Systems biocatalysis: An artificial metabolism for interconversion of functional groups

ACS Catalysis

Volumn 5, Issue 3, 2015, Pages 1604-1608

  Tessaro, D ^a,b   Pollegioni, L ^b   Piubelli, L ^b   D'Arrigo, Paola ^a,b   Servi, S ^b  

^a POLITECNICO DI MILANO   (Italy)

^b UNIVERSITY OF INSUBRIA   (Italy)

Author keywords

artificial metabolism; functional group interconversion; futile cycle; multistep catalysis; synthetic biology; systems biocatalysis

Indexed keywords

BIOCATALYSTS; ENZYME INHIBITION; ENZYMES; FUNCTIONAL GROUPS; METABOLISM; MOBILE SECURITY; PHYSIOLOGY;

BIOCATALYSIS; FUTILE CYCLE; INTERCONVERSIONS; MULTI-STEP; SYNTHETIC BIOLOGY;

CATALYSIS;

EID: 84924251672     PISSN: None     EISSN: 21555435     Source Type: Journal    
DOI: 10.1021/cs502064s     Document Type: Article

References (56)

1. Arnold, F. H. Nature 2001, 409, 253-7 10.1038/35051731
2. Bornscheuer, U.; Huisman, G.; Kazlauskas, R.; Lutz, S.; Moore, J.; Robins, K. Nature 2012, 485, 185-194 10.1038/nature11117
3. Pollegioni, L.; Molla, G. Trends Biotechnol. 2011, 29, 276-283 10.1016/j.tibtech.2011.01.010
4. Lopez-Gallego, F.; Schmidt-Dannert, C. Curr. Opin. Chem. Biol. 2010, 14, 174-183 10.1016/j.cbpa.2009.11.023
5. Turner, N. J. Nat. Chem. Biol. 2009, 5, 567-73 10.1038/nchembio.203
6. Yoshikuni, Y.; Ferrin, T. E.; Keasling, J. D. Nature 2006, 440, 1078-82 10.1038/nature04607
7. Seelig, B.; Szostak, J. W. Nature 2007, 448, 828-31 10.1038/nature06032
8. Gupta, R. D.; Tawfik, D. S. Nat. Methods 2008, 5, 939-42 10.1038/nmeth.1262
9. Henry, C. S.; Broadbelt, L. J.; Hatzimanikatis, V. Biotechnol. Bioeng. 2010, 106, 462-473 10.1002/bit.22673
10. Fessner, W.-D.; Walter, C. Angew. Chem., Int. Ed. 1992, 31, 614-616 10.1002/anie.199206141
11. Guterl, J. K.; Sieber, V. Eng. Life Sci. 2013, 13, 4-18 10.1002/elsc.201100231
12. Guterl, J.-K.; Garbe, D.; Carsten, J.; Steffler, F.; Sommer, B.; Reiße, S.; Philipp, A.; Haack, M.; Rühmann, B.; Koltermann, A.; Kettling, U.; Brück, T.; Sieber, V. ChemSusChem 2012, 5, 2165-2172 10.1002/cssc.201200365
13. Fessner, W.-D. New Biotechnol. 2014, 31 (Supplement) S74 10.1016/j.nbt.2014.05.1781
14. Soh, K. C.; Hatzimanikatis, V. Trends Biotechnol. 2010, 28, 501-8 10.1016/j.tibtech.2010.07.002
15. Fessner, W.-D. New Biotechnol., http://dx.doi.org/10.1016/j.nbt.2014.11.007.
16. Zhu, F.; Zhong, X.; Hu, M.; Lu, L.; Deng, Z.; Liu, T. Biotechnol. Bioeng. 2014, 111, 1396-1405 10.1002/bit.25198
17. Wu, S. K.; Chen, Y. Z.; Xu, Y.; Li, A. T.; Xu, Q. S.; Glieder, A.; Li, Z. ACS Catal. 2014, 4, 409-420 10.1021/cs400992z
18. Qi, P.; You, C.; Zhang, Y. H. P. ACS Catal. 2014, 4, 1311-1317 10.1021/cs400961a
19. Kohls, H.; Steffen-Munsberg, F.; Hohne, M. Curr. Opin. Chem. Biol. 2014, 19, 180-192 10.1016/j.cbpa.2014.02.021
20. Simon, R. C.; Richter, N.; Busto, E.; Kroutil, W. ACS Catal. 2014, 4, 129-143 10.1021/cs400930v
21. Classen, T.; Korpak, M.; Scholzel, M.; Pietruszka, J. ACS Catal. 2014, 4, 1321-1331 10.1021/cs5000262
22. Myung, S.; Zhang, Y. H. P. PLoS One 2013, 8, 61500 10.1371/journal.pone.0061500
23. Martin del Campo, J. S.; Rollin, J.; Myung, S.; Chun, Y.; Chandrayan, S.; Patino, R.; Adams, M. W. W.; Zhang, Y. H. P. Angew. Chem., Int. Ed. 2013, 52, 4587-4590 10.1002/anie.201300766
24. Steffler, F.; Guterl, J. K.; Sieber, V. Enzyme Microb. Technol. 2013, 53, 307-314 10.1016/j.enzmictec.2013.07.002
25. Rollin, J. A.; Tam, T. K.; Zhang, Y. H. P. Green Chem. 2013, 15, 1708-1719 10.1039/c3gc40625c
26. Oberleitner, N.; Peters, C.; Muschiol, J.; Kadow, M.; Sass, S.; Bayer, T.; Schaaf, P.; Iqbal, N.; Rudroff, F.; Mihovilovic, M. D.; Bornscheuer, U. T. ChemCatChem 2013, 5, 3524-3528 10.1002/cctc.201300604
27. Yu, X.; Liu, T.; Zhu, F.; Khosla, C. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 18643-18648 10.1073/pnas.1110852108
28. Santacoloma, P. A.; Sin, G.; Gernaey, K. V.; Woodley, J. M. Org. Process Res. Dev. 2011, 15, 203-212 10.1021/op1002159
29. Schultheisz, H. L.; Szymczyna, B. R.; Scott, L. G.; Williamson, J. R. J. Am. Chem. Soc. 2011, 133, 297-304 10.1021/ja1059685
30. Ricca, E.; Brucher, B.; Schrittwieser, J. H. Adv. Synth. Catal. 2011, 353, 2239-2262 10.1002/adsc.201100256
31. Bujara, M.; Schümperli, M.; Billerbeck, S.; Heinemann, M.; Panke, S. Biotechnol. Bioeng. 2010, 106, 376-389 10.1002/bit.22666
32. Welch, P.; Scopes, R. K. J. Biotechnol. 1985, 2, 257-273 10.1016/0168-1656(85)90029-X
33. Liu, Q.; Wu, K.; Cheng, Y.; Lu, L.; Xiao, E.; Zhang, Y.; Deng, Z.; Liu, T. Metab. Eng. 2015, 28, 82-90 10.1016/j.ymben.2014.12.004
34. Liu, R.; Zhu, F.; Lu, L.; Fu, A.; Lu, J.; Deng, Z.; Liu, T. Metab. Eng. 2014, 22, 10-21 10.1016/j.ymben.2013.12.004
35. Swartz, J. R. Chem. Eng. Prog. 2013, 109, 40-45
36. Woolston, B. M.; Edgar, S.; Stephanopoulos, G. Annu. Rev. Chem. Biomol. Eng. 2013, 4, 259-288 10.1146/annurev-chembioeng-061312-103312
37. Stephanopoulos, G. ACS Synth. Biol. 2012, 1, 514-525 10.1021/sb300094q
38. Yim, H.; Haselbeck, R.; Niu, W.; Pujol-Baxley, C.; Burgard, A.; Boldt, J.; Khandurina, J.; Trawick, J. D.; Osterhout, R. E.; Stephen, R. Nat. Chem. Biol. 2011, 7, 445-452 10.1038/nchembio.580
39. Dueber, J. E.; Wu, G. C.; Malmirchegini, G. R.; Moon, T. S.; Petzold, C. J.; Ullal, A. V.; Prather, K. L. J.; Keasling, J. D. Nat. Biotechnol. 2009, 27, 753-U107 10.1038/nbt.1557
40. Wilner, O. I.; Weizmann, Y.; Gill, R.; Lioubashevski, O.; Freeman, R.; Willner, I. Nat. Nanotechnol. 2009, 4, 249-254 10.1038/nnano.2009.50
41. Keasling, J. D. ACS Chem. Biol. 2008, 3, 64-76 10.1021/cb7002434
42. Katsuyama, Y.; Funa, N.; Miyahisa, I.; Horinouchi, S. Chem. Biol. 2007, 14, 613-621 10.1016/j.chembiol.2007.05.004
43. Watts, K. T.; Lee, P. C.; Schmidt-Dannert, C. BMC Biotechnol. 2006, 6, 22 10.1186/1472-6750-6-22
44. Lutke-Eversloh, T.; Fischer, A.; Remminghorst, U.; Kawada, J.; Marchessault, R. H.; Bogershausen, A.; Kalwei, M.; Eckert, H.; Reichelt, R.; Liu, S. J.; Steinbuchel, A. Nat. Mater. 2002, 1, 236-240 10.1038/nmat773
45. Chen, X. X.; Zhang, C. Q.; Zou, R. Y.; Zhou, K.; Stephanopoulos, G.; Too, H. P. PLoS One 2013, 8, 79650 10.1371/journal.pone.0079650
46. Miskovic, L.; Hatzimanikatis, V. Trends Biotechnol. 2010, 28, 391-397 10.1016/j.tibtech.2010.05.003
47. Qian, H.; Beard, D. A. IEE Proc. Syst. Biol. 2006, 153, 192-200 10.1049/ip-syb:20050086
48. Jones, M.; Berry, M.; Phillips, J. J. Theor. Biol. 2002, 217, 509-523 10.1006/jtbi.2002.3042
49. Hue, L. Adv. Enzymol. Relat. Areas Mol. Biol. 1981, 52, 247-331 10.1002/9780470122976.ch4
50. Hers, H. Biochem. Soc. Trans. 1976, 4, 985-988
51. Weiner, B.; Poelarends, G. J.; Janssen, D. B.; Feringa, B. L. Chem.-Eur. J. 2008, 14, 10094-10100 10.1002/chem.200801407
52. Pollegioni, L.; Motta, P.; Molla, G. Appl. Microbiol. Biotechnol. 2013, 97, 9323-9341 10.1007/s00253-013-5230-1
53. Bifulco, D.; Pollegioni, L.; Tessaro, D.; Servi, S.; Molla, G. Appl. Microbiol. Biotechnol. 2013, 97, 7285-7295 10.1007/s00253-013-4688-1
54. Molla, G.; Porrini, D.; Job, V.; Motteran, L.; Vegezzi, C.; Campaner, S.; Pilone, M. S.; Pollegioni, L. J. Biol. Chem. 2000, 275, 24715-24721 10.1074/jbc.M908193199
55. Harris, C. M.; Molla, G.; Pilone, M. S.; Pollegioni, L. J. Biol. Chem. 1999, 274, 36233-36240 10.1074/jbc.274.51.36233
56. Meijer, A. J.; Lamers, W. H.; Chamuleau, R. Physiol. Rev. 1990, 70, 701-748