메뉴 건너뛰기




Volumn 14, Issue 5, 2012, Pages 1133-1144

Basin-scale patterns in the abundance of SAR11 subclades, marine Actinobacteria (OM1), members of the Roseobacter clade and OCS116 in the South Atlantic

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; SEA WATER;

EID: 84859994630     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2011.02694.x     Document Type: Article
Times cited : (72)

References (43)
  • 1
    • 33749389950 scopus 로고    scopus 로고
    • Roseobacter and SAR11 dominate microbial glucose uptake in coastal North Sea waters
    • Alonso, C., and Pernthaler, J. (2006) Roseobacter and SAR11 dominate microbial glucose uptake in coastal North Sea waters. Environ Microbiol 8: 2022-2030.
    • (2006) Environ Microbiol , vol.8 , pp. 2022-2030
    • Alonso, C.1    Pernthaler, J.2
  • 2
    • 33947245554 scopus 로고    scopus 로고
    • Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH
    • Alonso-Saez, L., Balague, V., Sa, E.L., Sanchez, O., Gonzalez, J.M., Pinhassi, J., etal. (2007) Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH. FEMS Microbiol Ecol 60: 98-112.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 98-112
    • Alonso-Saez, L.1    Balague, V.2    Sa, E.L.3    Sanchez, O.4    Gonzalez, J.M.5    Pinhassi, J.6
  • 3
    • 79959607043 scopus 로고    scopus 로고
    • Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California
    • Beman, J.M., Steele, J.A., and Fuhrman, J.A. (2011) Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California. ISME J 5: 1077-1085.
    • (2011) ISME J , vol.5 , pp. 1077-1085
    • Beman, J.M.1    Steele, J.A.2    Fuhrman, J.A.3
  • 4
    • 23944517269 scopus 로고    scopus 로고
    • Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series
    • Brown, M.V., Schwalbach, M.S., Hewson, I., and Fuhrman, J.A. (2005) Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series. Environ Microbiol 7: 1466-1479.
    • (2005) Environ Microbiol , vol.7 , pp. 1466-1479
    • Brown, M.V.1    Schwalbach, M.S.2    Hewson, I.3    Fuhrman, J.A.4
  • 5
    • 0028162289 scopus 로고
    • The importance of Prochlorococcus to community structure in the Central North Pacific Ocean
    • Campbell, L., Nolla, H.A., and Vaulot, D. (1994) The importance of Prochlorococcus to community structure in the Central North Pacific Ocean. Limnol Oceanogr 39: 954-961.
    • (1994) Limnol Oceanogr , vol.39 , pp. 954-961
    • Campbell, L.1    Nolla, H.A.2    Vaulot, D.3
  • 6
    • 3843095886 scopus 로고    scopus 로고
    • Interactions among dissolved organic carbon, microbial processes, and community structure in the mesopelagic zone of the Northwestern Sargasso Sea
    • Carlson, C.A., Giovannoni, S.J., Hansell, D.A., Goldberg, S.J., Parsons, R., and Vergin, K. (2004) Interactions among dissolved organic carbon, microbial processes, and community structure in the mesopelagic zone of the Northwestern Sargasso Sea. Limnol Oceanogr 49: 1073-1083.
    • (2004) Limnol Oceanogr , vol.49 , pp. 1073-1083
    • Carlson, C.A.1    Giovannoni, S.J.2    Hansell, D.A.3    Goldberg, S.J.4    Parsons, R.5    Vergin, K.6
  • 7
    • 60749109199 scopus 로고    scopus 로고
    • Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea
    • Carlson, C.A., Morris, R., Parsons, R., Treusch, A.H., Giovannoni, S.J., and Vergin, K. (2009) Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea. ISME J 3: 283-295.
    • (2009) ISME J , vol.3 , pp. 283-295
    • Carlson, C.A.1    Morris, R.2    Parsons, R.3    Treusch, A.H.4    Giovannoni, S.J.5    Vergin, K.6
  • 8
    • 77954143164 scopus 로고    scopus 로고
    • Dissolved organic carbon export and subsequent remineralization in the mesopelagic and bathypelagic realms of the North Atlantic basin
    • Carlson, C.A., Hansell, D.A., Nelson, N.B., Siegel, D.A., Smethie, W.M., Khatiwala, S., etal. (2010) Dissolved organic carbon export and subsequent remineralization in the mesopelagic and bathypelagic realms of the North Atlantic basin. Deep Sea Res Part II Top Stud Oceanogr 57: 1433-1445.
    • (2010) Deep Sea Res Part II Top Stud Oceanogr , vol.57 , pp. 1433-1445
    • Carlson, C.A.1    Hansell, D.A.2    Nelson, N.B.3    Siegel, D.A.4    Smethie, W.M.5    Khatiwala, S.6
  • 9
    • 0035033936 scopus 로고    scopus 로고
    • Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso Sea
    • DuRand, M.D., Olson, R.J., and Chisholm, S.W. (2001) Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso Sea. Deep Sea Res Part II Top Stud Oceanogr 48: 1983-2003.
    • (2001) Deep Sea Res Part II Top Stud Oceanogr , vol.48 , pp. 1983-2003
    • DuRand, M.D.1    Olson, R.J.2    Chisholm, S.W.3
  • 10
    • 69949095008 scopus 로고    scopus 로고
    • Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre
    • Eiler, A., Hayakawa, D.H., Church, M.J., Karl, D.M., and Rappé, M.S. (2009) Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre. Environ Microbiol 11: 2291-2300.
    • (2009) Environ Microbiol , vol.11 , pp. 2291-2300
    • Eiler, A.1    Hayakawa, D.H.2    Church, M.J.3    Karl, D.M.4    Rappé, M.S.5
  • 12
    • 0033929777 scopus 로고    scopus 로고
    • Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I
    • Garcia-Martinez, J., and Rodriguez-Valera, F. (2000) Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I. Mol Ecol 9: 935-948.
    • (2000) Mol Ecol , vol.9 , pp. 935-948
    • Garcia-Martinez, J.1    Rodriguez-Valera, F.2
  • 13
    • 25144486755 scopus 로고    scopus 로고
    • Molecular diversity and ecology of microbial plankton
    • Giovannoni, S.J., and Stingl, U. (2005) Molecular diversity and ecology of microbial plankton. Nature 437: 343-348.
    • (2005) Nature , vol.437 , pp. 343-348
    • Giovannoni, S.J.1    Stingl, U.2
  • 14
  • 17
    • 45449116493 scopus 로고    scopus 로고
    • An assessment of actinobacterial diversity in the marine environment
    • Jensen, P.R., and Lauro, F.M. (2008) An assessment of actinobacterial diversity in the marine environment. Antonie Van Leeuwenhoek 94: 51-62.
    • (2008) Antonie Van Leeuwenhoek , vol.94 , pp. 51-62
    • Jensen, P.R.1    Lauro, F.M.2
  • 18
    • 59049088352 scopus 로고    scopus 로고
    • Detoxification of sulphidic African shelf waters by blooming chemolithotrophs
    • Lavik, G., Stuhrmann, T., Bruchert, V., Van der Plas, A., Mohrholz, V., Lam, P., etal. (2009) Detoxification of sulphidic African shelf waters by blooming chemolithotrophs. Nature 457: 581-584.
    • (2009) Nature , vol.457 , pp. 581-584
    • Lavik, G.1    Stuhrmann, T.2    Bruchert, V.3    Van der Plas, A.4    Mohrholz, V.5    Lam, P.6
  • 20
    • 84859947318 scopus 로고    scopus 로고
    • Analysis of ecological communities. MJM Software.
    • McCune, B., and Grace, J.B. (2002) Analysis of ecological communities. MJM Software.
    • (2002)
    • McCune, B.1    Grace, J.B.2
  • 21
    • 3242797571 scopus 로고    scopus 로고
    • Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic ocean
    • Malmstrom, R.R., Kiene, R.P., Cottrell, M.T., and Kirchman, D.L. (2004) Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic ocean. Appl Environ Microbiol 70: 4129-4135.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4129-4135
    • Malmstrom, R.R.1    Kiene, R.P.2    Cottrell, M.T.3    Kirchman, D.L.4
  • 22
    • 20444408325 scopus 로고    scopus 로고
    • Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean
    • Malmstrom, R.R., Cottrell, M.T., Elifantz, H., and Kirchman, D.L. (2005) Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean. Appl Environ Microbiol 71: 2979-2986.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 2979-2986
    • Malmstrom, R.R.1    Cottrell, M.T.2    Elifantz, H.3    Kirchman, D.L.4
  • 25
    • 25144481245 scopus 로고    scopus 로고
    • Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site
    • Morris, R.M., Vergin, K.L., Cho, J.C., Rappe, M.S., Carlson, C.A., and Giovannoni, S.J. (2005) Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site. Limnol Oceanogr 50: 1687-1696.
    • (2005) Limnol Oceanogr , vol.50 , pp. 1687-1696
    • Morris, R.M.1    Vergin, K.L.2    Cho, J.C.3    Rappe, M.S.4    Carlson, C.A.5    Giovannoni, S.J.6
  • 26
    • 33745768376 scopus 로고    scopus 로고
    • Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom
    • Morris, R.M., Longnecker, K., and Giovannoni, S.J. (2006) Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom. Environ Microbiol 8: 1361-1370.
    • (2006) Environ Microbiol , vol.8 , pp. 1361-1370
    • Morris, R.M.1    Longnecker, K.2    Giovannoni, S.J.3
  • 27
    • 77951497989 scopus 로고    scopus 로고
    • Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction
    • Morris, R.M., Nunn, B.L., Frazar, C., Goodlett, D.R., Ting, Y.S., and Rocap, G. (2010) Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction. ISME J 4: 673-685.
    • (2010) ISME J , vol.4 , pp. 673-685
    • Morris, R.M.1    Nunn, B.L.2    Frazar, C.3    Goodlett, D.R.4    Ting, Y.S.5    Rocap, G.6
  • 28
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler, A., Pernthaler, J., and Amann, R. (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol 68: 3094-3101.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 29
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W., Peplies, J., and Glockner, F.O. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glockner, F.O.7
  • 30
    • 0033824875 scopus 로고    scopus 로고
    • Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems
    • Rappé, M.S., Vergin, K., and Giovannoni, S.J. (2000) Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems. FEMS Microbiol Ecol 33: 219-232.
    • (2000) FEMS Microbiol Ecol , vol.33 , pp. 219-232
    • Rappé, M.S.1    Vergin, K.2    Giovannoni, S.J.3
  • 32
    • 0036883627 scopus 로고    scopus 로고
    • Interactive analysis and visualization of geoscience data with Ocean Data View
    • Schlitzer, R. (2002) Interactive analysis and visualization of geoscience data with Ocean Data View. Comput Geosci 28: 1211-1218.
    • (2002) Comput Geosci , vol.28 , pp. 1211-1218
    • Schlitzer, R.1
  • 33
    • 77649128177 scopus 로고    scopus 로고
    • The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity
    • Schwalbach, M.S., Tripp, H.J., Steindler, L., Smith, D.P., and Giovannoni, S.J. (2010) The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity. Environ Microbiol 12: 490-500.
    • (2010) Environ Microbiol , vol.12 , pp. 490-500
    • Schwalbach, M.S.1    Tripp, H.J.2    Steindler, L.3    Smith, D.P.4    Giovannoni, S.J.5
  • 35
    • 58049112263 scopus 로고    scopus 로고
    • Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea
    • Sowell, S.M., Wilhelm, L.J., Norbeck, A.D., Lipton, M.S., Nicora, C.D., Barofsky, D.F., etal. (2009) Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea. ISME J 3: 93-105.
    • (2009) ISME J , vol.3 , pp. 93-105
    • Sowell, S.M.1    Wilhelm, L.J.2    Norbeck, A.D.3    Lipton, M.S.4    Nicora, C.D.5    Barofsky, D.F.6
  • 37
    • 0035208354 scopus 로고    scopus 로고
    • Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton
    • Suzuki, M.T., Béjà, O., Taylor, L.T., and DeLong, E.F. (2001) Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton. Environ Microbiol 3: 323-331.
    • (2001) Environ Microbiol , vol.3 , pp. 323-331
    • Suzuki, M.T.1    Béjà, O.2    Taylor, L.T.3    DeLong, E.F.4
  • 41
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q., Garrity, G.M., Tiedje, J.M., and Cole, J.R. (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 42
    • 0030988067 scopus 로고    scopus 로고
    • A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer
    • Wright, T.D., Vergin, K.L., Boyd, P.W., and Giovannoni, S.J. (1997) A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer. Appl Environ Microbiol 63: 1441-1448.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1441-1448
    • Wright, T.D.1    Vergin, K.L.2    Boyd, P.W.3    Giovannoni, S.J.4
  • 43
    • 0034604416 scopus 로고    scopus 로고
    • Phosphate depletion in the western North Atlantic Ocean
    • Wu, J., Sunda, W., Boyle, E.A., and Karl, D.M. (2000) Phosphate depletion in the western North Atlantic Ocean. Science 289: 759-762.
    • (2000) Science , vol.289 , pp. 759-762
    • Wu, J.1    Sunda, W.2    Boyle, E.A.3    Karl, D.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.