메뉴 건너뛰기




Volumn 9, Issue 3, 2015, Pages 563-580

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOPLANKTON; COMMUNITY STRUCTURE; EUPHOTIC ZONE; SEAFLOOR; SEASONAL VARIATION; SPATIOTEMPORAL ANALYSIS; WATER COLUMN; WATER DEPTH;

EID: 84923546308     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2014.153     Document Type: Article
Times cited : (152)

References (111)
  • 1
    • 78651277082 scopus 로고    scopus 로고
    • Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing
    • Agogué H, Lamy D, Neal PR, Sogin ML, Herndl GJ. (2011). Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Mol Ecol 20: 258-274.
    • (2011) Mol Ecol , vol.20 , pp. 258-274
    • Agogué, H.1    Lamy, D.2    Neal, P.R.3    Sogin, M.L.4    Herndl, G.J.5
  • 2
    • 33947245554 scopus 로고    scopus 로고
    • Seasonality in bacterial diversity in north-west Mediterranean coastal waters: Assessment through clone libraries, fingerprinting and FISH
    • Alonso-Sáez L, Balagué V, Sà EL, Sánchez O, González JM, Pinhassi J et al. (2007). Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH. FEMS Microbiol Ecol 60: 98-112.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 98-112
    • Alonso-Sáez, L.1    Balagué, V.2    Sà, E.L.3    Sánchez, O.4    González, J.M.5    Pinhassi, J.6
  • 3
    • 0027331706 scopus 로고
    • Biodiversity of the Pelagic Ocean
    • Angel MV. (1993). Biodiversity of the Pelagic Ocean. Conserv Biol 7: 760-772.
    • (1993) Conserv Biol , vol.7 , pp. 760-772
    • Angel, M.V.1
  • 4
    • 0035384654 scopus 로고    scopus 로고
    • Mutualistic relationships between phytoplankton and bacteria caused by carbon excretion from phytoplankton
    • Aota Y, Nakajima H. (2001). Mutualistic relationships between phytoplankton and bacteria caused by carbon excretion from phytoplankton. Ecol Res 16: 289-299.
    • (2001) Ecol Res , vol.16 , pp. 289-299
    • Aota, Y.1    Nakajima, H.2
  • 6
    • 0033556348 scopus 로고    scopus 로고
    • Phytoplankton community structure and the drawdown of nutrients and CO2 in the Southern Ocean
    • Arrigo KR, Robinson DH, Worthen DL, Dunbar RB, DiTullio GR, VanWoert M et al. (1999). Phytoplankton community structure and the drawdown of nutrients and CO2 in the Southern Ocean. Science 283: 365-367.
    • (1999) Science , vol.283 , pp. 365-367
    • Arrigo, K.R.1    Robinson, D.H.2    Worthen, D.L.3    Dunbar, R.B.4    Ditullio, G.R.5    Vanwoert, M.6
  • 7
    • 0032076192 scopus 로고    scopus 로고
    • Microbial control of oceanic carbon flux: The plot thickens
    • Azam F. (1998). Microbial control of oceanic carbon flux: the plot thickens. Science 280: 694-696.
    • (1998) Science , vol.280 , pp. 694-696
    • Azam, F.1
  • 8
    • 0001834798 scopus 로고
    • Midwater fishes in the eastern North Atlantic-I. Vertical distribution and associated biology in 301N, 231W, with developmental notes on certain myctophids
    • Badcock J, Merrett NR. (1976). Midwater fishes in the eastern North Atlantic-I. Vertical distribution and associated biology in 301N, 231W, with developmental notes on certain myctophids. Prog Oceanogr 7: 3-58.
    • (1976) Prog Oceanogr , vol.7 , pp. 3-58
    • Badcock, J.1    Merrett, N.R.2
  • 10
    • 84886720409 scopus 로고    scopus 로고
    • Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean
    • Beman JM, Leilei Shih J, Popp BN. (2013). Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean. ISME J 7: 2192-2205.
    • (2013) ISME J , vol.7 , pp. 2192-2205
    • Beman, J.M.1    Leilei Shih, J.2    Popp, B.N.3
  • 11
    • 77953553271 scopus 로고    scopus 로고
    • Population ecology of nitrifying Archaea and Bacteria in the Southern California Bight
    • Beman JM, Sachdeva R, Fuhrman JA. (2010). Population ecology of nitrifying Archaea and Bacteria in the Southern California Bight. Environ Microbiol 12: 1282-1292.
    • (2010) Environ Microbiol , vol.12 , pp. 1282-1292
    • Beman, J.M.1    Sachdeva, R.2    Fuhrman, J.A.3
  • 12
    • 0026088081 scopus 로고
    • The flushing of two deep-sea basins, Southern California Borderland
    • Berelson WM. (1991). The flushing of two deep-sea basins, Southern California Borderland. Limnol Oceanogr 36: 1150-1166.
    • (1991) Limnol Oceanogr , vol.36 , pp. 1150-1166
    • Berelson, W.M.1
  • 13
    • 0028585502 scopus 로고
    • The effects of temporal variability of mixed-layer depth on primary productivity around Bermuda
    • Bissett W, Meyers M, Walsh J, Mullerkarger F. (1994). The effects of temporal variability of mixed-layer depth on primary productivity around Bermuda. J Geophys Res. 99: 7539-7553.
    • (1994) J Geophys Res. , vol.99 , pp. 7539-7553
    • Bissett, W.1    Meyers, M.2    Walsh, J.3    Mullerkarger, F.4
  • 14
    • 23944517269 scopus 로고    scopus 로고
    • Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: Development and application to a time series
    • Brown MV, Schwalbach MS, Hewson I, Fuhrman JA. (2005). Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series. Environ Microbiol 7: 1466-1479.
    • (2005) Environ Microbiol , vol.7 , pp. 1466-1479
    • Brown, M.V.1    Schwalbach, M.S.2    Hewson, I.3    Fuhrman, J.A.4
  • 17
    • 60749109199 scopus 로고    scopus 로고
    • Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea
    • Carlson C, Morris R, Parsons R, Treusch A, Giovannoni S, Vergin K. (2009). Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea. ISME J 3: 283-295.
    • (2009) ISME J , vol.3 , pp. 283-295
    • Carlson, C.1    Morris, R.2    Parsons, R.3    Treusch, A.4    Giovannoni, S.5    Vergin, K.6
  • 18
    • 0002958402 scopus 로고    scopus 로고
    • Symbiosis and mixotrophy among pelagic microorganisms
    • Kirchman DL (ed.)Wiley-Liss: New York, NY
    • Caron DA. (2000). Symbiosis and mixotrophy among pelagic microorganisms. In: Microbial Ecology of the Oceans. Kirchman DL (ed.)Wiley-Liss: New York, NY, pp 495-523.
    • (2000) Microbial Ecology of the Oceans , pp. 495-523
    • Caron, D.A.1
  • 19
    • 0035984122 scopus 로고    scopus 로고
    • Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern
    • Casamayor EO, Massana R, Benlloch S, Ovreas L, Diez B, Goddard VJ et al. (2002). Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environ Microbiol 4: 338-348.
    • (2002) Environ Microbiol , vol.4 , pp. 338-348
    • Casamayor, E.O.1    Massana, R.2    Benlloch, S.3    Ovreas, L.4    Diez, B.5    Goddard, V.J.6
  • 20
    • 1642317186 scopus 로고    scopus 로고
    • Neutral theory and community ecology
    • Chave J. (2004). Neutral theory and community ecology. Ecol Lett 7: 241-253.
    • (2004) Ecol Lett , vol.7 , pp. 241-253
    • Chave, J.1
  • 21
    • 84899409844 scopus 로고    scopus 로고
    • Top-down controls on bacterial community structure: Microbial network analysis of bacteria, T4-like viruses and protists
    • Chow C.-E.T, Kim DY, Sachdeva R, Caron DA, Fuhrman JA. (2014). Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists. ISME J 8: 816-829.
    • (2014) ISME J , vol.8 , pp. 816-829
    • Chow, C.-E.T.1    Kim, D.Y.2    Sachdeva, R.3    Caron, D.A.4    Fuhrman, J.A.5
  • 22
    • 84888200521 scopus 로고    scopus 로고
    • Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight
    • Chow C-ET, Sachdeva R, Cram JA, Steele JA, Needham DM, Patel A et al. (2013). Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight. ISME J 7: 2259-2273.
    • (2013) ISME J , vol.7 , pp. 2259-2273
    • Chow, C.-E.T.1    Sachdeva, R.2    Cram, J.A.3    Steele, J.A.4    Needham, D.M.5    Patel, A.6
  • 24
    • 1642376424 scopus 로고    scopus 로고
    • Microbial biogeography along an estuarine salinity gradient: Combined influences of bacterial growth and residence time
    • Crump BC, Hopkinson CS, Sogin ML, Hobbie JE. (2004). Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time. Appl Environ Microbiol 70: 1494-1505.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1494-1505
    • Crump, B.C.1    Hopkinson, C.S.2    Sogin, M.L.3    Hobbie, J.E.4
  • 25
    • 31544483932 scopus 로고    scopus 로고
    • Community genomics among stratified microbial assemblages in the Ocean's Interior
    • DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, Frigaard N-U et al. (2006). Community genomics among stratified microbial assemblages in the Ocean's Interior. Science 311: 496-503.
    • (2006) Science , vol.311 , pp. 496-503
    • Delong, E.F.1    Preston, C.M.2    Mincer, T.3    Rich, V.4    Hallam, S.J.5    Frigaard, N.-U.6
  • 29
    • 0001586331 scopus 로고
    • Distribution and transport of suspended particulate matter in Hueneme, Redondo, Newport, and la Jolla Submarine Canyons, California
    • Drake DE, Gorsline DS. (1973). Distribution and transport of suspended particulate matter in Hueneme, Redondo, Newport, and La Jolla Submarine Canyons, California. Geol Soc Am Bull 84: 3949-3968.
    • (1973) Geol Soc Am Bull , vol.84 , pp. 3949-3968
    • Drake, D.E.1    Gorsline, D.S.2
  • 30
    • 0033673546 scopus 로고    scopus 로고
    • Global high-resolution mapping of ocean circulation from TOPEX/Poseidon and ERS-1 and-2
    • Ducet N, Le Traon PY, Reverdin G. (2000). Global high-resolution mapping of ocean circulation from TOPEX/Poseidon and ERS-1 and-2. J Geophys Res 105: 19477-19498.
    • (2000) J Geophys Res , vol.105 , pp. 19477-19498
    • Ducet, N.1    Le Traon, P.Y.2    Reverdin, G.3
  • 31
    • 84875524387 scopus 로고    scopus 로고
    • Non-random assembly of bacterioplankton communities in the subtropical North Pacific Ocean
    • Eiler A, Hayakawa DH, Rappé MS. (2011). Non-random assembly of bacterioplankton communities in the subtropical North Pacific Ocean. Front Microbiol 2: 140.
    • (2011) Front Microbiol , vol.2 , pp. 140
    • Eiler, A.1    Hayakawa, D.H.2    Rappé, M.S.3
  • 32
    • 0035711246 scopus 로고    scopus 로고
    • Plankton dynamics: Observed and modelled responses to physical conditions in Prince William Sound, Alaska
    • Eslinger DL, Cooney RT, McRoy CP, Ward A, Kline TC, Simpson EP et al. (2001). Plankton dynamics: observed and modelled responses to physical conditions in Prince William Sound, Alaska. Fish Oceanogr 10: 81-96.
    • (2001) Fish Oceanogr , vol.10 , pp. 81-96
    • Eslinger, D.L.1    Cooney, R.T.2    McRoy, C.P.3    Ward, A.4    Kline, T.C.5    Simpson, E.P.6
  • 33
    • 38349122733 scopus 로고    scopus 로고
    • Assessing ecological responses to environmental change using statistical models
    • Ferguson CA, Carvalho L, Scott EM, Bowman AW, Kirika A. (2008). Assessing ecological responses to environmental change using statistical models. J Appl Ecol 45: 193-203.
    • (2008) J Appl Ecol , vol.45 , pp. 193-203
    • Ferguson, C.A.1    Carvalho, L.2    Scott, E.M.3    Bowman, A.W.4    Kirika, A.5
  • 34
    • 84857117285 scopus 로고    scopus 로고
    • Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient
    • Fortunato CS, Herfort L, Zuber P, Baptista AM, Crump BC. (2011). Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient. ISME J 6: 554-563.
    • (2011) ISME J , vol.6 , pp. 554-563
    • Fortunato, C.S.1    Herfort, L.2    Zuber, P.3    Baptista, A.M.4    Crump, B.C.5
  • 35
    • 84896719470 scopus 로고    scopus 로고
    • Bacterial carbon dependence on freshly produced phytoplankton exudates under different nutrient availability and grazing pressure conditions in coastal marine waters
    • Fouilland E, Tolosa I, Bonnet D, Bouvier C, Bouvier T, Bouvy M et al. (2014). Bacterial carbon dependence on freshly produced phytoplankton exudates under different nutrient availability and grazing pressure conditions in coastal marine waters. FEMS Microbiol Ecol 87: 757-769.
    • (2014) FEMS Microbiol Ecol , vol.87 , pp. 757-769
    • Fouilland, E.1    Tolosa, I.2    Bonnet, D.3    Bouvier, C.4    Bouvier, T.5    Bouvy, M.6
  • 36
    • 0038373575 scopus 로고    scopus 로고
    • Factors controlling the flux of organic carbon to the bathypelagic zone of the ocean
    • Francois R, Honjo S, Krishfield R, Manganini S. (2002). Factors controlling the flux of organic carbon to the bathypelagic zone of the ocean. Global Biogeochem Cycles 16: 34-1-34-20.
    • (2002) Global Biogeochem Cycles , vol.16 , pp. 341-3420
    • Francois, R.1    Honjo, S.2    Krishfield, R.3    Manganini, S.4
  • 39
    • 54549105879 scopus 로고    scopus 로고
    • Community structure of marine bacterioplankton: Patterns, networks, and relationships to function
    • Fuhrman J, Steele J. (2008). Community structure of marine bacterioplankton: patterns, networks, and relationships to function. Aquat Microb Ecol 53: 69-81.
    • (2008) Aquat Microb Ecol , vol.53 , pp. 69-81
    • Fuhrman, J.1    Steele, J.2
  • 40
    • 0000615869 scopus 로고
    • Extraction from Natural Planktonic microorganisms of DNA suitable for molecular biological studies
    • Fuhrman JA, Comeau DE, Hagström A Chan AM. (1988). Extraction from Natural Planktonic microorganisms of DNA suitable for molecular biological studies. Appl Environ Microbiol 54: 1426-1429.
    • (1988) Appl Environ Microbiol , vol.54 , pp. 1426-1429
    • Fuhrman, J.A.1    Comeau, D.E.2    Hagström, A.3    Chan, A.M.4
  • 41
    • 84891283485 scopus 로고    scopus 로고
    • Bacterial and archaeal community structure and its patterns
    • Wiley: Hoboken, NJ, pp
    • Fuhrman JA, Hagstrom A. (2008). Bacterial and archaeal community structure and its patterns. In Microbial Ecology of the Oceans. Wiley: Hoboken, NJ, pp 45-90.
    • (2008) Microbial Ecology of the Oceans , pp. 45-90
    • Fuhrman, J.A.1    Hagstrom, A.2
  • 43
    • 67949086798 scopus 로고    scopus 로고
    • Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing
    • Galand PE, Casamayor EO, Kirchman DL, Potvin M, Lovejoy C. (2009a). Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing. ISME J 3: 860-869.
    • (2009) ISME J , vol.3 , pp. 860-869
    • Galand, P.E.1    Casamayor, E.O.2    Kirchman, D.L.3    Potvin, M.4    Lovejoy, C.5
  • 45
    • 0033929777 scopus 로고    scopus 로고
    • Microdiversity of uncultured marine prokaryotes: The SAR11 cluster and the marine Archaea of Group i
    • Garcia-Martinez J, Rodriguez-Valera F. (2000). Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I. Mol Ecol 9: 935-948.
    • (2000) Mol Ecol , vol.9 , pp. 935-948
    • Garcia-Martinez, J.1    Rodriguez-Valera, F.2
  • 47
    • 84857029292 scopus 로고    scopus 로고
    • Seasonality in ocean microbial communities
    • Giovannoni SJ, Vergin KL. (2012). Seasonality in ocean microbial communities. Science 335: 671-676.
    • (2012) Science , vol.335 , pp. 671-676
    • Giovannoni, S.J.1    Vergin, K.L.2
  • 48
    • 79956293298 scopus 로고    scopus 로고
    • Nitrogen fixation within the water column associated with two hypoxic basins in the Southern California Bight
    • Hamersley MR, Turk KA, Leinweber A, Gruber N, Zehr JP, Gunderson T et al. (2011). Nitrogen fixation within the water column associated with two hypoxic basins in the Southern California Bight. Aquat Microb Ecol 63: 193-205.
    • (2011) Aquat Microb Ecol , vol.63 , pp. 193-205
    • Hamersley, M.R.1    Turk, K.A.2    Leinweber, A.3    Gruber, N.4    Zehr, J.P.5    Gunderson, T.6
  • 49
    • 44949223320 scopus 로고    scopus 로고
    • Water masses and biogeography of picoeukaryote assemblages in a cold hydrographically complex system
    • Hamilton AK, Lovejoy C, Galand PE, Ingram RG. (2008). Water masses and biogeography of picoeukaryote assemblages in a cold hydrographically complex system. Limnol Oceanogr 53: 922-935.
    • (2008) Limnol Oceanogr , vol.53 , pp. 922-935
    • Hamilton, A.K.1    Lovejoy, C.2    Galand, P.E.3    Ingram, R.G.4
  • 50
    • 0029660450 scopus 로고    scopus 로고
    • Marine snow derived from abandoned larvacean houses: Sinking rates, particle content and mechanisms of aggregate formation
    • Hansen J, Kirboe T, Alldredge A. (1996). Marine snow derived from abandoned larvacean houses: sinking rates, particle content and mechanisms of aggregate formation. Mar Ecol Prog Ser 141: 205-215.
    • (1996) Mar Ecol Prog ser , vol.141 , pp. 205-215
    • Hansen, J.1    Kirboe, T.2    Alldredge, A.3
  • 52
    • 84883404871 scopus 로고    scopus 로고
    • Microbial control of the dark end of the biological pump
    • Herndl GJ, Reinthaler T. (2013). Microbial control of the dark end of the biological pump. Nat Geosci 6: 718-724.
    • (2013) Nat Geosci , vol.6 , pp. 718-724
    • Herndl, G.J.1    Reinthaler, T.2
  • 53
    • 33744923681 scopus 로고    scopus 로고
    • Remarkable heterogeneity in meso-and bathypelagic bacterioplankton assemblage composition
    • Hewson I, Steele J, Capone D, Fuhrman J. (2006a). Remarkable heterogeneity in meso-and bathypelagic bacterioplankton assemblage composition. Limnol Oceanogr 51: 1274-1283.
    • (2006) Limnol Oceanogr , vol.51 , pp. 1274-1283
    • Hewson, I.1    Steele, J.2    Capone, D.3    Fuhrman, J.4
  • 54
    • 33646785416 scopus 로고    scopus 로고
    • Temporal and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters
    • Hewson I, Steele JA, Capone DG, Fuhrman JA. (2006b). Temporal and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters. Mar Ecol Prog Ser 311: 67-77.
    • (2006) Mar Ecol Prog ser , vol.311 , pp. 67-77
    • Hewson, I.1    Steele, J.A.2    Capone, D.G.3    Fuhrman, J.A.4
  • 55
    • 0027044652 scopus 로고
    • Circulation over the Santa Monica-San Pedro Basin and Shelf
    • Hickey BM. (1992). Circulation over the Santa Monica-San Pedro Basin and Shelf. Prog Oceanogr 30: 37-115.
    • (1992) Prog Oceanogr , vol.30 , pp. 37-115
    • Hickey, B.M.1
  • 56
    • 0001663045 scopus 로고
    • Variability in two deep coastal basins (Santa Monica and San Pedro) off southern California
    • Hickey BM. (1991). Variability in two deep coastal basins (Santa Monica and San Pedro) off southern California. J Geophys Res 96: 16689-16708.
    • (1991) J Geophys Res , vol.96 , pp. 16689-16708
    • Hickey, B.M.1
  • 57
    • 77954332545 scopus 로고    scopus 로고
    • What to do about missing values in time-series cross-section data
    • Honaker J, King G. (2010). What to do about missing values in time-series cross-section data. Am J Pol Sci 54: 561-581.
    • (2010) Am J Pol Sci , vol.54 , pp. 561-581
    • Honaker, J.1    King, G.2
  • 58
    • 20044377582 scopus 로고    scopus 로고
    • Effects of biodiversity on ecosystem functioning: A consensus of current knowledge
    • Hooper DU, Chapin III FS, Ewel JJ, Hector A, Inchausti P, Lavorel S et al. (2005). Effects of biodiversity on ecosystem functioning: a consensus of current knowledge. Ecol Monogr 75: 3-35.
    • (2005) Ecol Monogr , vol.75 , pp. 3-35
    • Hooper, D.U.1    Chapin, F.S.2    Ewel, J.J.3    Hector, A.4    Inchausti, P.5    Lavorel, S.6
  • 59
    • 35948973596 scopus 로고    scopus 로고
    • High temporal but low spatial heterogeneity of bacterioplankton in the Chesapeake Bay
    • Kan J, Suzuki MT, Wang K, Evans SE, Chen F. (2007). High temporal but low spatial heterogeneity of bacterioplankton in the Chesapeake Bay. Appl Environ Microbiol 73: 6776-6789.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 6776-6789
    • Kan, J.1    Suzuki, M.T.2    Wang, K.3    Evans, S.E.4    Chen, F.5
  • 60
    • 0035285349 scopus 로고    scopus 로고
    • Analyzing incomplete political science data: An alternative algorithm for multiple imputation
    • King G, Honaker J, Joseph A, Scheve K. (2001). Analyzing incomplete political science data: an alternative algorithm for multiple imputation. Am Pol Sci Rev 95: 49-69.
    • (2001) Am Pol Sci Rev , vol.95 , pp. 49-69
    • King, G.1    Honaker, J.2    Joseph, A.3    Scheve, K.4
  • 61
    • 0021910579 scopus 로고
    • Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems
    • Kirchman D, K'nees E, Hodson R. (1985). Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems. Appl Environ Microbiol 49: 599-607.
    • (1985) Appl Environ Microbiol , vol.49 , pp. 599-607
    • Kirchman, D.1    K'nees, E.2    Hodson, R.3
  • 62
    • 0036207009 scopus 로고    scopus 로고
    • The ecology of Cytophaga-Flavobacteria in aquatic environments
    • Kirchman DL. (2002). The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39: 91-100.
    • (2002) FEMS Microbiol Ecol , vol.39 , pp. 91-100
    • Kirchman, D.L.1
  • 65
    • 22744449344 scopus 로고    scopus 로고
    • Biodiversity in midwater cnidarians and ctenophores: Submersible-based results from deep-water bays in the Japan Sea and north-western Pacific
    • Lindsay DJ, Hunt JC. (2005). Biodiversity in midwater cnidarians and ctenophores: submersible-based results from deep-water bays in the Japan Sea and north-western Pacific. J Mar Biol Assoc UK 85: 503-517.
    • (2005) J Mar Biol Assoc UK , vol.85 , pp. 503-517
    • Lindsay, D.J.1    Hunt, J.C.2
  • 66
    • 0035814250 scopus 로고    scopus 로고
    • Microscale patchiness of bacterioplankton assemblage richness in seawater
    • Long RA, Azam F. (2001). Microscale patchiness of bacterioplankton assemblage richness in seawater. Aquat Microb Ecol 26: 103-113.
    • (2001) Aquat Microb Ecol , vol.26 , pp. 103-113
    • Long, R.A.1    Azam, F.2
  • 68
    • 0036376802 scopus 로고    scopus 로고
    • Effects of the 1997-1999 El Nino and la Nina events on zooplankton abundance and euphausiid community composition within the Monterey Bay coastal upwelling system
    • Marinovic BB, Croll DA, Gong N, Benson SR, Chavez FP. (2002). Effects of the 1997-1999 El Nino and La Nina events on zooplankton abundance and euphausiid community composition within the Monterey Bay coastal upwelling system. Prog Oceanogr 54: 265-277.
    • (2002) Prog Oceanogr , vol.54 , pp. 265-277
    • Marinovic, B.B.1    Croll, D.A.2    Gong, N.3    Benson, S.R.4    Chavez, F.P.5
  • 69
    • 34247847886 scopus 로고    scopus 로고
    • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
    • Mincer TJ, Church MJ, Taylor LT, Preston C, Karl DM, DeLong EF. (2007). Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ Microbiol 9: 1162-1175.
    • (2007) Environ Microbiol , vol.9 , pp. 1162-1175
    • Mincer, T.J.1    Church, M.J.2    Taylor, L.T.3    Preston, C.4    Karl, D.M.5    Delong, E.F.6
  • 70
    • 63649105556 scopus 로고    scopus 로고
    • A simple band ratio technique to quantify the colored dissolved and detrital organic material from ocean color remotely sensed data
    • Morel A, Gentili B. (2009). A simple band ratio technique to quantify the colored dissolved and detrital organic material from ocean color remotely sensed data. Rem Sens Environ 113: 998-1011.
    • (2009) Rem Sens Environ , vol.113 , pp. 998-1011
    • Morel, A.1    Gentili, B.2
  • 71
    • 25144481245 scopus 로고    scopus 로고
    • Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site
    • Morris RM, Vergin KL, Cho JC, Rappe MS, Carlson CA, Giovannoni SJ. (2005). Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site. Limnol Oceanogr 50: 1687-1696.
    • (2005) Limnol Oceanogr , vol.50 , pp. 1687-1696
    • Morris, R.M.1    Vergin, K.L.2    Cho, J.C.3    Rappe, M.S.4    Carlson, C.A.5    Giovannoni, S.J.6
  • 72
    • 84880922997 scopus 로고    scopus 로고
    • Short-term observations of marine bacterial and viral communities: Patterns, connections and resilience
    • Needham DM, Chow C-ET, Cram JA, Sachdeva R, Parada A, Fuhrman JA. (2013). Short-term observations of marine bacterial and viral communities: patterns, connections and resilience. ISME J 7: 1274-1285.
    • (2013) ISME J , vol.7 , pp. 1274-1285
    • Needham, D.M.1    Chow, C.-E.T.2    Cram, J.A.3    Sachdeva, R.4    Parada, A.5    Fuhrman, J.A.6
  • 74
    • 0001679973 scopus 로고    scopus 로고
    • Use of SYBR Green i for rapid epifluorescence counts of marine viruses and bacteria
    • Noble RT, Fuhrman JA. (1998). Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat Microb Ecol 14: 113-118.
    • (1998) Aquat Microb Ecol , vol.14 , pp. 113-118
    • Noble, R.T.1    Fuhrman, J.A.2
  • 75
    • 0029152679 scopus 로고
    • Phytoplankton extracellular release and bacterial growth: Dependence on the inorganic N: P ratio
    • Obernosterer I, Herndl GJ. (1995). Phytoplankton extracellular release and bacterial growth: dependence on the inorganic N: P ratio. Mar Ecol Prog Ser 116: 247-257.
    • (1995) Mar Ecol Prog ser , vol.116 , pp. 247-257
    • Obernosterer, I.1    Herndl, G.J.2
  • 78
    • 0033009854 scopus 로고    scopus 로고
    • Prochlorococcus, a marine photosynthetic prokaryote of global significance
    • Partensky F, Hess WR, Vaulot D. (1999). Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev 63: 106-127.
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 106-127
    • Partensky, F.1    Hess, W.R.2    Vaulot, D.3
  • 79
    • 34247535716 scopus 로고    scopus 로고
    • Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green i
    • Patel A, Noble RT, Steele JA, Schwalbach MS, Hewson I, Fuhrman JA. (2007). Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I. Nat Protoc 2: 269-276.
    • (2007) Nat Protoc , vol.2 , pp. 269-276
    • Patel, A.1    Noble, R.T.2    Steele, J.A.3    Schwalbach, M.S.4    Hewson, I.5    Fuhrman, J.A.6
  • 81
    • 33846914243 scopus 로고    scopus 로고
    • Global patterns of diversity and community structure in marine bacterioplankton
    • Pommier T, CanbäCk B, Riemann L, BoströM KH, Simu K, Lundberg P et al. (2007). Global patterns of diversity and community structure in marine bacterioplankton. Mol Ecol 16: 867-880.
    • (2007) Mol Ecol , vol.16 , pp. 867-880
    • Pommier, T.1    Canbäck, B.2    Riemann, L.3    Boström, K.H.4    Simu, K.5    Lundberg, P.6
  • 82
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
    • Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P et al. (2012). The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41: D590-D596.
    • (2012) Nucleic Acids Res , vol.41 , pp. D590-D596
    • Quast, C.1    Pruesse, E.2    Yilmaz, P.3    Gerken, J.4    Schweer, T.5    Yarza, P.6
  • 83
    • 78049309396 scopus 로고    scopus 로고
    • Unveiling a phytoplankton hotspot at a narrow boundary between coastal and offshore waters
    • Ribalet F, Marchetti A, Hubbard KA, Brown K, Durkin CA, Morales R et al. (2010). Unveiling a phytoplankton hotspot at a narrow boundary between coastal and offshore waters. PNAS 107: 16571-16576.
    • (2010) PNAS , vol.107 , pp. 16571-16576
    • Ribalet, F.1    Marchetti, A.2    Hubbard, K.A.3    Brown, K.4    Durkin, C.A.5    Morales, R.6
  • 84
    • 78650777550 scopus 로고    scopus 로고
    • Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray
    • Rich VI, Pham VD, Eppley J, Shi Y, DeLong EF. (2011). Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray. Environ Microbiol 13: 116-134.
    • (2011) Environ Microbiol , vol.13 , pp. 116-134
    • Rich, V.I.1    Pham, V.D.2    Eppley, J.3    Shi, Y.4    Delong, E.F.5
  • 85
    • 20644444369 scopus 로고    scopus 로고
    • Giant Larvacean Houses: Rapid carbon transport to the deep sea floor
    • Robison BH, Reisenbichler KR, Sherlock RE. (2005). Giant Larvacean Houses: rapid carbon transport to the deep sea floor. Science 308: 1609-1611.
    • (2005) Science , vol.308 , pp. 1609-1611
    • Robison, B.H.1    Reisenbichler, K.R.2    Sherlock, R.E.3
  • 86
    • 33745606460 scopus 로고    scopus 로고
    • A dynamic programming algorithm for binning microbial community profiles
    • Ruan Q, Steele JA, Schwalbach MS, Fuhrman JA, Sun F. (2006). A dynamic programming algorithm for binning microbial community profiles. Bioinformatics 22: 1508-1514.
    • (2006) Bioinformatics , vol.22 , pp. 1508-1514
    • Ruan, Q.1    Steele, J.A.2    Schwalbach, M.S.3    Fuhrman, J.A.4    Sun, F.5
  • 87
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II global ocean sampling expedition: Northwest Atlantic through eastern tropical pacific
    • Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S et al. (2007). The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical pacific. PLoS Biol 5: e77.
    • (2007) PLoS Biol , vol.5 , pp. e77
    • Rusch, D.B.1    Halpern, A.L.2    Sutton, G.3    Heidelberg, K.B.4    Williamson, S.5    Yooseph, S.6
  • 88
    • 78349241135 scopus 로고    scopus 로고
    • Depth matters: Microbial eukaryote diversity and community structure in the eastern North Pacific revealed through environmental gene libraries
    • Schnetzer A, Moorthi SD, Countway PD, Gast RJ, Gilg IC, Caron DA. (2011). Depth matters: Microbial eukaryote diversity and community structure in the eastern North Pacific revealed through environmental gene libraries. Deep Sea Res Part I Oceanogr Res Papers 58: 16-26.
    • (2011) Deep Sea Res Part i Oceanogr Res Papers , vol.58 , pp. 16-26
    • Schnetzer, A.1    Moorthi, S.D.2    Countway, P.D.3    Gast, R.J.4    Gilg, I.C.5    Caron, D.A.6
  • 89
    • 0016427831 scopus 로고
    • Changes in composition of bottom water of Santa-Barbara Basin-Effect
    • Sholkovitz E, Soutar A. (1975). Changes in composition of bottom water of Santa-Barbara Basin-Effect. DeepSea Res 22: 13-1.
    • (1975) DeepSea Res , vol.22 , pp. 13-21
    • Sholkovitz, E.1    Soutar, A.2
  • 92
    • 80052061077 scopus 로고    scopus 로고
    • Marine bacterial, archaeal and protistan association networks reveal ecological linkages
    • Steele JA, Countway PD, Xia L, Vigil PD, Beman JM, Kim DY et al. (2011). Marine bacterial, archaeal and protistan association networks reveal ecological linkages. ISME J 5: 1414-1425.
    • (2011) ISME J , vol.5 , pp. 1414-1425
    • Steele, J.A.1    Countway, P.D.2    Xia, L.3    Vigil, P.D.4    Beman, J.M.5    Kim, D.Y.6
  • 95
    • 0036688186 scopus 로고    scopus 로고
    • Zooplankton vertical migration and the active transport of dissolved organic and inorganic nitrogen in the Sargasso Sea
    • Steinberg DK, Goldthwait SA, Hansell DA. (2002). Zooplankton vertical migration and the active transport of dissolved organic and inorganic nitrogen in the Sargasso Sea. Deep Sea Res Part I Oceanogr Res Papers 49: 1445-1461.
    • (2002) Deep Sea Res Part i Oceanogr Res Papers , vol.49 , pp. 1445-1461
    • Steinberg, D.K.1    Goldthwait, S.A.2    Hansell, D.A.3
  • 96
    • 84963088893 scopus 로고
    • On conditions for the vernal blooming of phytoplankton
    • Sverdrup HU. (1953). On conditions for the vernal blooming of phytoplankton. J Cons 18: 287-295.
    • (1953) J Cons , vol.18 , pp. 287-295
    • Sverdrup, H.U.1
  • 97
    • 80052479893 scopus 로고    scopus 로고
    • Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the Dark Ocean
    • Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, Lamy D et al. (2011). Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the Dark Ocean. Science 333: 1296-1300.
    • (2011) Science , vol.333 , pp. 1296-1300
    • Swan, B.K.1    Martinez-Garcia, M.2    Preston, C.M.3    Sczyrba, A.4    Woyke, T.5    Lamy, D.6
  • 98
    • 84860488672 scopus 로고    scopus 로고
    • Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom
    • Teeling H, Fuchs BM, Becher D, Klockow C, Gardebrecht A, Bennke CM et al. (2012). Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science 336: 608-611.
    • (2012) Science , vol.336 , pp. 608-611
    • Teeling, H.1    Fuchs, B.M.2    Becher, D.3    Klockow, C.4    Gardebrecht, A.5    Bennke, C.M.6
  • 100
    • 84880919986 scopus 로고    scopus 로고
    • High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences
    • Vergin KL, Beszteri B, Monier A, Thrash JC, Temperton B, Treusch AH et al. (2013a). High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences. ISME J 7: 1322-1332.
    • (2013) ISME J , vol.7 , pp. 1322-1332
    • Vergin, K.L.1    Beszteri, B.2    Monier, A.3    Thrash, J.C.4    Temperton, B.5    Treusch, A.H.6
  • 101
    • 84889051477 scopus 로고    scopus 로고
    • Spatiotemporal distributions of rare bacterioplankton populations indicate adaptive strategies in the oligotrophic ocean
    • Vergin KL, Done B, Carlson CA, Giovannoni SJ. (2013b). Spatiotemporal distributions of rare bacterioplankton populations indicate adaptive strategies in the oligotrophic ocean. Aquat Microb Ecol 71: 1-13.
    • (2013) Aquat Microb Ecol , vol.71 , pp. 1-13
    • Vergin, K.L.1    Done, B.2    Carlson, C.A.3    Giovannoni, S.J.4
  • 102
    • 84892946520 scopus 로고    scopus 로고
    • Seasonal variability of microbial respiration and bacterial and archaeal community composition in the upper twilight zone
    • Weinbauer MG, Liu J, Motegi C, Maier C, Pedrotti ML, Dai M et al. (2013). Seasonal variability of microbial respiration and bacterial and archaeal community composition in the upper twilight zone. Aquat Microb Ecol 71: 99-115.
    • (2013) Aquat Microb Ecol , vol.71 , pp. 99-115
    • Weinbauer, M.G.1    Liu, J.2    Motegi, C.3    Maier, C.4    Pedrotti, M.L.5    Dai, M.6
  • 103
    • 77955938119 scopus 로고    scopus 로고
    • Autotrophic picoplankton in mesozooplankton guts: Evidence of aggregate feeding in the mesopelagic zone and export of small phytoplankton
    • Wilson SE, Steinberg DK. (2010). Autotrophic picoplankton in mesozooplankton guts: evidence of aggregate feeding in the mesopelagic zone and export of small phytoplankton. Mar Ecol Prog Ser 412: 11-27.
    • (2010) Mar Ecol Prog ser , vol.412 , pp. 11-27
    • Wilson, S.E.1    Steinberg, D.K.2
  • 104
    • 52949102049 scopus 로고    scopus 로고
    • A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones
    • Woebken D, Lam P, Kuypers MMM, Naqvi SWA, Kartal B, Strous M et al. (2008). A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environ Microbiol 10: 3106-3119.
    • (2008) Environ Microbiol , vol.10 , pp. 3106-3119
    • Woebken, D.1    Lam, P.2    Kuypers, M.M.M.3    Naqvi, S.W.A.4    Kartal, B.5    Strous, M.6
  • 105
    • 78650862532 scopus 로고    scopus 로고
    • Fast stable restricted maximum likelihood and marginal likelihood estimation of semiparametric generalized linear models
    • Wood SN. (2011). Fast stable restricted maximum likelihood and marginal likelihood estimation of semiparametric generalized linear models. J R Stat Soc Ser B Stat Methodol 73: 3-36.
    • (2011) J R Stat Soc ser B Stat Methodol , vol.73 , pp. 3-36
    • Wood, S.N.1
  • 106
    • 84923591447 scopus 로고    scopus 로고
    • Generalized Additive Models: An Introduction with R. Stable and efficient multiple smoothing parameter estimation for generalized additive models
    • Chapman & Hall/CRC: Boca Raton
    • Wood SN. (2006). Generalized Additive Models: An Introduction with R. Chapman & Hall/CRC: Boca Raton
    • (2006) J Am Stat Assoc
    • Wood, S.N.1
  • 107
    • 4944226585 scopus 로고    scopus 로고
    • Stable and efficient multiple smoothing parameter estimation for generalized additive models
    • FL. Wood SN. (2004). Stable and efficient multiple smoothing parameter estimation for generalized additive models. J Am Stat Assoc 99: 673-686.
    • (2004) J Am Stat Assoc , vol.99 , pp. 673-686
    • Wood, F.L.N.S.1
  • 108
    • 84861188582 scopus 로고    scopus 로고
    • Microbial ecology of expanding oxygen minimum zones
    • Wright JJ, Konwar KM, Hallam SJ. (2012). Microbial ecology of expanding oxygen minimum zones. Nat Rev Microbiol 10: 381-394.
    • (2012) Nat Rev Microbiol , vol.10 , pp. 381-394
    • Wright, J.J.1    Konwar, K.M.2    Hallam, S.J.3
  • 109
    • 84892979863 scopus 로고    scopus 로고
    • Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle
    • Wright JJ, Mewis K, Hanson NW, Konwar KM, Maas KR, Hallam SJ. (2013). Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle. ISME J 82 455-468.
    • (2013) ISME J , vol.82 , pp. 455-468
    • Wright, J.J.1    Mewis, K.2    Hanson, N.W.3    Konwar, K.M.4    Maas, K.R.5    Hallam, S.J.6
  • 110
    • 84873574553 scopus 로고    scopus 로고
    • Coastal bacterioplankton community dynamics in response to a natural disturbance
    • Yeo SK, Huggett MJ, Eiler A, Rappé MS. (2013). Coastal bacterioplankton community dynamics in response to a natural disturbance. PLoS One 8: e56207.
    • (2013) PLoS One , vol.8 , pp. e56207
    • Yeo, S.K.1    Huggett, M.J.2    Eiler, A.3    Rappé, M.S.4
  • 111
    • 0036195362 scopus 로고    scopus 로고
    • Nitrogen cycling in the ocean: New perspectives on processes and paradigms
    • Zehr JP, Ward BB. (2002). Nitrogen cycling in the ocean: new perspectives on processes and paradigms. Appl Environ Microbiol 68: 1015-1024.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1015-1024
    • Zehr, J.P.1    Ward, B.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.