromosomal element conveys epigenetic inheritance during mitosis and meiosis
-
G. Cavalli, and R. Paro The Drosophila Fab-7 chromosomal element conveys epigenetic inheritance during mitosis and meiosis Cell 93 1998 505 518
-
(1998)
Cell
, vol.93
, pp. 505-518
-
-
Cavalli, G.1
Paro, R.2
-
8
-
-
78650061153
-
Transgenerational epigenetic inheritance: More questions than answers
-
L. Daxinger, and E. Whitelaw Transgenerational epigenetic inheritance: more questions than answers Genome Res. 20 2010 1623 1628
-
(2010)
Genome Res.
, vol.20
, pp. 1623-1628
-
-
Daxinger, L.1
Whitelaw, E.2
-
9
-
-
84857189974
-
Understanding transgenerational epigenetic inheritance via the gametes in mammals
-
L. Daxinger, and E. Whitelaw Understanding transgenerational epigenetic inheritance via the gametes in mammals Nat. Rev. Genet. 13 2012 153 162
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 153-162
-
-
Daxinger, L.1
Whitelaw, E.2
-
11
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals
-
S. Feng, S.J. Cokus, X. Zhang, P.Y. Chen, M. Bostick, M.G. Goll, J. Hetzel, J. Jain, S.H. Strauss, and M.E. Halpern Conservation and divergence of methylation patterning in plants and animals Proc. Natl. Acad. Sci. USA 107 2010 8689 8694
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 8689-8694
-
-
Feng, S.1
Cokus, S.J.2
Zhang, X.3
Chen, P.Y.4
Bostick, M.5
Goll, M.G.6
Hetzel, J.7
Jain, J.8
Strauss, S.H.9
Halpern, M.E.10
-
12
-
-
78049414227
-
Epigenetic reprogramming in plant and animal development
-
S. Feng, S.E. Jacobsen, and W. Reik Epigenetic reprogramming in plant and animal development Science 330 2010 622 627
-
(2010)
Science
, vol.330
, pp. 622-627
-
-
Feng, S.1
Jacobsen, S.E.2
Reik, W.3
-
13
-
-
80053348585
-
The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
-
T.P. Gu, F. Guo, H. Yang, H.P. Wu, G.F. Xu, W. Liu, Z.G. Xie, L. Shi, X. He, and S.G. Jin The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes Nature 477 2011 606 610
-
(2011)
Nature
, vol.477
, pp. 606-610
-
-
Gu, T.P.1
Guo, F.2
Yang, H.3
Wu, H.P.4
Xu, G.F.5
Liu, W.6
Xie, Z.G.7
Shi, L.8
He, X.9
Jin, S.G.10
-
14
-
-
77957932941
-
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
-
R.A. Harris, T. Wang, C. Coarfa, R.P. Nagarajan, C. Hong, S.L. Downey, B.E. Johnson, S.D. Fouse, A. Delaney, and Y. Zhao Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications Nat. Biotechnol. 28 2010 1097 1105
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1097-1105
-
-
Harris, R.A.1
Wang, T.2
Coarfa, C.3
Nagarajan, R.P.4
Hong, C.5
Downey, S.L.6
Johnson, B.E.7
Fouse, S.D.8
Delaney, A.9
Zhao, Y.10
-
15
-
-
34249330696
-
Epigenetic inheritance in plants
-
I.R. Henderson, and S.E. Jacobsen Epigenetic inheritance in plants Nature 447 2007 418 424
-
(2007)
Nature
, vol.447
, pp. 418-424
-
-
Henderson, I.R.1
Jacobsen, S.E.2
-
16
-
-
34047154356
-
A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish
-
S. Houwing, L.M. Kamminga, E. Berezikov, D. Cronembold, A. Girard, H. van den Elst, D.V. Filippov, H. Blaser, E. Raz, and C.B. Moens A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish Cell 129 2007 69 82
-
(2007)
Cell
, vol.129
, pp. 69-82
-
-
Houwing, S.1
Kamminga, L.M.2
Berezikov, E.3
Cronembold, D.4
Girard, A.5
Van Den Elst, H.6
Filippov, D.V.7
Blaser, H.8
Raz, E.9
Moens, C.B.10
-
18
-
-
80054097425
-
Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos
-
A. Inoue, and Y. Zhang Replication-dependent loss of 5- hydroxymethylcytosine in mouse preimplantation embryos Science 334 2011 194
-
(2011)
Science
, vol.334
, pp. 194
-
-
Inoue, A.1
Zhang, Y.2
-
19
-
-
79952763586
-
Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine
-
K. Iqbal, S.G. Jin, G.P. Pfeifer, and P.E. Szabó Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine Proc. Natl. Acad. Sci. USA 108 2011 3642 3647
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 3642-3647
-
-
Iqbal, K.1
Jin, S.G.2
Pfeifer, G.P.3
Szabó, P.E.4
-
20
-
-
0037372003
-
Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
-
R. Jaenisch, and A. Bird Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals Nat. Genet. 33 Suppl 2003 245 254
-
(2003)
Nat. Genet.
, vol.33
, Issue.SUPPL.
, pp. 245-254
-
-
Jaenisch, R.1
Bird, A.2
-
21
-
-
77955449906
-
Epigenetic memory in induced pluripotent stem cells
-
K. Kim, A. Doi, B. Wen, K. Ng, R. Zhao, P. Cahan, J. Kim, M.J. Aryee, H. Ji, and L.I. Ehrlich Epigenetic memory in induced pluripotent stem cells Nature 467 2010 285 290
-
(2010)
Nature
, vol.467
, pp. 285-290
-
-
Kim, K.1
Doi, A.2
Wen, B.3
Ng, K.4
Zhao, R.5
Cahan, P.6
Kim, J.7
Aryee, M.J.8
Ji, H.9
Ehrlich, L.I.10
-
22
-
-
0029045033
-
Stages of embryonic development of the zebrafish
-
C.B. Kimmel, W.W. Ballard, S.R. Kimmel, B. Ullmann, and T.F. Schilling Stages of embryonic development of the zebrafish Dev. Dyn. 203 1995 253 310
-
(1995)
Dev. Dyn.
, vol.203
, pp. 253-310
-
-
Kimmel, C.B.1
Ballard, W.W.2
Kimmel, S.R.3
Ullmann, B.4
Schilling, T.F.5
-
23
-
-
70349303699
-
Before maternal-zygotic transition. There was morphogenetic function of nuclei
-
V. Korzh Before maternal-zygotic transition. There was morphogenetic function of nuclei Zebrafish 6 2009 295 302
-
(2009)
Zebrafish
, vol.6
, pp. 295-302
-
-
Korzh, V.1
-
24
-
-
79957868920
-
Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
-
F. Krueger, and S.R. Andrews Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications Bioinformatics 27 2011 1571 1572
-
(2011)
Bioinformatics
, vol.27
, pp. 1571-1572
-
-
Krueger, F.1
Andrews, S.R.2
-
25
-
-
0026708177
-
Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
-
E. Li, T.H. Bestor, and R. Jaenisch Targeted mutation of the DNA methyltransferase gene results in embryonic lethality Cell 69 1992 915 926
-
(1992)
Cell
, vol.69
, pp. 915-926
-
-
Li, E.1
Bestor, T.H.2
Jaenisch, R.3
-
26
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
R. Lister, M. Pelizzola, R.H. Dowen, R.D. Hawkins, G. Hon, J. Tonti-Filippini, J.R. Nery, L. Lee, Z. Ye, and Q.M. Ngo Human DNA methylomes at base resolution show widespread epigenomic differences Nature 462 2009 315 322
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
Tonti-Filippini, J.6
Nery, J.R.7
Lee, L.8
Ye, Z.9
Ngo, Q.M.10
-
27
-
-
35648972684
-
Immunological detection of changes in genomic DNA methylation during early zebrafish development
-
A.B. MacKay, A.A. Mhanni, R.A. McGowan, and P.H. Krone Immunological detection of changes in genomic DNA methylation during early zebrafish development Genome 50 2007 778 785
-
(2007)
Genome
, vol.50
, pp. 778-785
-
-
Mackay, A.B.1
Mhanni, A.A.2
McGowan, R.A.3
Krone, P.H.4
-
28
-
-
0032833751
-
Absence of genome-wide changes in DNA methylation during development of the zebrafish
-
D. Macleod, V.H. Clark, and A. Bird Absence of genome-wide changes in DNA methylation during development of the zebrafish Nat. Genet. 23 1999 139 140
-
(1999)
Nat. Genet.
, vol.23
, pp. 139-140
-
-
Macleod, D.1
Clark, V.H.2
Bird, A.3
-
29
-
-
4544291383
-
Global changes in genomic methylation levels during early development of the zebrafish embryo
-
A.A. Mhanni, and R.A. McGowan Global changes in genomic methylation levels during early development of the zebrafish embryo Dev. Genes Evol. 214 2004 412 417
-
(2004)
Dev. Genes Evol.
, vol.214
, pp. 412-417
-
-
Mhanni, A.A.1
McGowan, R.A.2
-
30
-
-
80052937538
-
Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates
-
A. Molaro, E. Hodges, F. Fang, Q. Song, W.R. McCombie, G.J. Hannon, and A.D. Smith Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates Cell 146 2011 1029 1041
-
(2011)
Cell
, vol.146
, pp. 1029-1041
-
-
Molaro, A.1
Hodges, E.2
Fang, F.3
Song, Q.4
McCombie, W.R.5
Hannon, G.J.6
Smith, A.D.7
-
32
-
-
0025789781
-
Developmental potential and chromosome constitution of strontium-induced mouse parthenogenones
-
G.T. O'Neill, L.R. Rolfe, and M.H. Kaufman Developmental potential and chromosome constitution of strontium-induced mouse parthenogenones Mol. Reprod. Dev. 30 1991 214 219
-
(1991)
Mol. Reprod. Dev.
, vol.30
, pp. 214-219
-
-
O'Neill, G.T.1
Rolfe, L.R.2
Kaufman, M.H.3
-
33
-
-
0033615717
-
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
-
M. Okano, D.W. Bell, D.A. Haber, and E. Li DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development Cell 99 1999 247 257
-
(1999)
Cell
, vol.99
, pp. 247-257
-
-
Okano, M.1
Bell, D.W.2
Haber, D.A.3
Li, E.4
-
34
-
-
0031887992
-
Zebrafish hox genes: Genomic organization and modified colinear expression patterns in the trunk
-
V.E. Prince, L. Joly, M. Ekker, and R.K. Ho Zebrafish hox genes: genomic organization and modified colinear expression patterns in the trunk Development 125 1998 407 420
-
(1998)
Development
, vol.125
, pp. 407-420
-
-
Prince, V.E.1
Joly, L.2
Ekker, M.3
Ho, R.K.4
-
35
-
-
33749179804
-
Zebra fish Dnmt1 and Suv39h1 regulate organ-specific terminal differentiation during development
-
K. Rai, L.D. Nadauld, S. Chidester, E.J. Manos, S.R. James, A.R. Karpf, B.R. Cairns, and D.A. Jones Zebra fish Dnmt1 and Suv39h1 regulate organ-specific terminal differentiation during development Mol. Cell. Biol. 26 2006 7077 7085
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 7077-7085
-
-
Rai, K.1
Nadauld, L.D.2
Chidester, S.3
Manos, E.J.4
James, S.R.5
Karpf, A.R.6
Cairns, B.R.7
Jones, D.A.8
-
36
-
-
57649196594
-
DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45
-
K. Rai, I.J. Huggins, S.R. James, A.R. Karpf, D.A. Jones, and B.R. Cairns DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45 Cell 135 2008 1201 1212
-
(2008)
Cell
, vol.135
, pp. 1201-1212
-
-
Rai, K.1
Huggins, I.J.2
James, S.R.3
Karpf, A.R.4
Jones, D.A.5
Cairns, B.R.6
-
37
-
-
84861752670
-
Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads
-
A.B. Robertson, J.A. Dahl, R. Ougland, and A. Klungland Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads Nat. Protoc. 7 2012 340 350
-
(2012)
Nat. Protoc.
, vol.7
, pp. 340-350
-
-
Robertson, A.B.1
Dahl, J.A.2
Ougland, R.3
Klungland, A.4
-
38
-
-
84655164284
-
De novo DNA methylation: A germ cell perspective
-
S.A. Smallwood, and G. Kelsey De novo DNA methylation: a germ cell perspective Trends Genet. 28 2012 33 42
-
(2012)
Trends Genet.
, vol.28
, pp. 33-42
-
-
Smallwood, S.A.1
Kelsey, G.2
-
39
-
-
84859910536
-
A unique regulatory phase of DNA methylation in the early mammalian embryo
-
Z.D. Smith, M.M. Chan, T.S. Mikkelsen, H. Gu, A. Gnirke, A. Regev, and A. Meissner A unique regulatory phase of DNA methylation in the early mammalian embryo Nature 484 2012 339 344
-
(2012)
Nature
, vol.484
, pp. 339-344
-
-
Smith, Z.D.1
Chan, M.M.2
Mikkelsen, T.S.3
Gu, H.4
Gnirke, A.5
Regev, A.6
Meissner, A.7
-
40
-
-
0035980220
-
Constitutive genomic methylation during embryonic development of Xenopus
-
G.J. Veenstra, and A.P. Wolffe Constitutive genomic methylation during embryonic development of Xenopus Biochim. Biophys. Acta 1521 2001 39 44
-
(2001)
Biochim. Biophys. Acta
, vol.1521
, pp. 39-44
-
-
Veenstra, G.J.1
Wolffe, A.P.2
-
41
-
-
80055115753
-
Making gynogenetic diploid zebrafish by early pressure
-
C. Walker, G.S. Walsh, and C. Moens Making gynogenetic diploid zebrafish by early pressure J. Vis. Exp. 28 2009 e1396
-
(2009)
J. Vis. Exp.
, vol.28
, pp. 1396
-
-
Walker, C.1
Walsh, G.S.2
Moens, C.3
-
42
-
-
77956095231
-
Active DNA demethylation: Many roads lead to Rome
-
S.C. Wu, and Y. Zhang Active DNA demethylation: many roads lead to Rome Nat. Rev. Mol. Cell Biol. 11 2010 607 620
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 607-620
-
-
Wu, S.C.1
Zhang, Y.2
-
43
-
-
0026594804
-
Temporal regulation in the early embryo: Is MBT too good to be true?
-
G.K. Yasuda, and G. Schubiger Temporal regulation in the early embryo: is MBT too good to be true? Trends Genet. 8 1992 124 127
-
(1992)
Trends Genet.
, vol.8
, pp. 124-127
-
-
Yasuda, G.K.1
Schubiger, G.2
-
44
-
-
84861990517
-
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome
-
M. Yu, G.C. Hon, K.E. Szulwach, C.X. Song, L. Zhang, A. Kim, X. Li, Q. Dai, Y. Shen, and B. Park Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome Cell 149 2012 1368 1380
-
(2012)
Cell
, vol.149
, pp. 1368-1380
-
-
Yu, M.1
Hon, G.C.2
Szulwach, K.E.3
Song, C.X.4
Zhang, L.5
Kim, A.6
Li, X.7
Dai, Q.8
Shen, Y.9
Park, B.10
-
45
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
A. Zemach, I.E. McDaniel, P. Silva, and D. Zilberman Genome-wide evolutionary analysis of eukaryotic DNA methylation Science 328 2010 916 919
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
46
-
-
80051555960
-
Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition
-
H. Aanes, C.L. Winata, C.H. Lin, J.P. Chen, K.G. Srinivasan, S.G. Lee, A.Y. Lim, H.S. Hajan, P. Collas, and G. Bourque Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition Genome Res. 21 2011 1328 1338
-
(2011)
Genome Res.
, vol.21
, pp. 1328-1338
-
-
Aanes, H.1
Winata, C.L.2
Lin, C.H.3
Chen, J.P.4
Srinivasan, K.G.5
Lee, S.G.6
Lim, A.Y.7
Hajan, H.S.8
Collas, P.9
Bourque, G.10
-
47
-
-
0025066941
-
More powerful procedures for multiple significance testing
-
Y. Hochberg, and Y. Benjamini More powerful procedures for multiple significance testing Stat. Med. 9 1990 811 818
-
(1990)
Stat. Med.
, vol.9
, pp. 811-818
-
-
Hochberg, Y.1
Benjamini, Y.2
-
48
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
M.D. Robinson, and A. Oshlack A scaling normalization method for differential expression analysis of RNA-seq data Genome Biol. 11 2010 R25
-
(2010)
Genome Biol.
, vol.11
, pp. 25
-
-
Robinson, M.D.1
Oshlack, A.2
|