메뉴 건너뛰기




Volumn 10, Issue 1, 2010, Pages

Phylogenetic analysis of the vertebrate excitatory/neutral amino acid transporter (SLC1/EAAT) family reveals lineage specific subfamilies

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; ENZYME; EVOLUTIONARY THEORY; GENE; GENOME; PHYLOGENETICS; VERTEBRATE;

EID: 77951526133     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-117     Document Type: Article
Times cited : (45)

References (50)
  • 2
    • 26444603772 scopus 로고    scopus 로고
    • Two rounds of whole genome duplication in the ancestral vertebrate
    • 10.1371/journal.pbio.0030314. 16128622
    • Two rounds of whole genome duplication in the ancestral vertebrate. P Dehal JL Boore, PLoS Biol 2005 3 10 314 10.1371/journal.pbio.0030314 16128622
    • (2005) PLoS Biol , vol.3 , Issue.10 , pp. 5314
    • Dehal, P.1    Boore, J.L.2
  • 4
    • 0037351989 scopus 로고    scopus 로고
    • Genome duplication, a trait shared by 22000 species of ray-finned fish
    • 10.1101/gr.640303. 12618368
    • Genome duplication, a trait shared by 22000 species of ray-finned fish. JS Taylor I Braasch T Frickey A Meyer Y Van de Peer, Genome Res 2003 13 3 382 390 10.1101/gr.640303 12618368
    • (2003) Genome Res , vol.13 , Issue.3 , pp. 382-390
    • Taylor, J.S.1    Braasch, I.2    Frickey, T.3    Meyer, A.4    De, P.Y.V.5
  • 5
    • 26244444380 scopus 로고    scopus 로고
    • From 2R to 3R: Evidence for a fish-specific genome duplication (FSGD)
    • 10.1002/bies.20293. 16108068
    • From 2R to 3R: evidence for a fish-specific genome duplication (FSGD). A Meyer Y Van de Peer, Bioessays 2005 27 9 937 945 10.1002/bies.20293 16108068
    • (2005) Bioessays , vol.27 , Issue.9 , pp. 937-945
    • Meyer, A.1    De, P.Y.V.2
  • 11
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • 10101175
    • Preservation of duplicate genes by complementary, degenerative mutations. A Force M Lynch FB Pickett A Amores YL Yan J Postlethwait, Genetics 1999 151 4 1531 1545 10101175
    • (1999) Genetics , vol.151 , Issue.4 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5    Postlethwait, J.6
  • 12
    • 0033972072 scopus 로고    scopus 로고
    • The probability of duplicate gene preservation by subfunctionalization
    • 10629003
    • The probability of duplicate gene preservation by subfunctionalization. M Lynch A Force, Genetics 2000 154 1 459 473 10629003
    • (2000) Genetics , vol.154 , Issue.1 , pp. 459-473
    • Lynch, M.1    Force, A.2
  • 13
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • 10.1126/science.290.5494.1151. 11073452
    • The evolutionary fate and consequences of duplicate genes. M Lynch JS Conery, Science 2000 290 5494 1151 1155 10.1126/science.290.5494.1151 11073452
    • (2000) Science , vol.290 , Issue.5494 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 14
    • 0035368224 scopus 로고    scopus 로고
    • Genome duplication, divergent resolution and speciation
    • 10.1016/S0168-9525(01)02318-6. 11377777
    • Genome duplication, divergent resolution and speciation. JS Taylor Y Van de Peer A Meyer, Trends Genet 2001 17 6 299 301 10.1016/S0168-9525(01)02318-6 11377777
    • (2001) Trends Genet , vol.17 , Issue.6 , pp. 299-301
    • Taylor, J.S.1    De, P.Y.V.2    Meyer, A.3
  • 15
    • 42549159450 scopus 로고    scopus 로고
    • Genome evolution and speciation genetics of clawed frogs (Xenopus and Silurana)
    • 10.2741/3033. 18508539
    • Genome evolution and speciation genetics of clawed frogs (Xenopus and Silurana). BJ Evans, Front Biosci 2008 13 4687 4706 10.2741/3033 18508539
    • (2008) Front Biosci , vol.13 , pp. 4687-4706
    • Evans, B.J.1
  • 16
    • 74349086025 scopus 로고    scopus 로고
    • The origin of bmp16, a novel Bmp2/4 relative, retained in teleost fish genomes
    • 10.1186/1471-2148-9-277. 19951429
    • The origin of bmp16, a novel Bmp2/4 relative, retained in teleost fish genomes. N Feiner G Begemann AJ Renz A Meyer S Kuraku, BMC Evol Biol 2009 9 1 277 10.1186/1471-2148-9-277 19951429
    • (2009) BMC Evol Biol , vol.9 , Issue.1 , pp. 277
    • Feiner, N.1    Begemann, G.2    Renz, A.J.3    Meyer, A.4    Kuraku, S.5
  • 17
    • 69449108407 scopus 로고    scopus 로고
    • The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication
    • 10.1387/ijdb.072533km. 19557682
    • The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication. S Kuraku A Meyer, Int J Dev Biol 2009 53 5-6 765 773 10.1387/ijdb.072533km 19557682
    • (2009) Int J Dev Biol , vol.53 , Issue.5-6 , pp. 765-773
    • Kuraku, S.1    Meyer, A.2
  • 18
    • 0035993231 scopus 로고    scopus 로고
    • Excitatory amino acid transporters: Keeping up with glutamate
    • 10.1016/S0197-0186(02)00018-9. 12176072
    • Excitatory amino acid transporters: keeping up with glutamate. SG Amara AC Fontana, Neurochem Int 2002 41 5 313 318 10.1016/S0197-0186(02)00018-9 12176072
    • (2002) Neurochem Int , vol.41 , Issue.5 , pp. 313-318
    • Amara, S.G.1    Fontana, A.C.2
  • 19
    • 0028031487 scopus 로고
    • Functional comparisons of three glutamate transporter subtypes cloned from human motor cortex
    • 7521911
    • Functional comparisons of three glutamate transporter subtypes cloned from human motor cortex. JL Arriza WA Fairman JI Wadiche GH Murdoch MP Kavanaugh SG Amara, J Neurosci 1994 14 9 5559 5569 7521911
    • (1994) J Neurosci , vol.14 , Issue.9 , pp. 5559-5569
    • Arriza, J.L.1    Fairman, W.A.2    Wadiche, J.I.3    Murdoch, G.H.4    Kavanaugh, M.P.5    Amara, S.G.6
  • 20
    • 17744363326 scopus 로고    scopus 로고
    • Electrogenic glutamate transporters in the CNS: Molecular mechanism, pre-steady-state kinetics, and their impact on synaptic signaling
    • 10.1007/s00232-004-0731-6. 15834685
    • Electrogenic glutamate transporters in the CNS: molecular mechanism, pre-steady-state kinetics, and their impact on synaptic signaling. C Grewer T Rauen, J Membr Biol 2005 203 1 1 20 10.1007/s00232-004-0731-6 15834685
    • (2005) J Membr Biol , vol.203 , Issue.1 , pp. 1-20
    • Grewer, C.1    Rauen, T.2
  • 21
    • 2942575981 scopus 로고    scopus 로고
    • Glutamate transporters bring competition to the synapse
    • 10.1016/j.conb.2004.05.007. 15194115
    • Glutamate transporters bring competition to the synapse. YH Huang DE Bergles, Curr Opin Neurobiol 2004 14 3 346 352 10.1016/j.conb.2004.05.007 15194115
    • (2004) Curr Opin Neurobiol , vol.14 , Issue.3 , pp. 346-352
    • Huang, Y.H.1    Bergles, D.E.2
  • 22
    • 1242317710 scopus 로고    scopus 로고
    • The glutamate/neutral amino acid transporter family SLC1: Molecular, physiological and pharmacological aspects
    • 10.1007/s00424-003-1146-4. 14530974
    • The glutamate/neutral amino acid transporter family SLC1: molecular, physiological and pharmacological aspects. Y Kanai MA Hediger, Pflugers Arch 2004 447 5 469 479 10.1007/s00424-003-1146-4 14530974
    • (2004) Pflugers Arch , vol.447 , Issue.5 , pp. 469-479
    • Kanai, Y.1    Hediger, M.A.2
  • 23
    • 33846217457 scopus 로고    scopus 로고
    • Transporters for L-glutamate: An update on their molecular pharmacology and pathological involvement
    • 10.1038/sj.bjp.0706949. 17088867
    • Transporters for L-glutamate: an update on their molecular pharmacology and pathological involvement. PM Beart RD O'Shea, Br J Pharmacol 2007 150 1 5 17 10.1038/sj.bjp.0706949 17088867
    • (2007) Br J Pharmacol , vol.150 , Issue.1 , pp. 5-17
    • Beart, P.M.1    O'Shea, R.D.2
  • 24
    • 14644442252 scopus 로고    scopus 로고
    • A channel in a transporter
    • 10.1111/j.1440-1681.2005.04164.x. 15730426
    • A channel in a transporter. RM Ryan RJ Vandenberg, Clin Exp Pharmacol Physiol 2005 32 1-2 1 6 10.1111/j.1440-1681.2005.04164.x 15730426
    • (2005) Clin Exp Pharmacol Physiol , vol.32 , Issue.1-2 , pp. 1-6
    • Ryan, R.M.1    Vandenberg, R.J.2
  • 26
    • 33747080821 scopus 로고    scopus 로고
    • The glutamate-aspartate transporter GLAST mediates glutamate uptake at inner hair cell afferent synapses in the mammalian cochlea
    • 10.1523/JNEUROSCI.1545-06.2006. 16855093
    • The glutamate-aspartate transporter GLAST mediates glutamate uptake at inner hair cell afferent synapses in the mammalian cochlea. E Glowatzki N Cheng H Hiel E Yi K Tanaka GC Ellis-Davies JD Rothstein DE Bergles, J Neurosci 2006 26 29 7659 7664 10.1523/JNEUROSCI.1545-06.2006 16855093
    • (2006) J Neurosci , vol.26 , Issue.29 , pp. 7659-7664
    • Glowatzki, E.1    Cheng, N.2    Hiel, H.3    Yi, E.4    Tanaka, K.5    Ellis-Davies, G.C.6    Rothstein, J.D.7    Bergles, D.E.8
  • 27
    • 33846675265 scopus 로고    scopus 로고
    • A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group
    • 17257443
    • A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group. Y Kawahara T Imanishi, BMC Evol Biol 2007 7 9 17257443
    • (2007) BMC Evol Biol , vol.7 , pp. 9
    • Kawahara, Y.1    Imanishi, T.2
  • 28
    • 0034633626 scopus 로고    scopus 로고
    • Lineage-specific loss and divergence of functionally linked genes in eukaryotes
    • 10.1073/pnas.200346997. 11016957
    • Lineage-specific loss and divergence of functionally linked genes in eukaryotes. L Aravind H Watanabe DJ Lipman EV Koonin, Proc Natl Acad Sci USA 2000 97 21 11319 11324 10.1073/pnas.200346997 11016957
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.21 , pp. 11319-11324
    • Aravind, L.1    Watanabe, H.2    Lipman, D.J.3    Koonin, E.V.4
  • 29
    • 33747353512 scopus 로고    scopus 로고
    • Expression patterns of plexins and neuropilins are consistent with cooperative and separate functions during neural development
    • 10.1186/1471-213X-6-32. 16846494
    • Expression patterns of plexins and neuropilins are consistent with cooperative and separate functions during neural development. O Mauti R Sadhu J Gemayel M Gesemann ET Stoeckli, BMC Dev Biol 2006 6 32 10.1186/1471-213X-6-32 16846494
    • (2006) BMC Dev Biol , vol.6 , pp. 32
    • Mauti, O.1    Sadhu, R.2    Gemayel, J.3    Gesemann, M.4    Stoeckli, E.T.5
  • 30
    • 65249090252 scopus 로고    scopus 로고
    • Gene birth, death, and divergence: The different scenarios of reproduction-related gene evolution
    • 10.1095/biolreprod.108.073684. 19129511
    • Gene birth, death, and divergence: the different scenarios of reproduction-related gene evolution. X Tian G Pascal S Fouchecourt P Pontarotti P Monget, Biol Reprod 2009 80 4 616 621 10.1095/biolreprod.108.073684 19129511
    • (2009) Biol Reprod , vol.80 , Issue.4 , pp. 616-621
    • Tian, X.1    Pascal, G.2    Fouchecourt, S.3    Pontarotti, P.4    Monget, P.5
  • 31
    • 59849091566 scopus 로고    scopus 로고
    • The life and death of gene families
    • 10.1002/bies.080085. 19153999
    • The life and death of gene families. JP Demuth MW Hahn, Bioessays 2009 31 1 29 39 10.1002/bies.080085 19153999
    • (2009) Bioessays , vol.31 , Issue.1 , pp. 29-39
    • Demuth, J.P.1    Hahn, M.W.2
  • 32
    • 0031972667 scopus 로고    scopus 로고
    • Excitatory amino acid transporters of the salamander retina: Identification, localization, and function
    • Excitatory amino acid transporters of the salamander retina: identification, localization, and function. S Eliasof JL Arriza BH Leighton MP Kavanaugh SG Amara, J Neurosci 1998 18 2 698 712 9425012 (Pubitemid 28041906)
    • (1998) Journal of Neuroscience , vol.18 , Issue.2 , pp. 698-712
    • Eliasof, S.1    Arriza, J.L.2    Leighton, B.H.3    Kavanaugh, M.P.4    Amara, S.G.5
  • 33
    • 0032078972 scopus 로고    scopus 로고
    • Localization and function of five glutamate transporters cloned from the salamander retina
    • 10.1016/S0042-6989(97)00452-5. 9667010
    • Localization and function of five glutamate transporters cloned from the salamander retina. S Eliasof JL Arriza BH Leighton SG Amara MP Kavanaugh, Vision Res 1998 38 10 1443 1454 10.1016/S0042-6989(97)00452-5 9667010
    • (1998) Vision Res , vol.38 , Issue.10 , pp. 1443-1454
    • Eliasof, S.1    Arriza, J.L.2    Leighton, B.H.3    Amara, S.G.4    Kavanaugh, M.P.5
  • 34
    • 57749184792 scopus 로고    scopus 로고
    • Timing of genome duplications relative to the origin of the vertebrates: Did cyclostomes diverge before or after?
    • 10.1093/molbev/msn222. 18842688
    • Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after? S Kuraku A Meyer S Kuratani, Mol Biol Evol 2009 26 1 47 59 10.1093/molbev/msn222 18842688
    • (2009) Mol Biol Evol , vol.26 , Issue.1 , pp. 47-59
    • Kuraku, S.1    Meyer, A.2    Kuratani, S.3
  • 35
    • 0034694246 scopus 로고    scopus 로고
    • Immunocytochemical localization of glutamate receptor subunits in the brain stem and cerebellum of the turtle Chrysemys picta
    • 10.1002/1096-9861(20001120)427:3<455::AID-CNE11>3.0.CO;2-X. 11054706
    • Immunocytochemical localization of glutamate receptor subunits in the brain stem and cerebellum of the turtle Chrysemys picta. J Keifer MT Carr, J Comp Neurol 2000 427 3 455 468 10.1002/1096-9861(20001120)427:3<455::AID- CNE11>3.0.CO;2-X 11054706
    • (2000) J Comp Neurol , vol.427 , Issue.3 , pp. 455-468
    • Keifer, J.1    Carr, M.T.2
  • 37
    • 0028387996 scopus 로고
    • Large-scale mutagenesis in the zebrafish: In search of genes controlling development in a vertebrate
    • 10.1016/S0960-9822(00)00048-8. 7922324
    • Large-scale mutagenesis in the zebrafish: in search of genes controlling development in a vertebrate. MC Mullins M Hammerschmidt P Haffter C Nusslein-Volhard, Curr Biol 1994 4 3 189 202 10.1016/S0960-9822(00)00048-8 7922324
    • (1994) Curr Biol , vol.4 , Issue.3 , pp. 189-202
    • Mullins, M.C.1    Hammerschmidt, M.2    Haffter, P.3    Nusslein-Volhard, C.4
  • 38
    • 0345169036 scopus 로고    scopus 로고
    • Splicing double: Insights from the second spliceosome
    • 10.1038/nrm1259. 14685174
    • Splicing double: insights from the second spliceosome. AA Patel JA Steitz, Nat Rev Mol Cell Biol 2003 4 12 960 970 10.1038/nrm1259 14685174
    • (2003) Nat Rev Mol Cell Biol , vol.4 , Issue.12 , pp. 960-970
    • Patel, A.A.1    Steitz, J.A.2
  • 39
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • 10742046
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. J Castresana, Mol Biol Evol 2000 17 4 540 552 10742046
    • (2000) Mol Biol Evol , vol.17 , Issue.4 , pp. 540-552
    • Castresana, J.1
  • 40
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520. 14530136
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 5 696 704 10.1080/10635150390235520 14530136
    • (2003) Syst Biol , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 41
    • 33750314083 scopus 로고    scopus 로고
    • TreeDyn: Towards dynamic graphics and annotations for analyses of trees
    • 10.1186/1471-2105-7-439. 17032440
    • TreeDyn: towards dynamic graphics and annotations for analyses of trees. F Chevenet C Brun AL Banuls B Jacq R Christen, BMC Bioinformatics 2006 7 439 10.1186/1471-2105-7-439 17032440
    • (2006) BMC Bioinformatics , vol.7 , pp. 439
    • Chevenet, F.1    Brun, C.2    Banuls, A.L.3    Jacq, B.4    Christen, R.5
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 10.1093/nar/22.22.4673. 7984417
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 22 4673 4680 10.1093/nar/22.22.4673 7984417
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • 10.1006/jmbi.2000.4042. 10964570
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment. C Notredame DG Higgins J Heringa, J Mol Biol 2000 302 1 205 217 10.1006/jmbi.2000.4042 10964570
    • (2000) J Mol Biol , vol.302 , Issue.1 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 44
    • 0000122573 scopus 로고
    • Phylogeny interface package
    • Phylogeny interface package. J Felsenstein, Cladistics 1989 5 164 166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 45
    • 33947657892 scopus 로고    scopus 로고
    • Fast computation of distance estimators
    • 10.1186/1471-2105-8-89. 17355623
    • Fast computation of distance estimators. I Elias J Lagergren, BMC Bioinformatics 2007 8 89 10.1186/1471-2105-8-89 17355623
    • (2007) BMC Bioinformatics , vol.8 , pp. 89
    • Elias, I.1    Lagergren, J.2
  • 46
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • 10.1093/bioinformatics/17.8.754. 11524383
    • MRBAYES: Bayesian inference of phylogenetic trees. JP Huelsenbeck F Ronquist, Bioinformatics 2001 17 8 754 755 10.1093/bioinformatics/17.8.754 11524383
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 47
    • 0028141719 scopus 로고
    • A method for constructing radiation hybrid maps of whole genomes
    • 10.1038/ng0594-22. 8075634
    • A method for constructing radiation hybrid maps of whole genomes. MA Walter DJ Spillett P Thomas J Weissenbach PN Goodfellow, Nat Genet 1994 7 1 22 28 10.1038/ng0594-22 8075634
    • (1994) Nat Genet , vol.7 , Issue.1 , pp. 22-28
    • Walter, M.A.1    Spillett, D.J.2    Thomas, P.3    Weissenbach, J.4    Goodfellow, P.N.5
  • 49
    • 0035704743 scopus 로고    scopus 로고
    • Generating transparent zebrafish: A refined method to improve detection of gene expression during embryonic development
    • 10.1007/s1012601-0053-4. 14961324
    • Generating transparent zebrafish: a refined method to improve detection of gene expression during embryonic development. J Karlsson J von Hofsten PE Olsson, Mar Biotechnol (NY) 2001 3 6 522 527 10.1007/s1012601-0053-4 14961324
    • (2001) Mar Biotechnol (NY) , vol.3 , Issue.6 , pp. 522-527
    • Karlsson, J.1    Von Hofsten, J.2    Olsson, P.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.