-
1
-
-
0037143748
-
The gene expression fingerprint of human heart failure
-
DOI 10.1073/pnas.162370099
-
Tan FL, Moravec CS, Li J, Apperson-Hansen C, McCarthy PM, Young JB, Bond M. The gene expression fingerprint of human heart failure. Proc Natl Acad Sci USA. 2002;99:11387-11392. (Pubitemid 34920935)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.17
, pp. 11387-11392
-
-
Tan, F.-L.1
Moravec, C.S.2
Li, J.3
Apperson-Hansen, C.4
McCarthy, P.M.5
Young, J.B.6
Bond, M.7
-
2
-
-
39749168495
-
Tackling heart failure in the twenty-first century
-
DOI 10.1038/nature06798, PII NATURE06798
-
Mudd JO, Kass DA. Tackling heart failure in the twenty-first century. Nature. 2008;451:919-928. (Pubitemid 351301747)
-
(2008)
Nature
, vol.451
, Issue.7181
, pp. 919-928
-
-
Mudd, J.O.1
Kass, D.A.2
-
3
-
-
49149127971
-
Put your chips on transcriptomics
-
Dorn GW 2nd, Matkovich SJ. Put your chips on transcriptomics. Circulation. 2008;118:216-218.
-
(2008)
Circulation
, vol.118
, pp. 216-218
-
-
Dorn, I.I.G.W.1
Matkovich, S.J.2
-
5
-
-
49149084567
-
Transcriptomic biomarkers for individual risk assessment in new-onset heart failure
-
Heidecker B, Kasper EK, Wittstein IS, Champion HC, Breton E, Russell SD, Kittleson MM, Baughman KL, Hare JM. Transcriptomic biomarkers for individual risk assessment in new-onset heart failure. Circulation. 2008;118:238-246.
-
(2008)
Circulation
, vol.118
, pp. 238-246
-
-
Heidecker, B.1
Kasper, E.K.2
Wittstein, I.S.3
Champion, H.C.4
Breton, E.5
Russell, S.D.6
Kittleson, M.M.7
Baughman, K.L.8
Hare, J.M.9
-
6
-
-
33748323383
-
Regulation of cardiac hypertrophy by intracellular signalling pathways
-
DOI 10.1038/nrm1983, PII NRM1983
-
Heineke J, Molkentin JD. Regulation of cardiac hypertrophy by intracellular signalling pathways. Nat Rev Mol Cell Biol. 2006;7:589-600. (Pubitemid 44325350)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.8
, pp. 589-600
-
-
Heineke, J.1
Molkentin, J.D.2
-
8
-
-
0037372003
-
Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
-
DOI 10.1038/ng1089
-
Jaenisch R, Bird A. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat Genet. 2003; 33(suppl):245-254. (Pubitemid 36278835)
-
(2003)
Nature Genetics
, vol.33
, Issue.SUPPL.
, pp. 245-254
-
-
Jaenisch, R.1
Bird, A.2
-
9
-
-
23044514669
-
Epigenetic differences arise during the lifetime of monozygotic twins
-
DOI 10.1073/pnas.0500398102
-
Fraga MF, Ballestar E, Paz MF, Ropero S, Setien F, Ballestar ML, Heine-Suner D, Cigudosa JC, Urioste M, Benitez J, Boix-Chornet M, Sanchez-Aguilera A, Ling C, Carlsson E, Poulsen P, Vaag A, Stephan Z, Spector TD, Wu YZ, Plass C, Esteller M. Epigenetic differences arise during the lifetime of monozygotic twins. Proc Natl Acad Sci USA. 2005;102:10604-10609. (Pubitemid 41061601)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.30
, pp. 10604-10609
-
-
Fraga, M.F.1
Ballestar, E.2
Paz, M.F.3
Ropero, S.4
Setien, F.5
Ballestar, M.L.6
Heine-Suner, D.7
Cigudosa, J.C.8
Urioste, M.9
Benitez, J.10
Boix-Chornet, M.11
Sanchez-Aguilera, A.12
Ling, C.13
Carlsson, E.14
Poulsen, P.15
Vaag, A.16
Stephan, Z.17
Spector, T.D.18
Wu, Y.-Z.19
Plass, C.20
Esteller, M.21
more..
-
10
-
-
77950657253
-
Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains
-
Rakyan VK, Down TA, Maslau S, Andrew T, Yang TP, Beyan H, Whittaker P, McCann OT, Finer S, Valdes AM, Leslie RD, Deloukas P, Spector TD. Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains. Genome Res. 2011;20: 434-439.
-
(2011)
Genome Res
, vol.20
, pp. 434-439
-
-
Rakyan, V.K.1
Down, T.A.2
Maslau, S.3
Andrew, T.4
Yang, T.P.5
Beyan, H.6
Whittaker, P.7
McCann, O.T.8
Finer, S.9
Valdes, A.M.10
Leslie, R.D.11
Deloukas, P.12
Spector, T.D.13
-
11
-
-
77953628087
-
Active DNA demethylation in human postmitotic cells correlates with activating histone modifications, but not transcription levels
-
Klug M, Heinz S, Gebhard C, Schwarzfischer L, Krause SW, Andreesen R, Rehli M. Active DNA demethylation in human postmitotic cells correlates with activating histone modifications, but not transcription levels. Genome Biol. 2010;11:R63.
-
(2010)
Genome Biol
, vol.11
-
-
Klug, M.1
Heinz, S.2
Gebhard, C.3
Schwarzfischer, L.4
Krause, S.W.5
Andreesen, R.6
Rehli, M.7
-
12
-
-
40449123137
-
Cyclical DNA methylation of a transcriptionally active promoter
-
DOI 10.1038/nature06544, PII NATURE06544
-
Metivier R, Gallais R, Tiffoche C, Le Peron C, Jurkowska RZ, Carmouche RP, Ibberson D, Barath P, Demay F, Reid G, Benes V, Jeltsch A, Gannon F, Salbert G. Cyclical DNA methylation of a transcriptionally active promoter. Nature. 2008;452:45-50. (Pubitemid 351355084)
-
(2008)
Nature
, vol.452
, Issue.7183
, pp. 45-50
-
-
Metivier, R.1
Gallais, R.2
Tiffoche, C.3
Le Peron, C.4
Jurkowska, R.Z.5
Carmouche, R.P.6
Ibberson, D.7
Barath, P.8
Demay, F.9
Reid, G.10
Benes, V.11
Jeltsch, A.12
Gannon, F.13
Salbert, G.14
-
13
-
-
70350044885
-
DNA demethylation in hormone-induced transcriptional derepression
-
Kim MS, Kondo T, Takada I, Youn MY, Yamamoto Y, Takahashi S, Matsumoto T, Fujiyama S, Shirode Y, Yamaoka I, Kitagawa H, Takeyama K, Shibuya H, Ohtake F, Kato S. DNA demethylation in hormone-induced transcriptional derepression. Nature. 2009;461: 1007-1012.
-
(2009)
Nature
, vol.461
, pp. 1007-1012
-
-
Kim, M.S.1
Kondo, T.2
Takada, I.3
Youn, M.Y.4
Yamamoto, Y.5
Takahashi, S.6
Matsumoto, T.7
Fujiyama, S.8
Shirode, Y.9
Yamaoka, I.10
Kitagawa, H.11
Takeyama, K.12
Shibuya, H.13
Ohtake, F.14
Kato, S.15
-
14
-
-
40849139208
-
Epigenetics in cancer
-
Esteller M. Epigenetics in cancer. N Engl J Med. 2008;358:1148-1159.
-
(2008)
N Engl J Med
, vol.358
, pp. 1148-1159
-
-
Esteller, M.1
-
15
-
-
41149140859
-
Epigenomic Profiling Reveals DNA-Methylation Changes Associated with Major Psychosis
-
DOI 10.1016/j.ajhg.2008.01.008, PII S0002929708001481
-
Mill J, Tang T, Kaminsky Z, Khare T, Yazdanpanah S, Bouchard L, Jia P, Assadzadeh A, Flanagan J, Schumacher A, Wang SC, Petronis A. Epigenomic profiling reveals DNA-methylation changes associated with major psychosis. Am J Hum Genet. 2008;82:696-711. (Pubitemid 351726115)
-
(2008)
American Journal of Human Genetics
, vol.82
, Issue.3
, pp. 696-711
-
-
Mill, J.1
Tang, T.2
Kaminsky, Z.3
Khare, T.4
Yazdanpanah, S.5
Bouchard, L.6
Jia, P.7
Assadzadeh, A.8
Flanagan, J.9
Schumacher, A.10
Wang, S.-C.11
Petronis, A.12
-
16
-
-
69149087790
-
Non-CpG methylation of the PGC-1alpha promoter through DNMT3B controls mitochondrial density
-
Barres R, Osler ME, Yan J, Rune A, Fritz T, Caidahl K, Krook A, Zierath JR. Non-CpG methylation of the PGC-1alpha promoter through DNMT3B controls mitochondrial density. Cell Metab. 2009;10:189-198.
-
(2009)
Cell Metab
, vol.10
, pp. 189-198
-
-
Barres, R.1
Osler, M.E.2
Yan, J.3
Rune, A.4
Fritz, T.5
Caidahl, K.6
Krook, A.7
Zierath, J.R.8
-
17
-
-
0032831285
-
Methylation of the estrogen receptor gene is associated with aging and atherosclerosis in the cardiovascular system
-
DOI 10.1016/S0008-6363(99)00153-4, PII S0008636399001534
-
Post WS, Goldschmidt-Clermont PJ, Wilhide CC, Heldman AW, Sussman MS, Ouyang P, Milliken EE, Issa JP. Methylation of the estrogen receptor gene is associated with aging and atherosclerosis in the cardiovascular system. Cardiovasc Res. 1999;43:985-991. (Pubitemid 29413198)
-
(1999)
Cardiovascular Research
, vol.43
, Issue.4
, pp. 985-991
-
-
Post, W.S.1
Goldschmidt-Clermont, P.J.2
Wilhide, C.C.3
Heldman, A.W.4
Sussman, M.S.5
Ouyang, P.6
Milliken, E.E.7
Issa, J.-P.J.8
-
18
-
-
17344378331
-
DNA methylation, smooth muscle cells, and atherogenesis
-
DOI 10.1161/01.ATV.0000092871.30563.41
-
Hiltunen MO, Yla-Herttuala S. DNA methylation, smooth muscle cells, and atherogenesis. Arterioscler Thromb Vasc Biol. 2003;23:1750-1753. (Pubitemid 37254858)
-
(2003)
Arteriosclerosis, Thrombosis, and Vascular Biology
, vol.23
, Issue.10
, pp. 1750-1753
-
-
Hiltunen, M.O.1
Yla-Herttuala, S.2
-
19
-
-
77649197044
-
Differential DNA methylation correlates with differential expression of angiogenic factors in human heart failure
-
Movassagh M, Choy MK, Goddard M, Bennett MR, Down TA, Foo RS. Differential DNA methylation correlates with differential expression of angiogenic factors in human heart failure. PLoS One. 2010;5:e8564.
-
(2010)
PLoS One
, vol.5
-
-
Movassagh, M.1
Choy, M.K.2
Goddard, M.3
Bennett, M.R.4
Down, T.A.5
Foo, R.S.6
-
20
-
-
63649096271
-
Reciprocal regulation of myocardial microRNAs and messenger RNA in human cardiomyopathy and reversal of the microRNA signature by biomechanical support
-
Matkovich SJ, Van Booven DJ, Youker KA, Torre-Amione G, Diwan A, Eschenbacher WH, Dorn LE, Watson MA, Margulies KB, Dorn GW 2nd. Reciprocal regulation of myocardial microRNAs and messenger RNA in human cardiomyopathy and reversal of the microRNA signature by biomechanical support. Circulation. 2009;119:1263-1271.
-
(2009)
Circulation
, vol.119
, pp. 1263-1271
-
-
Matkovich, S.J.1
Van Booven, D.J.2
Youker, K.A.3
Torre-Amione, G.4
Diwan, A.5
Eschenbacher, W.H.6
Dorn, L.E.7
Watson, M.A.8
Margulies, K.B.9
Dorn, I.I.G.W.10
-
21
-
-
78751684506
-
High-throughput sequencing identifies STAT3 as the DNA-associated factor for p53-NFkappaB-complex-dependent gene expression in human heart failure
-
Choy MK, Movassagh M, Siggens L, Vujic A, Goddard M, Sanchez A, Perkins N, Figg N, Bennett M, Carroll J, Foo R. High-throughput sequencing identifies STAT3 as the DNA-associated factor for p53-NFkappaB-complex-dependent gene expression in human heart failure. Genome Med. 2010;2:37.
-
(2010)
Genome Med
, vol.2
, pp. 37
-
-
Choy, M.K.1
Movassagh, M.2
Siggens, L.3
Vujic, A.4
Goddard, M.5
Sanchez, A.6
Perkins, N.7
Figg, N.8
Bennett, M.9
Carroll, J.10
Foo, R.11
-
22
-
-
46949098742
-
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
-
DOI 10.1038/nbt1414, PII NBT1414
-
Down TA, Rakyan VK, Turner DJ, Flicek P, Li H, Kulesha E, Graf S, Johnson N, Herrero J, Tomazou EM, Thorne NP, Backdahl L, Herberth M, Howe KL, Jackson DK, Miretti MM, Marioni JC, Birney E, Hubbard TJ, Durbin R, Tavare S, Beck S. A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat Biotechnol. 2008;26:779-785. (Pubitemid 351961453)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.7
, pp. 779-785
-
-
Down, T.A.1
Rakyan, V.K.2
Turner, D.J.3
Flicek, P.4
Li, H.5
Kulesha, E.6
Graf, S.7
Johnson, N.8
Herrero, J.9
Tomazou, E.M.10
Thorne, N.P.11
Backdahl, L.12
Herberth, M.13
Howe, K.L.14
Jackson, D.K.15
Miretti, M.M.16
Marioni, J.C.17
Birney, E.18
Hubbard, T.J.P.19
Durbin, R.20
Tavare, S.21
Beck, S.22
more..
-
23
-
-
61349098460
-
Differential chromatin marking of introns and expressed exons by H3K36me3
-
Kolasinska-Zwierz P, Down T, Latorre I, Liu T, Liu XS, Ahringer J. Differential chromatin marking of introns and expressed exons by H3K36me3. Nat Genet. 2009;41:376-381.
-
(2009)
Nat Genet
, vol.41
, pp. 376-381
-
-
Kolasinska-Zwierz, P.1
Down, T.2
Latorre, I.3
Liu, T.4
Liu, X.S.5
Ahringer, J.6
-
24
-
-
77957174102
-
Genome-wide conserved consensus transcription factor binding motifs are hyper-methylated
-
Choy MK, Movassagh M, Goh HG, Bennett MR, Down TA, Foo RS. Genome-wide conserved consensus transcription factor binding motifs are hyper-methylated. BMC Genomics. 2010;11:519.
-
(2010)
BMC Genomics
, vol.11
, pp. 519
-
-
Choy, M.K.1
Movassagh, M.2
Goh, H.G.3
Bennett, M.R.4
Down, T.A.5
Foo, R.S.6
-
25
-
-
77954504873
-
Conserved role of intragenic DNA methylation in regulating alternative promoters
-
Maunakea AK, Nagarajan RP, Bilenky M, Ballinger TJ, D'Souza C, Fouse SD, Johnson BE, Hong C, Nielsen C, Zhao Y, Turecki G, Delaney A, Varhol R, Thiessen N, Shchors K, Heine VM, Rowitch DH, Xing X, Fiore C, Schillebeeckx M, Jones SJ, Haussler D, Marra MA, Hirst M, Wang T, Costello JF. Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature. 2010;466:253-257.
-
(2010)
Nature
, vol.466
, pp. 253-257
-
-
Maunakea, A.K.1
Nagarajan, R.P.2
Bilenky, M.3
Ballinger, T.J.4
D'Souza, C.5
Fouse, S.D.6
Johnson, B.E.7
Hong, C.8
Nielsen, C.9
Zhao, Y.10
Turecki, G.11
Delaney, A.12
Varhol, R.13
Thiessen, N.14
Shchors, K.15
Heine, V.M.16
Rowitch, D.H.17
Xing, X.18
Fiore, C.19
Schillebeeckx, M.20
Jones, S.J.21
Haussler, D.22
Marra, M.A.23
Hirst, M.24
Wang, T.25
Costello, J.F.26
more..
-
26
-
-
34147174284
-
Alternative splicing of ryanodine receptors modulates cardiomyocyte Ca2+ signaling and susceptibility to apoptosis
-
DOI 10.1161/01.RES.0000260804.77807.cf
-
+ signaling and susceptibility to apoptosis. Circ Res. 2007;100:874-883. (Pubitemid 46555693)
-
(2007)
Circulation Research
, vol.100
, Issue.6
, pp. 874-883
-
-
George, C.H.1
Rogers, S.A.2
Bertrand, B.M.A.3
Tunwell, R.E.A.4
Thomas, N.L.5
Steele, D.S.6
Cox, E.V.7
Pepper, C.8
Hazeel, C.J.9
Claycomb, W.C.10
Lai, F.A.11
-
27
-
-
0032539911
-
HL-1 cells: A cardiac muscle cell line that contracts and retains phenotypic characteristics of the adult cardiomyocyte
-
DOI 10.1073/pnas.95.6.2979
-
Claycomb WC, Lanson NA Jr, Stallworth BS, Egeland DB, Delcarpio JB, Bahinski A, Izzo NJ Jr. HL-1 cells: a cardiac muscle cell line that contracts and retains phenotypic characteristics of the adult cardiomyocyte. Proc Natl Acad Sci USA. 1998;95:2979-2984. (Pubitemid 28135840)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.6
, pp. 2979-2984
-
-
Claycomb, W.C.1
Lanson Jr., N.A.2
Stallworth, B.S.3
Egeland, D.B.4
Delcarpio, J.B.5
Bahinski, A.6
Izzo Jr., N.J.7
-
28
-
-
22244435605
-
Epigenetic reactivation of tumor suppressor genes by a novel small-molecule inhibitor of human DNA methyltransferases
-
DOI 10.1158/0008-5472.CAN-04-2957
-
Brueckner B, Garcia Boy R, Siedlecki P, Musch T, Kliem HC, Zielenkiewicz P, Suhai S, Wiessler M, Lyko F. Epigenetic reactivation of tumor suppressor genes by a novel small-molecule inhibitor of human DNA methyltransferases. Cancer Res. 2005;65:6305-6311. (Pubitemid 40994416)
-
(2005)
Cancer Research
, vol.65
, Issue.14
, pp. 6305-6311
-
-
Brueckner, B.1
Boy, R.G.2
Siedlecki, P.3
Musch, T.4
Kliem, H.C.5
Zielenkiewicz, P.6
Suhai, S.7
Wiessler, M.8
Lyko, F.9
-
29
-
-
67650284216
-
A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series.
-
DOI: 10.1007/978-3-642-02008-7-14 Accessed October 17, 2011
-
Stegle OKD, Denby K, Wild DL, Ghahramani Z, Borgwardt KM. A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. Lecture Notes in Computer Science (Research in Computational Molecular Biology). DOI: 10.1007/978-3-642-02008-7-14. http://www.springerlink.com/content/n1vx358044812384. Accessed October 17, 2011.
-
Lecture Notes in Computer Science (Research in Computational Molecular Biology)
-
-
Stegle, O.K.D.1
Denby, K.2
Wild, D.L.3
Ghahramani, Z.4
Borgwardt, K.M.5
-
31
-
-
23044514626
-
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
-
DOI 10.1038/ng1598
-
Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, Lam WL, Schubeler D. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet. 2005;37:853-862. (Pubitemid 41077111)
-
(2005)
Nature Genetics
, vol.37
, Issue.8
, pp. 853-862
-
-
Weber, M.1
Davies, J.J.2
Wittig, D.3
Oakeley, E.J.4
Haase, M.5
Lam, W.L.6
Schubeler, D.7
-
32
-
-
10344260184
-
CpG island methylator phenotype in cancer
-
Issa JP. CpG island methylator phenotype in cancer. Nat Rev Cancer. 2004;4:988-993.
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 988-993
-
-
Issa, J.P.1
-
33
-
-
59149084538
-
The human colon cancer methylome shows similar hypoand hypermethylation at conserved tissue-specific CpG island shores
-
Irizarry RA, Ladd-Acosta C, Wen B, Wu Z, Montano C, Onyango P, Cui H, Gabo K, Rongione M, Webster M, Ji H, Potash JB, Sabunciyan S, Feinberg AP. The human colon cancer methylome shows similar hypoand hypermethylation at conserved tissue-specific CpG island shores. Nat Genet. 2009;41:178-186.
-
(2009)
Nat Genet
, vol.41
, pp. 178-186
-
-
Irizarry, R.A.1
Ladd-Acosta, C.2
Wen, B.3
Wu, Z.4
Montano, C.5
Onyango, P.6
Cui, H.7
Gabo, K.8
Rongione, M.9
Webster, M.10
Ji, H.11
Potash, J.B.12
Sabunciyan, S.13
Feinberg, A.P.14
-
34
-
-
67649292737
-
Unlocking the secrets of the genome
-
Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, Waterston RH. Unlocking the secrets of the genome. Nature. 2009;459:927-930.
-
(2009)
Nature
, vol.459
, pp. 927-930
-
-
Celniker, S.E.1
Dillon, L.A.2
Gerstein, M.B.3
Gunsalus, K.C.4
Henikoff, S.5
Karpen, G.H.6
Kellis, M.7
Lai, E.C.8
Lieb, J.D.9
MacAlpine, D.M.10
Micklem, G.11
Piano, F.12
Snyder, M.13
Stein, L.14
White, K.P.15
Waterston, R.H.16
-
35
-
-
0037414070
-
Microarray measurements of gene expression before and after Left Ventricular Assist Device placement
-
DOI 10.1016/S0735-1097(03)00051-2
-
Bristow MR. Microarray measurements of gene expression before and after left ventricular assist device placement. J Am Coll Cardiol. 2003; 41:1107-1108. (Pubitemid 36384895)
-
(2003)
Journal of the American College of Cardiology
, vol.41
, Issue.7
, pp. 1107-1108
-
-
Bristow, M.R.1
-
36
-
-
33748745399
-
Transcriptional genomics associates FOX transcription factors with human heart failure
-
DOI 10.1161/CIRCULATIONAHA.106.632430, PII 0000301720060919000010
-
Hannenhalli S, Putt ME, Gilmore JM, Wang J, Parmacek MS, Epstein JA, Morrisey EE, Margulies KB, Cappola TP. Transcriptional genomics associates FOX transcription factors with human heart failure. Circulation. 2006;114:1269-1276. (Pubitemid 44402052)
-
(2006)
Circulation
, vol.114
, Issue.12
, pp. 1269-1276
-
-
Hannenhalli, S.1
Putt, M.E.2
Gilmore, J.M.3
Wang, J.4
Parmacek, M.S.5
Epstein, J.A.6
Morrisey, E.E.7
Margulies, K.B.8
Cappola, T.P.9
-
37
-
-
64349091471
-
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
-
Ball MP, Li JB, Gao Y, Lee JH, LeProust EM, Park IH, Xie B, Daley GQ, Church GM. Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat Biotechnol. 2009;27:361-368.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 361-368
-
-
Ball, M.P.1
Li, J.B.2
Gao, Y.3
Lee, J.H.4
Leproust, E.M.5
Park, I.H.6
Xie, B.7
Daley, G.Q.8
Church, G.M.9
-
38
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D, Huarte M, Zuk O, Carey BW, Cassady JP, Cabili MN, Jaenisch R, Mikkelsen TS, Jacks T, Hacohen N, Bernstein BE, Kellis M, Regev A, Rinn JL, Lander ES. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature. 2009;458:223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
Cabili, M.N.11
Jaenisch, R.12
Mikkelsen, T.S.13
Jacks, T.14
Hacohen, N.15
Bernstein, B.E.16
Kellis, M.17
Regev, A.18
Rinn, J.L.19
Lander, E.S.20
more..
-
39
-
-
34447098370
-
A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells
-
DOI 10.1016/j.cell.2007.05.042, PII S0092867407006812
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA. A chromatin landmark and transcription initiation at most promoters in human cells. Cell. 2007;130:77-88. (Pubitemid 47031323)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
40
-
-
77956641239
-
ChIP-Seq identification of weakly conserved heart enhancers
-
Blow MJ, McCulley DJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, Afzal V, Bristow J, Ren B, Black BL, Rubin EM, Visel A, Pennacchio LA. ChIP-Seq identification of weakly conserved heart enhancers. Nat Genet. 2010;42:806-810.
-
(2010)
Nat Genet
, vol.42
, pp. 806-810
-
-
Blow, M.J.1
McCulley, D.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
Afzal, V.11
Bristow, J.12
Ren, B.13
Black, B.L.14
Rubin, E.M.15
Visel, A.16
Pennacchio, L.A.17
-
41
-
-
78449248553
-
FSHD: A repeat contraction disease finally ready to expand (our understanding of its pathogenesis).
-
Pearson CE. FSHD: a repeat contraction disease finally ready to expand (our understanding of its pathogenesis). PLoS Genet. 2010;6:e1001180.
-
(2010)
PLoS Genet
, vol.6
-
-
Pearson, C.E.1
-
42
-
-
36749026295
-
DUX4, a candidate gene of facioscapulohumeral muscular dystrophy, encodes a transcriptional activator of PITX1
-
DOI 10.1073/pnas.0708659104
-
Dixit M, Ansseau E, Tassin A, Winokur S, Shi R, Qian H, Sauvage S, Matteotti C, van Acker AM, Leo O, Figlewicz D, Barro M, Laoudj-Chenivesse D, Belayew A, Coppee F, Chen YW. DUX4, a candidate gene of facioscapulohumeral muscular dystrophy, encodes a transcriptional activator of PITX1. Proc Natl Acad Sci USA. 2007;104:18157-18162. (Pubitemid 350210837)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.46
, pp. 18157-18162
-
-
Dixit, M.1
Ansseau, E.2
Tassin, A.3
Winokur, S.4
Shi, R.5
Qian, H.6
Sauvage, S.7
Matteotti, C.8
Van Acker, A.M.9
Leo, O.10
Figlewicz, D.11
Barro, M.12
Laoudj-Chenivesse, D.13
Belayew, A.14
Coppee, F.15
Chen, Y.-W.16
-
43
-
-
78449250235
-
Facioscapulohumeral dystrophy: Incomplete suppression of a retrotransposed gene
-
Snider L, Geng LN, Lemmers RJ, Kyba M, Ware CB, Nelson AM, Tawil R, Filippova GN, van der Maarel SM, Tapscott SJ, Miller DG. Facioscapulohumeral dystrophy: incomplete suppression of a retrotransposed gene. PLoS Genet. 2010;6:e1001181.
-
(2010)
PLoS Genet
, vol.6
-
-
Snider, L.1
Geng, L.N.2
Lemmers, R.J.3
Kyba, M.4
Ware, C.B.5
Nelson, A.M.6
Tawil, R.7
Filippova, G.N.8
Van Der Maarel, S.M.9
Tapscott, S.J.10
Miller, D.G.11
-
44
-
-
67249104052
-
RNA transcripts, miRNA-sized fragments and proteins produced from D4Z4 units: New candidates for the pathophysiology of facioscapulohumeral dystrophy
-
Snider L, Asawachaicharn A, Tyler AE, Geng LN, Petek LM, Maves L, Miller DG, Lemmers RJ, Winokur ST, Tawil R, van der Maarel SM, Filippova GN, Tapscott SJ. RNA transcripts, miRNA-sized fragments and proteins produced from D4Z4 units: new candidates for the pathophysiology of facioscapulohumeral dystrophy. Hum Mol Genet. 2009;18: 2414-2430.
-
(2009)
Hum Mol Genet
, vol.18
, pp. 2414-2430
-
-
Snider, L.1
Asawachaicharn, A.2
Tyler, A.E.3
Geng, L.N.4
Petek, L.M.5
Maves, L.6
Miller, D.G.7
Lemmers, R.J.8
Winokur, S.T.9
Tawil, R.10
Van Der Maarel, S.M.11
Filippova, G.N.12
Tapscott, S.J.13
-
45
-
-
0345257778
-
Hypomethylation of D4Z4 in 4q-linked and non-4q-linked facioscapulohumeral muscular dystrophy
-
DOI 10.1038/ng1262
-
van Overveld PG, Lemmers RJ, Sandkuijl LA, Enthoven L, Winokur ST, Bakels F, Padberg GW, van Ommen GJ, Frants RR, van der Maarel SM. Hypomethylation of D4Z4 in 4q-linked and non-4q-linked facioscapulohumeral muscular dystrophy. Nat Genet. 2003;35:315-317. (Pubitemid 37486913)
-
(2003)
Nature Genetics
, vol.35
, Issue.4
, pp. 315-317
-
-
Van Overveld, P.G.M.1
Lemmers, R.J.F.L.2
Sandkuijl, L.A.3
Enthoven, L.4
Winokur, S.T.5
Bakels, F.6
Padberg, G.W.7
Van Ommen, G.-J.B.8
Frants, R.R.9
Van Der Maarel, S.M.10
-
46
-
-
68249088114
-
Specific loss of histone H3 lysine 9 trimethylation and HP1gamma/cohesin binding at D4Z4 repeats is associated with facioscapulohumeral dystrophy (FSHD)
-
Zeng W, de Greef JC, Chen YY, Chien R, Kong X, Gregson HC, Winokur ST, Pyle A, Robertson KD, Schmiesing JA, Kimonis VE, Balog J, Frants RR, Ball AR Jr, Lock LF, Donovan PJ, van der Maarel SM, Yokomori K. Specific loss of histone H3 lysine 9 trimethylation and HP1gamma/cohesin binding at D4Z4 repeats is associated with facioscapulohumeral dystrophy (FSHD). PLoS Genet. 2009;5:e1000559.
-
(2009)
PLoS Genet
, vol.5
-
-
Zeng, W.1
De Greef, J.C.2
Chen, Y.Y.3
Chien, R.4
Kong, X.5
Gregson, H.C.6
Winokur, S.T.7
Pyle, A.8
Robertson, K.D.9
Schmiesing, J.A.10
Kimonis, V.E.11
Balog, J.12
Frants, R.R.13
Ball Jr., A.R.14
Lock, L.F.15
Donovan, P.J.16
Van Der Maarel, S.M.17
Yokomori, K.18
-
47
-
-
34547754037
-
Evolutionary conservation of a coding function for D4Z4, the tandem DNA repeat mutated in facioscapulohumeral muscular dystrophy
-
DOI 10.1086/519311
-
Clapp J, Mitchell LM, Bolland DJ, Fantes J, Corcoran AE, Scotting PJ, Armour JA, Hewitt JE. Evolutionary conservation of a coding function for D4Z4, the tandem DNA repeat mutated in facioscapulohumeral muscular dystrophy. Am J Hum Genet. 2007;81:264-279. (Pubitemid 47236075)
-
(2007)
American Journal of Human Genetics
, vol.81
, Issue.2
, pp. 264-279
-
-
Clapp, J.1
Mitchell, L.M.2
Bolland, D.J.3
Fantes, J.4
Corcoran, A.E.5
Scotting, P.J.6
Armour, J.A.L.7
Hewitt, J.E.8
-
48
-
-
70349621645
-
Biphasic myopathic phenotype of mouse DUX, an ORF within conserved FSHDrelated repeats
-
Bosnakovski D, Daughters RS, Xu Z, Slack JM, Kyba M. Biphasic myopathic phenotype of mouse DUX, an ORF within conserved FSHDrelated repeats. PLoS One. 2009;4:e7003.
-
(2009)
PLoS One
, vol.4
-
-
Bosnakovski, D.1
Daughters, R.S.2
Xu, Z.3
Slack, J.M.4
Kyba, M.5
-
49
-
-
3342989681
-
Epigenetic programming by maternal behavior
-
DOI 10.1038/nn1276
-
Weaver IC, Cervoni N, Champagne FA, D'Alessio AC, Sharma S, Seckl JR, Dymov S, Szyf M, Meaney MJ. Epigenetic programming by maternal behavior. Nat Neurosci. 2004;7(8):847-854. (Pubitemid 38989508)
-
(2004)
Nature Neuroscience
, vol.7
, Issue.8
, pp. 847-854
-
-
Weaver, I.C.G.1
Cervoni, N.2
Champagne, F.A.3
D'Alessio, A.C.4
Sharma, S.5
Seckl, J.R.6
Dymov, S.7
Szyf, M.8
Meaney, M.J.9
-
50
-
-
0031873353
-
Maternal epigenetics and methyl supplements affect agouti gene expression in A(vy)/a mice
-
Wolff GL, Kodell RL, Moore SR, Cooney CA. Maternal epigenetics and methyl supplements affect agouti gene expression in Avy/a mice. FASEB J. 1998;12:949-957. (Pubitemid 28359576)
-
(1998)
FASEB Journal
, vol.12
, Issue.11
, pp. 949-957
-
-
Wolff, G.L.1
Kodell, R.L.2
Moore, S.R.3
Cooney, C.A.4
-
51
-
-
0043093697
-
Transposable elements: Targets for early nutritional effects on epigenetic gene regulation
-
DOI 10.1128/MCB.23.15.5293-5300.2003
-
Waterland RA, Jirtle RL. Transposable elements: targets for early nutritional effects on epigenetic gene regulation. Mol Cell Biol. 2003;23: 5293-5300. (Pubitemid 36950884)
-
(2003)
Molecular and Cellular Biology
, vol.23
, Issue.15
, pp. 5293-5300
-
-
Waterland, R.A.1
Jirtle, R.L.2
-
52
-
-
0242584449
-
Induction of tumors in mice by genomic hypomethylation
-
DOI 10.1126/science.1083558
-
Gaudet F, Hodgson JG, Eden A, Jackson-Grusby L, Dausman J, Gray JW, Leonhardt H, Jaenisch R. Induction of tumors in mice by genomic hypomethylation. Science. 2003;300:489-492. (Pubitemid 36444330)
-
(2003)
Science
, vol.300
, Issue.5618
, pp. 489-492
-
-
Gaudet, F.1
Hodgson, J.G.2
Eden, A.3
Jackson-Grusby, L.4
Dausman, J.5
Gray, J.W.6
Leonhardt, H.7
Jaenisch, R.8
-
53
-
-
77956139754
-
Dnmt3a regulates emotional behavior and spine plasticity in the nucleus accumbens
-
LaPlant Q, Vialou V, Covington HE 3rd, Dumitriu D, Feng J, Warren BL, Maze I, Dietz DM, Watts EL, Iniguez SD, Koo JW, Mouzon E, Renthal W, Hollis F, Wang H, Noonan MA, Ren Y, Eisch AJ, Bolanos CA, Kabbaj M, Xiao G, Neve RL, Hurd YL, Oosting RS, Fan G, Morrison JH, Nestler EJ. Dnmt3a regulates emotional behavior and spine plasticity in the nucleus accumbens. Nat Neurosci. 2010;13:1137-1143.
-
(2010)
Nat Neurosci
, vol.13
, pp. 1137-1143
-
-
Laplant, Q.1
Vialou, V.2
Covington Iii, H.E.3
Dumitriu, D.4
Feng, J.5
Warren, B.L.6
Maze, I.7
Dietz, D.M.8
Watts, E.L.9
Iniguez, S.D.10
Koo, J.W.11
Mouzon, E.12
Renthal, W.13
Hollis, F.14
Wang, H.15
Noonan, M.A.16
Ren, Y.17
Eisch, A.J.18
Bolanos, C.A.19
Kabbaj, M.20
Xiao, G.21
Neve, R.L.22
Hurd, Y.L.23
Oosting, R.S.24
Fan, G.25
Morrison, J.H.26
Nestler, E.J.27
more..
-
54
-
-
67549119096
-
CTCF: Master weaver of the genome
-
Phillips JE, Corces VG. CTCF: master weaver of the genome. Cell. 2009;137:1194-1211.
-
(2009)
Cell
, vol.137
, pp. 1194-1211
-
-
Phillips, J.E.1
Corces, V.G.2
-
55
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker J. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science. 2009;326:289-293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
Sandstrom, R.11
Bernstein, B.12
Bender, M.A.13
Groudine, M.14
Gnirke, A.15
Stamatoyannopoulos, J.16
Mirny, L.A.17
Lander, E.S.18
Dekker, J.19
-
56
-
-
78049519411
-
Intra-and interchromosomal interactions correlate with CTCF binding genome wide
-
Botta M, Haider S, Leung IX, Lio P, Mozziconacci J. Intra-and interchromosomal interactions correlate with CTCF binding genome wide. Mol Syst Biol. 2010;6:426.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 426
-
-
Botta, M.1
Haider, S.2
Leung, I.X.3
Lio, P.4
Mozziconacci, J.5
-
57
-
-
4444261501
-
The binding sites for the chromatin insulator protein CTCF map to DNA methylation-free domains genome-wide
-
DOI 10.1101/gr.2408304
-
Mukhopadhyay R, Yu W, Whitehead J, Xu J, Lezcano M, Pack S, Kanduri C, Kanduri M, Ginjala V, Vostrov A, Quitschke W, Chernukhin I, Klenova E, Lobanenkov V, Ohlsson R. The binding sites for the chromatin insulator protein CTCF map to DNA methylation-free domains genome-wide. Genome Res. 2004;14:1594-1602. (Pubitemid 39193410)
-
(2004)
Genome Research
, vol.14
, Issue.8
, pp. 1594-1602
-
-
Mukhopadhyay, R.1
Yu, W.Q.2
Whitehead, J.3
Xu, J.W.4
Lezcano, M.5
Pack, S.6
Kanduri, C.7
Kanduri, M.8
Ginjala, V.9
Vostrov, A.10
Quitschke, W.11
Chernukhin, I.12
Klenova, E.13
Lobanenkov, V.14
Ohlsson, R.15
|