-
2
-
-
34548792911
-
Marine viruses - major players in the global ecosystem
-
Suttle, C. A. Marine viruses - major players in the global ecosystem. Nature Rev. Microbiol. 5, 801-812 (2007).
-
(2007)
Nature Rev. Microbiol.
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
3
-
-
44449137093
-
The microbial engines that drive earth's biogeochemical cycles
-
Falkowski, P. G., Fenchel, T.&Delong, E. F. The microbial engines that drive earth's biogeochemical cycles. Science 320, 1034-1039 (2008).
-
(2008)
Science
, vol.320
, pp. 1034-1039
-
-
Falkowski, P.G.1
Fenchel, T.2
Delong, E.F.3
-
4
-
-
79953002220
-
Nitrogen cycle of the open ocean: From genes to ecosystems
-
Zehr, J. P.&Kudela, R. M. Nitrogen cycle of the open ocean: from genes to ecosystems. Ann. Rev. Mar. Sci. 3, 197-225 (2011).
-
(2011)
Ann. Rev. Mar. Sci.
, vol.3
, pp. 197-225
-
-
Zehr, J.P.1
Kudela, R.M.2
-
5
-
-
0001499953
-
The ecological role of water-column microbes in the sea
-
Azam, F., Fenchel, T., Field, J. G., Gray, J. S.&Thingstad, T. F. The ecological role of water-column microbes in the sea. Mar. Ecol. Prog. Ser. 10, 257-263 (1983).
-
(1983)
Mar. Ecol. Prog. Ser.
, vol.10
, pp. 257-263
-
-
Azam, F.1
Fenchel, T.2
Field, J.G.3
Gray, J.S.4
Thingstad, T.F.5
-
6
-
-
0002842298
-
-
(ed. Marshall, K. C.) Springer
-
Pace, N. R., Stahl, D. A., Lane, D. J.&Olsen, G. J. in Advances in Microbial Ecology (ed. Marshall, K. C.) 1-55 (Springer, 1986).
-
(1986)
Advances in Microbial Ecology
, pp. 1-55
-
-
Pace, N.R.1
Stahl, D.A.2
Lane, D.J.3
Olsen, G.J.4
-
7
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
Sogin, M. L. et al. Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc. Natl Acad. Sci. USA 103, 12115-12120 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
-
8
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
Caporaso, J. G. et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6, 1621-1624 (2012).
-
(2012)
ISME J.
, vol.6
, pp. 1621-1624
-
-
Caporaso, J.G.1
-
10
-
-
0034625847
-
Diel periodicity of bacterioplankton in the euphotic zone of the subtropical Atlantic Ocean
-
Kuipers, B., van Noort, G. J., Vosjan, J.&Herndl, G. J. Diel periodicity of bacterioplankton in the euphotic zone of the subtropical Atlantic Ocean. Mar. Ecol. Prog. Ser. 201, 13-25 (2000).
-
(2000)
Mar. Ecol. Prog. Ser.
, vol.201
, pp. 13-25
-
-
Kuipers, B.1
Van Noort, G.J.2
Vosjan, J.3
Herndl, G.J.4
-
11
-
-
0002301607
-
Diel variations in bacterioplankton, phytoplankton, and related parameters in the Southern California Bight
-
Fuhrman, J. A., Eppley, R. W., Hagstrom, A.&Azam, F. Diel variations in bacterioplankton, phytoplankton, and related parameters in the Southern California Bight. Mar. Ecol. Prog. Ser. 27, 9-20 (1985).
-
(1985)
Mar. Ecol. Prog. Ser.
, vol.27
, pp. 9-20
-
-
Fuhrman, J.A.1
Eppley, R.W.2
Hagstrom, A.3
Azam, F.4
-
12
-
-
0032499098
-
Diel variations in bacterial heterotrophic activity and growth in the northwestern Mediterranean Sea
-
Gasol, J. M. et al. Diel variations in bacterial heterotrophic activity and growth in the northwestern Mediterranean Sea. Mar. Ecol. Prog. Ser. 164, 107-124 (1998).
-
(1998)
Mar. Ecol. Prog. Ser.
, vol.164
, pp. 107-124
-
-
Gasol, J.M.1
-
13
-
-
0034975438
-
Diel patterns of growth and division in marine picoplankton in culture
-
Jacquet, S. et al. Diel patterns of growth and division in marine picoplankton in culture. J. Phycol. 37, 357-369 (2001).
-
(2001)
J. Phycol.
, vol.37
, pp. 357-369
-
-
Jacquet, S.1
-
14
-
-
70349188497
-
Short-term variability in primary productivity during a wind-driven diatom bloom in the Gulf of Eilat (Aqaba)
-
Iluz, D. et al. Short-term variability in primary productivity during a wind-driven diatom bloom in the Gulf of Eilat (Aqaba). Aquat. Microb. Ecol. 56, 205-215 (2009).
-
(2009)
Aquat. Microb. Ecol.
, vol.56
, pp. 205-215
-
-
Iluz, D.1
-
15
-
-
84860488672
-
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom
-
Teeling, H. et al. Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science 336, 608-611 (2012).
-
(2012)
Science
, vol.336
, pp. 608-611
-
-
Teeling, H.1
-
16
-
-
84915821249
-
Diversity and activity of marine bacterioplankton during a diatom bloom in the North Sea assessed by total RNA and pyrotag sequencing
-
Klindworth, A. et al. Diversity and activity of marine bacterioplankton during a diatom bloom in the North Sea assessed by total RNA and pyrotag sequencing. Mar. Genomics 18, 185-192 (2014).
-
(2014)
Mar. Genomics
, vol.18
, pp. 185-192
-
-
Klindworth, A.1
-
17
-
-
84908642290
-
Master recyclers: Features and functions of bacteria associated with phytoplankton blooms
-
Buchan, A., LeCleir, G. R., Gulvik, C. A.&González, J. M. Master recyclers: features and functions of bacteria associated with phytoplankton blooms. Nature Rev. Microbiol. 12, 686-698 (2014).
-
(2014)
Nature Rev. Microbiol.
, vol.12
, pp. 686-698
-
-
Buchan, A.1
Lecleir, G.R.2
Gulvik, C.A.3
González, J.M.4
-
18
-
-
78650777550
-
Time-series analyses of Monterey Bay coastal microbial picoplankton using a "genome proxy" microarray
-
Rich, V. I., Pham, V. D., Eppley, J., Shi, Y.&DeLong, E. F. Time-series analyses of Monterey Bay coastal microbial picoplankton using a "genome proxy" microarray. Environ. Microbiol. 13, 116-134 (2011).
-
(2011)
Environ. Microbiol.
, vol.13
, pp. 116-134
-
-
Rich, V.I.1
Pham, V.D.2
Eppley, J.3
Shi, Y.4
Delong, E.F.5
-
19
-
-
0023520514
-
Climate and chlorophyll a: Long-term trends in the central north Pacific Ocean
-
Venrick, E. L., McGowan, J. A., Cayan, D. R.&Hayward, T. L. Climate and chlorophyll a: long-term trends in the central north Pacific Ocean. Science 238, 70-72 (1985).
-
(1985)
Science
, vol.238
, pp. 70-72
-
-
Venrick, E.L.1
McGowan, J.A.2
Cayan, D.R.3
Hayward, T.L.4
-
20
-
-
77955581357
-
Nutrient cycles and marine microbes in a CO2-enriched ocean
-
Hutchins, D. A., Mulholland, M. R.&Feixue, F. Nutrient cycles and marine microbes in a CO2-enriched ocean. Oceanography 22, 128-145 (2009).
-
(2009)
Oceanography
, vol.22
, pp. 128-145
-
-
Hutchins, D.A.1
Mulholland, M.R.2
Feixue, F.3
-
21
-
-
84908619353
-
Microbial oceanography and the Hawaii Ocean Time-series programme
-
Karl, D. M.&Church, M. J. Microbial oceanography and the Hawaii Ocean Time-series programme. Nature Rev. Microbiol. 12, 1-15 (2014).
-
(2014)
Nature Rev. Microbiol.
, vol.12
, pp. 1-15
-
-
Karl, D.M.1
Church, M.J.2
-
22
-
-
49649095625
-
Spreading dead zones and consequences for marine ecosystems
-
Diaz, R. J.&Rosenberg, R. Spreading dead zones and consequences for marine ecosystems. Science 321, 926-929 (2008).
-
(2008)
Science
, vol.321
, pp. 926-929
-
-
Diaz, R.J.1
Rosenberg, R.2
-
23
-
-
0002830646
-
Dansgaard-Oeschger cycles and the California Current System: Planktonic foraminiferal response to rapid climate change in Santa Barbara Basin, Ocean Drilling Program hole 893A
-
Hendy, I. L.&Kennett, J. P. Dansgaard-Oeschger cycles and the California Current System: planktonic foraminiferal response to rapid climate change in Santa Barbara Basin, Ocean Drilling Program hole 893A. Paleoceanography 15, 30-42 (2000).
-
(2000)
Paleoceanography
, vol.15
, pp. 30-42
-
-
Hendy, I.L.1
Kennett, J.P.2
-
24
-
-
0000540605
-
Late Quaternary climatically related planktonic foraminiferal assemblage changes: Hole 893A, Santa Barbara Basin, California
-
Kennett, J. P.&Venz, K. Late Quaternary climatically related planktonic foraminiferal assemblage changes: Hole 893A, Santa Barbara Basin, California. Proc. ODP Sci. Rep. 146, 281-293 (1995).
-
(1995)
Proc. ODP Sci. Rep.
, vol.146
, pp. 281-293
-
-
Kennett, J.P.1
Venz, K.2
-
25
-
-
21144456174
-
Climatically driven macroevolutionary patterns in the size of marine diatoms over the Cenozoic
-
Finkel, Z. V., Katz, M. E., Wright, J. D., Schofield, O. M. E.&Falkowski, P. G. Climatically driven macroevolutionary patterns in the size of marine diatoms over the Cenozoic. Proc. Natl Acad. Sci. USA 102, 8927-8932 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 8927-8932
-
-
Finkel, Z.V.1
Katz, M.E.2
Wright, J.D.3
Schofield, O.M.E.4
Falkowski, P.G.5
-
26
-
-
38049174464
-
A universal driver of macroevolutionary change in the size of marine phytoplankton over the Cenozoic
-
Finkel, Z. V. et al. A universal driver of macroevolutionary change in the size of marine phytoplankton over the Cenozoic. Proc. Natl Acad. Sci. USA 104, 20416-20420 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 20416-20420
-
-
Finkel, Z.V.1
-
27
-
-
0028562972
-
Seasonal patterns of ocean biogeochemistry at the U.S. JGOFS Bermuda Atlantic time-series study site
-
Michaels, A. F. et al. Seasonal patterns of ocean biogeochemistry at the U.S. JGOFS Bermuda Atlantic time-series study site. Deep Sea Res. Part I Oceanogr. Res. Pap. 41, 1013-1038 (1994).
-
(1994)
Deep Sea Res. Part i Oceanogr. Res. Pap.
, vol.41
, pp. 1013-1038
-
-
Michaels, A.F.1
-
28
-
-
25144481245
-
Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site
-
Morris, R. M. et al. Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site. Limnol. Oceanogr. 50, 1687-1696 (2005).
-
(2005)
Limnol. Oceanogr.
, vol.50
, pp. 1687-1696
-
-
Morris, R.M.1
-
29
-
-
70349472694
-
Seasonality and vertical structure of microbial communities in an ocean gyre
-
Treusch, A. H. et al. Seasonality and vertical structure of microbial communities in an ocean gyre. ISME J. 3, 1148-1163 (2009).
-
(2009)
ISME J.
, vol.3
, pp. 1148-1163
-
-
Treusch, A.H.1
-
30
-
-
84859994630
-
Basin-scale patterns in the abundance of SAR11 subclades, marine Actinobacteria (OM1), members of the Roseobacter clade and OCS116 in the South Atlantic
-
Morris, R. M., Frazar, C. D.&Carlson, C. A. Basin-scale patterns in the abundance of SAR11 subclades, marine Actinobacteria (OM1), members of the Roseobacter clade and OCS116 in the South Atlantic. Environ. Microbiol. 14, 1133-1144 (2012).
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 1133-1144
-
-
Morris, R.M.1
Frazar, C.D.2
Carlson, C.A.3
-
31
-
-
84857029292
-
Seasonality in ocean microbial communities
-
Giovannoni, S. J.&Vergin, K. L. Seasonality in ocean microbial communities. Science 335, 671-676 (2012).
-
(2012)
Science
, vol.335
, pp. 671-676
-
-
Giovannoni, S.J.1
Vergin, K.L.2
-
32
-
-
84880919986
-
High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences
-
Vergin, K. L. et al. High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences. ISME J. 7, 1322-1332 (2013).
-
(2013)
ISME J.
, vol.7
, pp. 1322-1332
-
-
Vergin, K.L.1
-
33
-
-
84889051477
-
Spatiotemporal distributions of rare bacterioplankton populations indicate adaptive strategies in the oligotrophic ocean
-
Vergin, K. L., Done, B., Carlson, C.&Giovannoni, S. J. Spatiotemporal distributions of rare bacterioplankton populations indicate adaptive strategies in the oligotrophic ocean. Aquat. Microb. Ecol. 71, 1-13 (2013).
-
(2013)
Aquat. Microb. Ecol.
, vol.71
, pp. 1-13
-
-
Vergin, K.L.1
Done, B.2
Carlson, C.3
Giovannoni, S.J.4
-
34
-
-
0035031806
-
Overview of the US JGOFS Bermuda Atlantic Time-series Study (BATS): A decade-scale look at ocean biology and biogeochemistry
-
Steinberg, D. K. et al. Overview of the US JGOFS Bermuda Atlantic Time-series Study (BATS): a decade-scale look at ocean biology and biogeochemistry. Deep Sea Res. Part II 48, 1405-1447 (2001).
-
(2001)
Deep Sea Res. Part II
, vol.48
, pp. 1405-1447
-
-
Steinberg, D.K.1
-
35
-
-
84963088893
-
On conditions for the vernal blooming of phytoplankton
-
Sverdrup, H. U. On conditions for the vernal blooming of phytoplankton. J. Cons. Int. Explor. Mer. 18, 287-295 (1953).
-
(1953)
J. Cons. Int. Explor. Mer.
, vol.18
, pp. 287-295
-
-
Sverdrup, H.U.1
-
36
-
-
0010180675
-
Primary production in the southwest Sargasso Sea, January-February 1960
-
Ryther, J. H.&Menzel, D. W. Primary production in the southwest Sargasso Sea, January-February 1960. Bull. Mar. Sci. Gulf Caribb. 11, 381-388 (1961).
-
(1961)
Bull. Mar. Sci. Gulf Caribb.
, vol.11
, pp. 381-388
-
-
Ryther, J.H.1
Menzel, D.W.2
-
37
-
-
0001174545
-
Annual variations in primary production of the Sargasso Sea off Bermuda
-
Menzel, D. W.&Ryther, J. H. Annual variations in primary production of the Sargasso Sea off Bermuda. Deep Sea Res. 7, 282-288 (1961).
-
(1961)
Deep Sea Res.
, vol.7
, pp. 282-288
-
-
Menzel, D.W.1
Ryther, J.H.2
-
38
-
-
0035033936
-
Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso Sea
-
DuRand, M. D., Olson, R. J.&Chisholm, S. W. Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso Sea. Deep Sea Res. Part II 48, 1983-2003 (2001).
-
(2001)
Deep Sea Res. Part II
, vol.48
, pp. 1983-2003
-
-
Durand, M.D.1
Olson, R.J.2
Chisholm, S.W.3
-
39
-
-
84855931244
-
Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea
-
Parsons, R. J., Breitbart, M., Lomas, M. W.&Carlson, C. A. Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea. ISME J. 6, 273-284 (2012).
-
(2012)
ISME J.
, vol.6
, pp. 273-284
-
-
Parsons, R.J.1
Breitbart, M.2
Lomas, M.W.3
Carlson, C.A.4
-
40
-
-
44749090749
-
Microbial dynamics in cyclonic and anticyclonic mode-water eddies in the northwestern Sargasso Sea
-
Ewart, C. S., Meyers, M. K., Wallner, E. R., McGillicuddy, D. J.&Carlson, C. A. Microbial dynamics in cyclonic and anticyclonic mode-water eddies in the northwestern Sargasso Sea. Deep Sea Res. Part II 55, 1334-1347 (2008).
-
(2008)
Deep Sea Res. Part II
, vol.55
, pp. 1334-1347
-
-
Ewart, C.S.1
Meyers, M.K.2
Wallner, E.R.3
McGillicuddy, D.J.4
Carlson, C.A.5
-
41
-
-
0346816514
-
Biogeochemical impacts due to mesoscale eddy activity in the Sargasso Sea as measured at the Bermuda Atlantic Time-series Study (BATS)
-
Sweeney, E. N., McGillicuddy, D. J.&Buesseler, K. O. Biogeochemical impacts due to mesoscale eddy activity in the Sargasso Sea as measured at the Bermuda Atlantic Time-series Study (BATS). Deep Sea Res. Part II 50, 3017-3039 (2003).
-
(2003)
Deep Sea Res. Part II
, vol.50
, pp. 3017-3039
-
-
Sweeney, E.N.1
McGillicuddy, D.J.2
Buesseler, K.O.3
-
42
-
-
84894729337
-
Community differentiation and population enrichment of Sargasso Sea bacterioplankton in the euphotic zone of a mesoscale mode-water eddy
-
Nelson, C. E., Carlson, C. A., Ewart, C. S.&Halewood, E. R. Community differentiation and population enrichment of Sargasso Sea bacterioplankton in the euphotic zone of a mesoscale mode-water eddy. Environ. Microbiol. 16, 871-887 (2014).
-
(2014)
Environ. Microbiol.
, vol.16
, pp. 871-887
-
-
Nelson, C.E.1
Carlson, C.A.2
Ewart, C.S.3
Halewood, E.R.4
-
43
-
-
0029729552
-
The Hawaii Ocean Time-series (HOT) program: Background, rationale and field implementation
-
Karl, D. M.&Lukas, R. The Hawaii Ocean Time-series (HOT) program: background, rationale and field implementation. Deep Sea Res. Part II 43, 129-156 (1996).
-
(1996)
Deep Sea Res. Part II
, vol.43
, pp. 129-156
-
-
Karl, D.M.1
Lukas, R.2
-
44
-
-
84880822234
-
Sea change: Charting the course for biogeochemical ocean time-series research in a new millennium
-
Church, M. J., Lomas, M. W.&Muller-Karger, F. Sea change: charting the course for biogeochemical ocean time-series research in a new millennium. Deep Sea Res. Part II 93, 2-15 (2013).
-
(2013)
Deep Sea Res. Part II
, vol.93
, pp. 2-15
-
-
Church, M.J.1
Lomas, M.W.2
Muller-Karger, F.3
-
45
-
-
85051839324
-
Non-random assembly of bacterioplankton communities in the subtropical north pacific ocean
-
Eiler, A., Hayakawa, D. H.&Rappé, M. S. Non-random assembly of bacterioplankton communities in the subtropical north pacific ocean. Front. Microbiol. 43, 129-156 (2011).
-
(2011)
Front. Microbiol.
, vol.43
, pp. 129-156
-
-
Eiler, A.1
Hayakawa, D.H.2
Rappé, M.S.3
-
46
-
-
84888200521
-
Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight
-
Chow, C.-E. T. et al. Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight. ISME J. 7, 2259-2273 (2013).
-
(2013)
ISME J.
, vol.7
, pp. 2259-2273
-
-
Chow, C.-E.T.1
-
47
-
-
0027044652
-
Circulation over the santa monica-san pedro basin and shelf
-
Hickey, B. M. Circulation over the Santa Monica-San Pedro Basin and Shelf. Prog. Oceanogr. 30, 37-115 (1992).
-
(1992)
Prog. Oceanogr.
, vol.30
, pp. 37-115
-
-
Hickey, B.M.1
-
48
-
-
33748353399
-
Annually reoccurring bacterial communities are predictable from ocean conditions
-
Fuhrman, J. A. et al. Annually reoccurring bacterial communities are predictable from ocean conditions. Proc. Natl Acad. Sci. USA 103, 13104-13109 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 13104-13109
-
-
Fuhrman, J.A.1
-
49
-
-
54549105879
-
Community structure of marine bacterioplankton: Patterns, networks, and relationships to function
-
Fuhrman, J. A.&Steele, J. A. Community structure of marine bacterioplankton: patterns, networks, and relationships to function. Aquat. Microb. Ecol. 53, 69-81 (2008).
-
(2008)
Aquat. Microb. Ecol.
, vol.53
, pp. 69-81
-
-
Fuhrman, J.A.1
Steele, J.A.2
-
50
-
-
84884828037
-
Beta diversity of marine bacteria depends on temporal scale
-
Hatosy, S. M. et al. Beta diversity of marine bacteria depends on temporal scale. Ecology 94, 1898-1904 (2013).
-
(2013)
Ecology
, vol.94
, pp. 1898-1904
-
-
Hatosy, S.M.1
-
51
-
-
24644448794
-
Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere
-
Filée, J., Tetart, F., Suttle, C. A.&Krisch, H. M. Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere. Proc. Natl Acad. Sci. USA 102, 12471-12476 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 12471-12476
-
-
Filée, J.1
Tetart, F.2
Suttle, C.A.3
Krisch, H.M.4
-
52
-
-
84864383742
-
Seasonality and monthly dynamics of marine myovirus communities
-
Chow, C.-E. T.&Fuhrman, J. A. Seasonality and monthly dynamics of marine myovirus communities. Environ. Microbiol. 14, 2171-2183 (2012).
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 2171-2183
-
-
Chow, C.-E.T.1
Fuhrman, J.A.2
-
53
-
-
84899409844
-
Top-down controls on bacterial community structure: Microbial network analysis of bacteria, T4-like viruses and protists
-
Chow, C.-E. T., Kim, D. Y., Sachdeva, R., Caron, D. A.&Fuhrman, J. A. Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists. ISME J. 8, 816-829 (2014).
-
(2014)
ISME J.
, vol.8
, pp. 816-829
-
-
Chow, C.-E.T.1
Kim, D.Y.2
Sachdeva, R.3
Caron, D.A.4
Fuhrman, J.A.5
-
54
-
-
84880922997
-
Short-term observations of marine bacterial and viral communities: Patterns, connections and resilience
-
Needham, D. M. et al. Short-term observations of marine bacterial and viral communities: patterns, connections and resilience. ISME J. 7, 1274-1285 (2013).
-
(2013)
ISME J.
, vol.7
, pp. 1274-1285
-
-
Needham, D.M.1
-
55
-
-
77953553271
-
Population ecology of nitrifying archaea and bacteria in the Southern California Bight
-
Beman, J. M., Sachdeva, R.&Fuhrman, J. A. Population ecology of nitrifying archaea and bacteria in the Southern California Bight. Environ. Microbiol. 12, 1282-1292 (2010).
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 1282-1292
-
-
Beman, J.M.1
Sachdeva, R.2
Fuhrman, J.A.3
-
56
-
-
84923546308
-
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years
-
Cram, J. A. et al. Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years. ISME J. http://dx.doi.org/10.1038/ismej.2014.153 (2014).
-
(2014)
ISME J.
-
-
Cram, J.A.1
-
57
-
-
33744923681
-
Remarkable heterogeneity in meso-and bathypelagic bacterioplankton assemblage composition
-
Hewson, I., Steele, J. A., Capone, D. G.&Fuhrman, J. A. Remarkable heterogeneity in meso-and bathypelagic bacterioplankton assemblage composition. Limnol. Oceanogr. 51, 1274-1283 (2006).
-
(2006)
Limnol. Oceanogr.
, vol.51
, pp. 1274-1283
-
-
Hewson, I.1
Steele, J.A.2
Capone, D.G.3
Fuhrman, J.A.4
-
58
-
-
79959607043
-
Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California
-
Beman, J. M., Steele, J. A.&Fuhrman, J. A. Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California. ISME J. 5, 1077-1085 (2011).
-
(2011)
ISME J.
, vol.5
, pp. 1077-1085
-
-
Beman, J.M.1
Steele, J.A.2
Fuhrman, J.A.3
-
59
-
-
0000591071
-
Tidal fronts on the shelf seas around the British Isles
-
Pingree, R. D.&Griffiths, D. K. Tidal fronts on the shelf seas around the British Isles. J. Geophys. Res. 83, 4615-4622 (1978).
-
(1978)
J. Geophys. Res.
, vol.83
, pp. 4615-4622
-
-
Pingree, R.D.1
Griffiths, D.K.2
-
60
-
-
10644222759
-
Long-term oceanographic and ecological research in the Western English Channel
-
Southward, A. J. et al. Long-term oceanographic and ecological research in the Western English Channel. Adv. Mar. Biol. 47, 1-105 (2005).
-
(2005)
Adv. Mar. Biol.
, vol.47
, pp. 1-105
-
-
Southward, A.J.1
-
61
-
-
84855958621
-
Defining seasonal marine microbial community dynamics
-
Gilbert, J. A. et al. Defining seasonal marine microbial community dynamics. ISME J. 6, 298-308 (2012).
-
(2012)
ISME J.
, vol.6
, pp. 298-308
-
-
Gilbert, J.A.1
-
62
-
-
71249091315
-
The seasonal structure of microbial communities in the Western English Channel
-
Gilbert, J. A. et al. The seasonal structure of microbial communities in the Western English Channel. Environ. Microbiol. 11, 3132-3139 (2009).
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 3132-3139
-
-
Gilbert, J.A.1
-
63
-
-
0032737146
-
The Mediterranean climate as a template for Mediterranean marine ecosystems: The example of the northeast Spanish littoral
-
Duarte, C. M., Agustí, S., Kennedy, H.&Vaqué, D. The Mediterranean climate as a template for Mediterranean marine ecosystems: the example of the northeast Spanish littoral. Prog. Oceanogr. 44, 245-270 (1999).
-
(1999)
Prog. Oceanogr.
, vol.44
, pp. 245-270
-
-
Duarte, C.M.1
Agustí, S.2
Kennedy, H.3
Vaqué, D.4
-
64
-
-
25844486961
-
Seasonal variability of the mixed layer depth in the Mediterranean Sea as derived from in situ profiles
-
D'Ortenzio, F. et al. Seasonal variability of the mixed layer depth in the Mediterranean Sea as derived from in situ profiles. Geophys. Res. Lett. 32, 1-4 (2005).
-
(2005)
Geophys. Res. Lett.
, vol.32
, pp. 1-4
-
-
D'ortenzio, F.1
-
65
-
-
0037435042
-
Seasonal changes in the taxonomic composition of bacterioplankton in a coastal oligotrophic system
-
Schauer, M., Balagué, V., Pedrós-Alió, C.&Massana, R. Seasonal changes in the taxonomic composition of bacterioplankton in a coastal oligotrophic system. Aquat. Microb. Ecol. 31, 163-174 (2003).
-
(2003)
Aquat. Microb. Ecol.
, vol.31
, pp. 163-174
-
-
Schauer, M.1
Balagué, V.2
Pedrós-Alió, C.3
Massana, R.4
-
66
-
-
33947245554
-
Seasonality in bacterial diversity in north-west Mediterranean coastal waters: Assessment through clone libraries, fingerprinting and FISH
-
Alonso-Sáez, L. et al. Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH. FEMS Microbiol. Ecol. 60, 98-112 (2007).
-
(2007)
FEMS Microbiol. Ecol.
, vol.60
, pp. 98-112
-
-
Alonso-Sáez, L.1
-
67
-
-
77958043614
-
Inter-annual recurrence of archaeal assemblages in the coastal NW Mediterranean Sea (Blanes Bay Microbial Observatory)
-
Galand, P. E., Gutiérrez-Provecho, C., Massana, R., Gasol, J. M.&Casamayor, E. O. Inter-annual recurrence of archaeal assemblages in the coastal NW Mediterranean Sea (Blanes Bay Microbial Observatory). Limnol. Oceanogr. 55, 2117-2125 (2010).
-
(2010)
Limnol. Oceanogr.
, vol.55
, pp. 2117-2125
-
-
Galand, P.E.1
Gutiérrez-Provecho, C.2
Massana, R.3
Gasol, J.M.4
Casamayor, E.O.5
-
68
-
-
84876045220
-
Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters
-
Hugoni, M. et al. Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters. Proc. Natl Acad. Sci. USA 110, 6004-6009 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 6004-6009
-
-
Hugoni, M.1
-
69
-
-
79959842126
-
Genomic island variability facilitates Prochlorococcus-virus coexistence
-
Avrani, S., Wurtzel, O., Sharon, I., Sorek, R.&Lindell, D. Genomic island variability facilitates Prochlorococcus-virus coexistence. Nature 474, 604-608 (2011).
-
(2011)
Nature
, vol.474
, pp. 604-608
-
-
Avrani, S.1
Wurtzel, O.2
Sharon, I.3
Sorek, R.4
Lindell, D.5
-
70
-
-
84858690397
-
Rapid diversification of coevolving marine Synechococcus and a virus
-
Marston, M. F. et al. Rapid diversification of coevolving marine Synechococcus and a virus. Proc. Natl Acad. Sci. USA 109, 4544-4549 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 4544-4549
-
-
Marston, M.F.1
-
71
-
-
0041375471
-
Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
-
Sullivan, M. B., Waterbury, J. B.&Chisholm, S. W. Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature 424, 1047-1052 (2003).
-
(2003)
Nature
, vol.424
, pp. 1047-1052
-
-
Sullivan, M.B.1
Waterbury, J.B.2
Chisholm, S.W.3
-
72
-
-
84860511582
-
The Black Queen Hypothesis: Evolution of dependencies through adaptive gene loss
-
Morris, J. J., Lenski, R. E.&Zinser, E. R. The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss. mBio 3, e00036-12 (2012).
-
(2012)
MBio
, vol.3
, pp. e00036-12
-
-
Morris, J.J.1
Lenski, R.E.2
Zinser, E.R.3
-
73
-
-
80052318679
-
Dependence of the cyanobacterium Prochlorococcus on hydrogen peroxide scavenging microbes for growth at the ocean's surface
-
Morris, J. J., Johnson, Z. I., Szul, M. J., Keller, M.&Zinser, E. R. Dependence of the cyanobacterium Prochlorococcus on hydrogen peroxide scavenging microbes for growth at the ocean's surface. PLoS ONE 6, e16805 (2011).
-
(2011)
PLoS ONE
, vol.6
-
-
Morris, J.J.1
Johnson, Z.I.2
Szul, M.J.3
Keller, M.4
Zinser, E.R.5
-
74
-
-
84908066744
-
Coexistence of evolving bacteria stabilized by a shared black queen function
-
Morris, J. J., Papoulis, S. E.&Lenski, R. E. Coexistence of evolving bacteria stabilized by a shared black queen function. Evolution 68, 2960-2971 (2014).
-
(2014)
Evolution
, vol.68
, pp. 2960-2971
-
-
Morris, J.J.1
Papoulis, S.E.2
Lenski, R.E.3
-
75
-
-
84884251320
-
Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform
-
Kozich, J. J., Westcott, S. L., Baxter, N. T., Highlander, S. K.&Schloss, P. D. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Appl. Environ. Microbiol. 79, 5112-5120 (2013).
-
(2013)
Appl. Environ. Microbiol.
, vol.79
, pp. 5112-5120
-
-
Kozich, J.J.1
Westcott, S.L.2
Baxter, N.T.3
Highlander, S.K.4
Schloss, P.D.5
-
76
-
-
79961081161
-
Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads
-
Bartram, A. K., Lynch, M. D. J., Stearns, J. C., Moreno-Hagelsieb, G.&Neufeld, J. D. Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads. Appl. Environ. Microbiol. 77, 3846-3852 (2011).
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 3846-3852
-
-
Bartram, A.K.1
Lynch, M.D.J.2
Stearns, J.C.3
Moreno-Hagelsieb, G.4
Neufeld, J.D.5
-
77
-
-
66149150877
-
Microbial community structure and its functional implications
-
Fuhrman, J. A. Microbial community structure and its functional implications. Nature 459, 193-199 (2009).
-
(2009)
Nature
, vol.459
, pp. 193-199
-
-
Fuhrman, J.A.1
-
78
-
-
84876026396
-
Microbial syntrophy: Interaction for the common good
-
Morris, B. E. L., Henneberger, R., Huber, H.&Moissl-Eichinger, C. Microbial syntrophy: interaction for the common good. FEMS Microbiol. Rev. 37, 384-406 (2013).
-
(2013)
FEMS Microbiol. Rev.
, vol.37
, pp. 384-406
-
-
Morris, B.E.L.1
Henneberger, R.2
Huber, H.3
Moissl-Eichinger, C.4
-
79
-
-
43249101636
-
Long-term observation of a pollination network: Fluctuation in species and interactions, relative invariance of network structure and implications for estimates of specialization
-
Petanidou, T., Kallimanis, A. S., Tzanopoulos, J., Sgardelis, S. P.&Pantis, J. D. Long-term observation of a pollination network: fluctuation in species and interactions, relative invariance of network structure and implications for estimates of specialization. Ecol. Lett. 11, 564-575 (2008).
-
(2008)
Ecol. Lett.
, vol.11
, pp. 564-575
-
-
Petanidou, T.1
Kallimanis, A.S.2
Tzanopoulos, J.3
Sgardelis, S.P.4
Pantis, J.D.5
-
80
-
-
84876473237
-
A decade of seasonal dynamics and co-occurrences within freshwater bacterioplankton communities from eutrophic Lake Mendota, Wisconsin, USA
-
Kara, E. L., Hanson, P. C., Hu, Y. H., Winslow, L.&McMahon, K. D. A decade of seasonal dynamics and co-occurrences within freshwater bacterioplankton communities from eutrophic Lake Mendota, Wisconsin, USA. ISME J. 7, 680-684 (2013).
-
(2013)
ISME J.
, vol.7
, pp. 680-684
-
-
Kara, E.L.1
Hanson, P.C.2
Hu, Y.H.3
Winslow, L.4
McMahon, K.D.5
-
81
-
-
84855949949
-
Using network analysis to explore co-occurrence patterns in soil microbial communities
-
Barberán, A., Bates, S. T., Casamayor, E. O.&Fierer, N. Using network analysis to explore co-occurrence patterns in soil microbial communities. ISME J. 6, 343-351 (2012).
-
(2012)
ISME J.
, vol.6
, pp. 343-351
-
-
Barberán, A.1
Bates, S.T.2
Casamayor, E.O.3
Fierer, N.4
-
82
-
-
84939255787
-
Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters
-
De Menezes, A. B. et al. Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters. Environ. Microbiol. http://dx.doi.org/10.1111/1462-2920.12559 (2014).
-
(2014)
Environ. Microbiol.
-
-
De Menezes, A.B.1
-
83
-
-
84923545083
-
Network topology reveals high connectance levels and few key microbial genera within soils
-
Lupatini, M. et al. Network topology reveals high connectance levels and few key microbial genera within soils. Front. Environ. Sci. 2, 10 (2014).
-
(2014)
Front. Environ. Sci.
, vol.2
, pp. 10
-
-
Lupatini, M.1
-
84
-
-
33749824905
-
Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors
-
Ruan, Q. et al. Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors. Bioinformatics 22, 2532-2538 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 2532-2538
-
-
Ruan, Q.1
-
85
-
-
84870506713
-
Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates
-
Xia, L. C. et al. Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates. BMC Syst. Biol. 5 (Suppl. 2), S15 (2011).
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. S15
-
-
Xia, L.C.1
-
86
-
-
84872568885
-
Efficient statistical significance approximation for local similarity analysis of high-throughput time series data
-
Xia, L. C., Ai, D., Cram, J. A., Fuhrman, J. A.&Sun, F. Efficient statistical significance approximation for local similarity analysis of high-throughput time series data. Bioinformatics 29, 230-237 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 230-237
-
-
Xia, L.C.1
Ai, D.2
Cram, J.A.3
Fuhrman, J.A.4
Sun, F.5
-
87
-
-
84872559838
-
Expanding the boundaries of local similarity analysis
-
Durno, W. E., Hanson, N. W., Konwar, K. M.&Hallam, S. J. Expanding the boundaries of local similarity analysis. BMC Genomics 14 (Suppl. 1), S3 (2013).
-
(2013)
BMC Genomics
, vol.14
, pp. S3
-
-
Durno, W.E.1
Hanson, N.W.2
Konwar, K.M.3
Hallam, S.J.4
-
88
-
-
84863920287
-
Microbial interactions: From networks to models
-
Faust, K.&Raes, J. Microbial interactions: from networks to models. Nature Rev. Microbiol. 10, 538-550 (2012).
-
(2012)
Nature Rev. Microbiol.
, vol.10
, pp. 538-550
-
-
Faust, K.1
Raes, J.2
-
89
-
-
84953847564
-
Marine bacterial, archaeal, and protistan association networks
-
Cram, J. A., Sun, F.&Fuhrman, J. A. Marine bacterial, archaeal, and protistan association networks Encyclopedia of Metagenomics http://dx.doi.org/10.1007/978-1-4614-6418-1-721-3 (2014).
-
(2014)
Encyclopedia of Metagenomics
-
-
Cram, J.A.1
Sun, F.2
Fuhrman, J.A.3
-
90
-
-
80052061077
-
Marine bacterial, archaeal and protistan association networks reveal ecological linkages
-
Steele, J. A. et al. Marine bacterial, archaeal and protistan association networks reveal ecological linkages. ISME J. 5, 1414-1425 (2011).
-
(2011)
ISME J.
, vol.5
, pp. 1414-1425
-
-
Steele, J.A.1
-
92
-
-
33645216333
-
Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
-
Johnson, Z. I. et al. Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science 311, 1737-1740 (2006).
-
(2006)
Science
, vol.311
, pp. 1737-1740
-
-
Johnson, Z.I.1
-
93
-
-
84899559579
-
Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus
-
Kashtan, N. et al. Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science 344, 416-420 (2014).
-
(2014)
Science
, vol.344
, pp. 416-420
-
-
Kashtan, N.1
-
94
-
-
79955787125
-
Single-cell genomics reveals organismal interactions in uncultivated marine protists
-
Yoon, H. S. et al. Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science 332, 714-717 (2011).
-
(2011)
Science
, vol.332
, pp. 714-717
-
-
Yoon, H.S.1
-
95
-
-
84906254581
-
Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
-
Deng, L. et al. Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature 513, 242-245 (2014).
-
(2014)
Nature
, vol.513
, pp. 242-245
-
-
Deng, L.1
-
96
-
-
79954563903
-
What are "ecogenomic sensors"? A review and thoughts for the future
-
Scholin, C. A. What are "ecogenomic sensors"? A review and thoughts for the future. Ocean Sci. 6, 51-60 (2010).
-
(2010)
Ocean Sci.
, vol.6
, pp. 51-60
-
-
Scholin, C.A.1
-
97
-
-
84904096501
-
Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages
-
Ottesen, E. A. et al. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages. Science 345, 207-212 (2014).
-
(2014)
Science
, vol.345
, pp. 207-212
-
-
Ottesen, E.A.1
-
98
-
-
84873455505
-
Pattern and synchrony of gene expression among sympatric marine microbial populations
-
Ottesen, E. A. et al. Pattern and synchrony of gene expression among sympatric marine microbial populations. Proc. Natl Acad. Sci. USA 110, E488-E497 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. E488-E497
-
-
Ottesen, E.A.1
-
99
-
-
84857111331
-
Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation
-
Robidart, J. C. et al. Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation. ISME J. 6, 513-523 (2012).
-
(2012)
ISME J.
, vol.6
, pp. 513-523
-
-
Robidart, J.C.1
-
100
-
-
70449413844
-
Viral glycosphingolipids induce lytic infection and cell death in marine phytoplankton
-
Vardi, A. et al. Viral glycosphingolipids induce lytic infection and cell death in marine phytoplankton. Science 326, 861-865 (2009).
-
(2009)
Science
, vol.326
, pp. 861-865
-
-
Vardi, A.1
-
101
-
-
0035656732
-
Iron stress in open-ocean cyanobacteria (Synechococcus, Trichodesmium, and Crocosphaera) identification of the IdiA protein
-
Webb, E. A., Moffett, J. W.&Waterbury, J. B. Iron stress in open-ocean cyanobacteria (Synechococcus, Trichodesmium, and Crocosphaera) identification of the IdiA protein. Appl. Environ. Microbiol. 67, 5444-5452 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5444-5452
-
-
Webb, E.A.1
Moffett, J.W.2
Waterbury, J.B.3
-
102
-
-
79960788441
-
Targeted sorting of single virus-infected cells of the coccolithophore Emiliania huxleyi
-
Martínez Martínez, J., Poulton, N. J., Stepanauskas, R., Sieracki, M. E.&Wilson, W. H. Targeted sorting of single virus-infected cells of the coccolithophore Emiliania huxleyi. PLoS ONE 6, e22520 (2011).
-
(2011)
PLoS ONE
, vol.6
-
-
Martínez Martínez, J.1
Poulton, N.J.2
Stepanauskas, R.3
Sieracki, M.E.4
Wilson, W.H.5
-
103
-
-
84879678051
-
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
-
Albertsen, M. et al. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nature Biotech. 31, 533-538 (2013).
-
(2013)
Nature Biotech.
, vol.31
, pp. 533-538
-
-
Albertsen, M.1
-
104
-
-
84897492912
-
Tackling soil diversity with the assembly of large, complex metagenomes
-
Howe, A. C. et al. Tackling soil diversity with the assembly of large, complex metagenomes. Proc. Natl Acad. Sci. USA 111, 4904-4909 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 4904-4909
-
-
Howe, A.C.1
-
105
-
-
33646785416
-
Temporal and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters
-
Hewson, I., Steele, J. A., Capone, D. G.&Fuhrman, J. A. Temporal and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters. Mar. Ecol. Prog. Ser. 311, 67-77 (2006).
-
(2006)
Mar. Ecol. Prog. Ser.
, vol.311
, pp. 67-77
-
-
Hewson, I.1
Steele, J.A.2
Capone, D.G.3
Fuhrman, J.A.4
-
106
-
-
84884491848
-
Small-scale temporal and spatial variations in protistan community composition at the San Pedro Ocean Time-series station off the coast of southern California
-
Lie, A. A. Y., Kim, D. Y., Schnetzer, A.&Caron, D. A. Small-scale temporal and spatial variations in protistan community composition at the San Pedro Ocean Time-series station off the coast of southern California. Aquat. Microb. Ecol. 70, 93-110 (2013).
-
(2013)
Aquat. Microb. Ecol.
, vol.70
, pp. 93-110
-
-
Lie, A.A.Y.1
Kim, D.Y.2
Schnetzer, A.3
Caron, D.A.4
-
107
-
-
35348933745
-
Multivariate analyses in microbial ecology
-
Ramette, A. Multivariate analyses in microbial ecology. FEMS Microbiol. Ecol. 62, 142-160 (2007).
-
(2007)
FEMS Microbiol. Ecol.
, vol.62
, pp. 142-160
-
-
Ramette, A.1
-
108
-
-
33847692434
-
Bacterial community dynamics during the winter-spring transition in the North Sea
-
Sapp, M., Wichels, A., Wiltshire, K. H.&Gerdts, G. Bacterial community dynamics during the winter-spring transition in the North Sea. FEMS Microbiol. Ecol. 59, 622-637 (2007).
-
(2007)
FEMS Microbiol. Ecol.
, vol.59
, pp. 622-637
-
-
Sapp, M.1
Wichels, A.2
Wiltshire, K.H.3
Gerdts, G.4
-
109
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey, J. D.&Tibshirani, R. Statistical significance for genomewide studies. Proc. Natl Acad. Sci. USA 100, 9440-9445 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
110
-
-
59849086092
-
The bacterial species challenge: Making sense of genetic and ecological diversity
-
Fraser, C., Alm, E. J., Polz, M. F., Spratt, B. G.&Hanage, W. P. The bacterial species challenge: making sense of genetic and ecological diversity. Science 323, 741-746 (2009).
-
(2009)
Science
, vol.323
, pp. 741-746
-
-
Fraser, C.1
Alm, E.J.2
Polz, M.F.3
Spratt, B.G.4
Hanage, W.P.5
-
111
-
-
34247884459
-
A systematics for discovering the fundamental units of bacterial diversity
-
Cohan, F. M.&Perry, E. B. A systematics for discovering the fundamental units of bacterial diversity. Curr. Biol. 17, R373-R386 (2007).
-
(2007)
Curr. Biol.
, vol.17
, pp. R373-R386
-
-
Cohan, F.M.1
Perry, E.B.2
-
112
-
-
84899979623
-
Ordering microbial diversity into ecologically and genetically cohesive units
-
Shapiro, B. J.&Polz, M. F. Ordering microbial diversity into ecologically and genetically cohesive units. Trends Microbiol. 22, 235-247 (2014).
-
(2014)
Trends Microbiol.
, vol.22
, pp. 235-247
-
-
Shapiro, B.J.1
Polz, M.F.2
-
113
-
-
43849089834
-
Microbial diversity and the genetic nature of microbial species
-
Achtman, M.&Wagner, M. Microbial diversity and the genetic nature of microbial species. Nature Rev. Microbiol. 6, 431-440 (2008).
-
(2008)
Nature Rev. Microbiol.
, vol.6
, pp. 431-440
-
-
Achtman, M.1
Wagner, M.2
-
114
-
-
84861847839
-
Population genomics: How bacterial species form and why they don't exist
-
Doolittle, W. F. Population genomics: how bacterial species form and why they don't exist. Curr. Biol. 22, R451-R453 (2012).
-
(2012)
Curr. Biol.
, vol.22
, pp. R451-R453
-
-
Doolittle, W.F.1
-
115
-
-
33751258603
-
The bacterial species dilemma and the genomic-phylogenetic species concept
-
Staley, J. T. The bacterial species dilemma and the genomic-phylogenetic species concept. Philos. Trans. R. Soc. B 361, 1899-1909 (2006).
-
(2006)
Philos. Trans. R. Soc. B
, vol.361
, pp. 1899-1909
-
-
Staley, J.T.1
-
116
-
-
44449178480
-
Resource partitioning and sympatric differentiation among closely related bacterioplankton
-
Hunt, D. E. et al. Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320, 1081-1085 (2008).
-
(2008)
Science
, vol.320
, pp. 1081-1085
-
-
Hunt, D.E.1
-
117
-
-
84889649570
-
Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data
-
Eren, A. M. et al. Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data. Methods Ecol. Evol. 4, 1111-1119 (2013).
-
(2013)
Methods Ecol. Evol.
, vol.4
, pp. 1111-1119
-
-
Eren, A.M.1
-
118
-
-
84923545661
-
Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution
-
Tikhonov, M., Leach, R. W.&Wingreen, N. S. Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution. ISME J. 9, 68-80 (2015).
-
(2015)
ISME J.
, vol.9
, pp. 68-80
-
-
Tikhonov, M.1
Leach, R.W.2
Wingreen, N.S.3
-
119
-
-
77649128177
-
The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity
-
Schwalbach, M. S., Tripp, H. J., Steindler, L., Smith, D. P.&Giovannoni, S. J. The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity. Environ. Microbiol. 12, 490-500 (2010).
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 490-500
-
-
Schwalbach, M.S.1
Tripp, H.J.2
Steindler, L.3
Smith, D.P.4
Giovannoni, S.J.5
-
120
-
-
38849200974
-
Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data
-
Wilhelm, L. J., Tripp, H. J., Givan, S. A., Smith, D. P.&Giovannoni, S. J. Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data. Biol. Direct 2, 27 (2007).
-
(2007)
Biol. Direct
, vol.2
, pp. 27
-
-
Wilhelm, L.J.1
Tripp, H.J.2
Givan, S.A.3
Smith, D.P.4
Giovannoni, S.J.5
-
121
-
-
0022265348
-
Marine phytoplankton distributions measured using shipboard flow cytometry
-
Olson, R. J., Vaulot, D.&Chisolm, S. W. Marine phytoplankton distributions measured using shipboard flow cytometry. Deep Sea Res. 32, 1273-1280 (1985).
-
(1985)
Deep Sea Res.
, vol.32
, pp. 1273-1280
-
-
Olson, R.J.1
Vaulot, D.2
Chisolm, S.W.3
-
122
-
-
0024265562
-
A novel free-living prochlorophyte abundant in the oceanic euphotic zone
-
Chisolm, S. W. et al. A novel free-living prochlorophyte abundant in the oceanic euphotic zone. Nature 334, 340-343 (1988).
-
(1988)
Nature
, vol.334
, pp. 340-343
-
-
Chisolm, S.W.1
-
123
-
-
84857866290
-
Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR
-
Paerl, R. W., Turk, K. A., Beinart, R. A., Chavez, F. P.&Zehr, J. P. Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR. Environ. Microbiol. 14, 580-593 (2012).
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 580-593
-
-
Paerl, R.W.1
Turk, K.A.2
Beinart, R.A.3
Chavez, F.P.4
Zehr, J.P.5
-
124
-
-
84875781345
-
Diversity and distribution of marine Synechococcus: Multiple gene phylogenies for consensus classification and development of qPCR assays for sensitive measurement of clades in the ocean
-
Ahlgren, N. A.&Rocap, G. Diversity and distribution of marine Synechococcus: multiple gene phylogenies for consensus classification and development of qPCR assays for sensitive measurement of clades in the ocean. Front. Microbiol. 3, 213 (2012).
-
(2012)
Front. Microbiol.
, vol.3
, pp. 213
-
-
Ahlgren, N.A.1
Rocap, G.2
-
125
-
-
68649098735
-
Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site
-
Tai, V.&Palenik, B. Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site. ISME J. 3, 903-915 (2009).
-
(2009)
ISME J.
, vol.3
, pp. 903-915
-
-
Tai, V.1
Palenik, B.2
-
126
-
-
79952996063
-
Modeling diverse communities of marine microbes
-
Follows, M. J.&Dutkiewicz, S. Modeling diverse communities of marine microbes. Ann. Rev. Mar. Sci. 3, 427-451 (2011).
-
(2011)
Ann. Rev. Mar. Sci.
, vol.3
, pp. 427-451
-
-
Follows, M.J.1
Dutkiewicz, S.2
-
127
-
-
0000449745
-
-
(eds Charpy, L.&Larkum, A. W. D.) Institut Océanographique
-
Partensky, F., Blanchot, J.&Vaulot, D. in Marine Cyanobacteria Vol. 19 (eds Charpy, L.&Larkum, A. W. D.) 457-475 (Institut Océanographique, 1999).
-
(1999)
Marine Cyanobacteria
, vol.19
, pp. 457-475
-
-
Partensky, F.1
Blanchot, J.2
Vaulot, D.3
-
128
-
-
0347604366
-
The interplay between upwelling and deep convective mixing in determining the seasonal phytoplankton dynamics in the Gulf of Aqaba: Evidence from SeaWiFS and MODIS
-
Labiosa, R. G., Arrigo, K. R., Genin, A., Monismith, S. G.&van Dijken, G. The interplay between upwelling and deep convective mixing in determining the seasonal phytoplankton dynamics in the Gulf of Aqaba: evidence from SeaWiFS and MODIS. Limnol. Oceanogr. 48, 2355-2368 (2003).
-
(2003)
Limnol. Oceanogr.
, vol.48
, pp. 2355-2368
-
-
Labiosa, R.G.1
Arrigo, K.R.2
Genin, A.3
Monismith, S.G.4
Van Dijken, G.5
-
129
-
-
0028982376
-
Ultraphytoplankton succession is triggered by deep winter mixing in the Gulf of Aqaba (Eilat), Red Sea
-
Lindell, D.&Post, A. F. Ultraphytoplankton succession is triggered by deep winter mixing in the Gulf of Aqaba (Eilat), Red Sea. Limnol. Oceanogr. 40, 1130-1141 (1995).
-
(1995)
Limnol. Oceanogr.
, vol.40
, pp. 1130-1141
-
-
Lindell, D.1
Post, A.F.2
-
130
-
-
33846945083
-
Seasonal dynamics of phytoplankton in the Gulf of Aqaba, Red Sea
-
Al-Najjar, T., Badran, M. I., Richter, C., Meyerhoefer, M.&Sommer, U. Seasonal dynamics of phytoplankton in the Gulf of Aqaba, Red Sea. Hydrobiologia 579, 69-83 (2006).
-
(2006)
Hydrobiologia
, vol.579
, pp. 69-83
-
-
Al-Najjar, T.1
Badran, M.I.2
Richter, C.3
Meyerhoefer, M.4
Sommer, U.5
-
131
-
-
77957000882
-
Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans
-
Malmstrom, R. R. et al. Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans. ISME J. 4, 1252-1264 (2010).
-
(2010)
ISME J.
, vol.4
, pp. 1252-1264
-
-
Malmstrom, R.R.1
-
132
-
-
0027329223
-
Resistance to co-occurring phages enables marine Synechococcus communities to coexist with cyanophages abundant in seawater
-
Waterbury, J. B.&Valois, F. W. Resistance to co-occurring phages enables marine Synechococcus communities to coexist with cyanophages abundant in seawater. Appl. Environ. Microbiol. 59, 3393-3399 (1993).
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 3393-3399
-
-
Waterbury, J.B.1
Valois, F.W.2
-
133
-
-
83155191064
-
Abundance and distribution of Synechococcus spp. and cyanophages in the Chesapeake Bay
-
Wang, K., Wommack, K. E.&Chen, F. Abundance and distribution of Synechococcus spp. and cyanophages in the Chesapeake Bay. Appl. Environ. Microbiol. 77, 7459-7468 (2011).
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 7459-7468
-
-
Wang, K.1
Wommack, K.E.2
Chen, F.3
-
134
-
-
70350439595
-
Diverse and dynamic populations of cyanobacterial podoviruses in the Chesapeake Bay unveiled through DNA polymerase gene sequences
-
Chen, F. et al. Diverse and dynamic populations of cyanobacterial podoviruses in the Chesapeake Bay unveiled through DNA polymerase gene sequences. Environ. Microbiol. 11, 2884-2892 (2009).
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 2884-2892
-
-
Chen, F.1
-
135
-
-
0043031198
-
Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal waters
-
Marston, M. F.&Sallee, J. L. Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal waters. Appl. Environ. Microbiol. 69, 4639-4647 (2003).
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 4639-4647
-
-
Marston, M.F.1
Sallee, J.L.2
-
136
-
-
84876111245
-
Diversity and temporal dynamics of Southern California coastal marine cyanophage isolates
-
Clasen, J. L. et al. Diversity and temporal dynamics of Southern California coastal marine cyanophage isolates. Aquat. Microb. Ecol. 69, 17-31 (2013).
-
(2013)
Aquat. Microb. Ecol.
, vol.69
, pp. 17-31
-
-
Clasen, J.L.1
-
137
-
-
84868622232
-
Long term seasonal dynamics of Synechococcus population structure in the Gulf of Aqaba, Northern Red Sea
-
Post, A. F. et al. Long term seasonal dynamics of Synechococcus population structure in the Gulf of Aqaba, Northern Red Sea. Front. Microbiol. 2, 131 (2011).
-
(2011)
Front. Microbiol.
, vol.2
, pp. 131
-
-
Post, A.F.1
-
138
-
-
20144389217
-
Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: Evidence for viral control of phytoplankton
-
Mühling, M. et al. Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: evidence for viral control of phytoplankton. Environ. Microbiol. 7, 499-508 (2005).
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 499-508
-
-
Mühling, M.1
-
139
-
-
84926419476
-
Host-dependent differences in abundance, composition and host range of cyanophages from the Red Sea
-
Dekel-Bird, N. P., Sabehi, G., Mosevitzky, B.&Lindell, D. Host-dependent differences in abundance, composition and host range of cyanophages from the Red Sea. Environ. Microbiol. http://dx.doi.org/10.1111/1462-2920.12569 (2014).
-
(2014)
Environ. Microbiol.
-
-
Dekel-Bird, N.P.1
Sabehi, G.2
Mosevitzky, B.3
Lindell, D.4
-
140
-
-
84872165538
-
Contrasting life strategies of viruses that infect photo-and heterotrophic bacteria, as revealed by viral tagging
-
Deng, L. et al. Contrasting life strategies of viruses that infect photo-and heterotrophic bacteria, as revealed by viral tagging. mBio 3, e00373-12 (2012).
-
(2012)
MBio
, vol.3
, pp. e00373-e00412
-
-
Deng, L.1
|