Beta diversity of marine bacteria depends on temporal scale

Ecology

Volumn 94, Issue 9, 2013, Pages 1898-1904

  Hatosy, Stephen M ^a   Martiny, Jennifer B H ^a   Sachdeva, Rohan ^b   Steele, Joshua ^b,c   Fuhrman, Jed A ^b   Martiny, Adam C ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^c CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Beta diversity; Biodiversity; Biogeography; Distance decay; Microbial ecology

Indexed keywords

BACTERIUM; BIODIVERSITY; BIOGEOGRAPHY; CONCENTRATION (COMPOSITION); MICROBIAL COMMUNITY; MICROBIAL ECOLOGY; PHOSPHATE; SILICATE; SPATIAL DISTRIBUTION; SPECIES DIVERSITY; TEMPORAL ANALYSIS; TURNOVER;

ARTICLE; BACTERIUM; BIODIVERSITY; CLASSIFICATION; MICROBIOLOGY; SEA; TIME;

BACTERIA; BIODIVERSITY; OCEANS AND SEAS; TIME FACTORS; WATER MICROBIOLOGY;

EID: 84884828037     PISSN: 00129658     EISSN: None     Source Type: Journal    
DOI: 10.1890/12-2125.1     Document Type: Article

References (28)

1. Anderson, M. J., et al. 2011. Navigating the multiple meanings of beta diversity: a roadmap for the practicing ecologist. Ecology Letters 14:19-28.
2. Canavero, A., M. Arim, and A. Brazeiro. 2009. Geographic variations of seasonality and coexistence in communities: The role of diversity and climate. Austral Ecology 34:741-750.
3. Cloern, J. E., and F. H. Nichols. 1985. Time scales and mechanisms of estuarine variability, a synthesis from studies of San Francisco Bay. Hydrobiologia 129:229-237.
4. Condit, R., et al. 2002. Beta-diversity in tropical forest trees. Science 295:666-669. (Pubitemid 34111822)
5. Crump, B. C., B. J. Peterson, P. A. Raymond, R. M. W. Amon, A. Rinehart, J. W. McClelland, and R. M. Holmes. 2009. Circumpolar synchrony in big river bacterioplankton. Proceedings of the National Academy of Sciences USA 106:21208-21212.
6. Fuhrman, J., I. Hewson, M. Schwalbach, J. Steele, M. Brown, and S. Naeem. 2006. Annually reoccurring bacterial communities are predictable from ocean conditions. Proceedings of the National Academy of Sciences USA 103:13104-13109. (Pubitemid 44338923)
7. Gilbert, J. A., et al. 2012. Defining seasonal marine microbial community dynamics. ISME Journal 6:298-308.
8. Goslee, S. C., and D. L. Urban. 2007. The ecodist package for dissimilarity-based analysis of ecological data. Journal of Statistical Software 22:1-19.
9. Hanson, C. A., J. A. Fuhrman, M. C. Horner-Devine, and J. B. Martiny. 2012. Beyond biogeographic patterns: processes shaping the microbial landscape. Nature Reviews Microbiology 10:497-506.
10. Harte, J., and A. Kinzig. 1997. On the implications of speciesarea relationships for endemism, spatial turnover, and food web patterns. Oikos 80:417-427. (Pubitemid 28029055)
11. Hubbell, S. P. 2001. The unified neutral theory of biodiversity and biogeography. Princeton University Press, Princeton, New Jersey, USA.
12. Jones, S. E., T. A. Cadkin, R. J. Newton, and K. D. McMahon. 2012. Spatial and temporal scales of aquatic bacterial beta diversity. Frontiers in Microbiology 3:318. http://dx.doi.org/10.3389/fmicb.2012.00318
13. Kara, E., and A. Shade. 2009. Temporal dynamics of South End tidal creek (Sapelo Island, Georgia) bacterial communities. Applied Environmental Microbiology 75:1058-1064.
14. Kent, A. D., A. C. Yannarell, J. A. Rusak, E. W. Triplett, and K. D. McMahon. 2007. Synchrony in aquatic microbial community dynamics. ISME Journal 1:38-47. (Pubitemid 46717130)
15. Korhonen, J. J., J. Soininen, and H. Hillebrand. 2010. A quantitative analysis of temporal turnover in aquatic species assemblages across ecosystems. Ecology 91:508-517.
16. Magurran, A. E., and P. A. Henderson. 2010. Temporal turnover and the maintenance of diversity in ecological assemblages. Philosophical Transactions of the Royal Society B 365:3611-3620.
17. Martiny, J. B. H., J. A. Eisen, K. Penn, S. D. Allison, and M. C. Horner-Devine. 2011. Drivers of bacterial b-diversity depend on spatial scale. Proceedings of the National Academy of Sciences USA 108:7850-7854.
18. Nekola, J., and P. White. 1999. The distance decay of similarity in biogeography and ecology. Journal of Biogeography 26: 867-878. (Pubitemid 30030997)
19. Oksanen, J., F. G. Blanchet, R. Kindt, P. Legendre, P. R. Minchin, R. B. O'Hara, G. L. Simpson, P. Solymos, M. H. H. Stevens, and H. Wagner. 2012. vegan: Community Ecology Package. R package version 2.0-3. R Foundation for Statistical Computing, Vienna, Austria. http://CRAN. R-project.org/packagevegan
20. Paradis, E., J. Claude, and K. Strimmer. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20:289-290. (Pubitemid 38195693)
21. Preston, F. 1960. Time and space and the variation of species. Ecology 41:611-627.
22. Ramette, A., and J. M. Tiedje. 2007. Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem. Proceedings of the National Academy of Sciences USA 104:2761-2766. (Pubitemid 46327953)
23. Shade, A., A. D. Kent, S. E. Jones, R. J. Newton, E. W. Triplett, and K. D. McMahon. 2007. Interannual dynamics and phenology of bacterial communities in a eutrophic lake. Limnology and Oceanography 52:487-494. (Pubitemid 46972287)
24. Sogin, M., H. Morrison, J. Huber, D. Welch, S. Huse, P. Neal, J. Arrieta, and G. Herndl. 2006. Microbial diversity in the deep sea and the underexplored "rare biosphere". Proceedings of the National Academy of Sciences USA 103:12115-12120. (Pubitemid 44215820)
25. Soininen, J. 2010. Species turnover along abiotic and biotic gradients: patterns in space equal patterns in time? BioScience 60:433-439.
26. Tsujino, M., M. Hori, T. Okuda, M. Nakaoka, T. Yamamoto, and T. Noda. 2009. Distance decay of community dynamics in rocky intertidal sessile assemblages evaluated by transition matrix models. Population Ecology 52:171-180.
27. Warnes, G. R., et al. 2011. gplots: Various R programming tools for plotting data. R package version 2.10.1. R Foundation for Statistical Computing, Vienna, Austria. http://CRAN.R-project.org/packagegplots
28. Wuertz, D., and Y. Chalabi. 2012. timeSeries: Rmetrics. Financial time series objects. R package version 2160.95. R Foundation for Statistical Computing, Vienna, Austria. http://CRAN.R-project.org/packagetimeSeries