-
1
-
-
0029965550
-
The Cyc8 (Ssn6)-Tup1 corepressor complex is composed of one Cyc8 and four Tup1 subunits
-
U.S. Varanasi, M. Klis, P.B. Mikesell, R.J. Trumbly, The Cyc8 (Ssn6)-Tup1 corepressor complex is composed of one Cyc8 and four Tup1 subunits, Mol. Cell. Biol. 16 (1996) 6707-6714.
-
(1996)
Mol. Cell. Biol
, vol.16
, pp. 6707-6714
-
-
Varanasi, U.S.1
Klis, M.2
Mikesell, P.B.3
Trumbly, R.J.4
-
2
-
-
0026571899
-
Ssn6-Tup1 is a general repressor of transcription in yeast
-
C.A. Keleher, M.J. Redd, J. Schultz, M. Carlson, A.D. Johnson, Ssn6-Tup1 is a general repressor of transcription in yeast, Cell 68 (1992) 709-719.
-
(1992)
Cell
, vol.68
, pp. 709-719
-
-
Keleher, C.A.1
Redd, M.J.2
Schultz, J.3
Carlson, M.4
Johnson, A.D.5
-
3
-
-
0028340797
-
Functional dissection of the yeast Cyc8-Tup1 transcriptional co-repressor complex
-
D. Tzamarias, K. Struhl, Functional dissection of the yeast Cyc8-Tup1 transcriptional co-repressor complex, Nature 369 (1994) 758-761.
-
(1994)
Nature
, vol.369
, pp. 758-761
-
-
Tzamarias, D.1
Struhl, K.2
-
4
-
-
0028969881
-
Distinct TPR motifs of Cyc8 are involved in recruiting the Cyc8-Tup1 corepressor complex to differentially regulated promoters
-
D. Tzamarias, K. Struhl, Distinct TPR motifs of Cyc8 are involved in recruiting the Cyc8-Tup1 corepressor complex to differentially regulated promoters, Genes Dev. 9 (1995) 821-831.
-
(1995)
Genes Dev
, vol.9
, pp. 821-831
-
-
Tzamarias, D.1
Struhl, K.2
-
5
-
-
84864536090
-
Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications
-
H. Matsumura, N. Kusaka, T. Nakamura, N. Tanaka, K. Sagegami, K. Uegaki, T. Inoue, Y. Mukai, Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications, J Biol Chem 287 (2012) 26528-26538.
-
(2012)
J Biol Chem
, vol.287
, pp. 26528-26538
-
-
Matsumura, H.1
Kusaka, N.2
Nakamura, T.3
Tanaka, N.4
Sagegami, K.5
Uegaki, K.6
Inoue, T.7
Mukai, Y.8
-
6
-
-
0035499392
-
Transcriptional repression: the long and the short of it
-
A.J. Courey, S. Jia, Transcriptional repression: the long and the short of it, Genes Dev. 15 (2001) 2786-2796.
-
(2001)
Genes Dev
, vol.15
, pp. 2786-2796
-
-
Courey, A.J.1
Jia, S.2
-
7
-
-
33750684669
-
Transcriptional repression by Tup1-Ssn6
-
T.M. Malave, S.Y. Dent, Transcriptional repression by Tup1-Ssn6, Biochem. Cell Biol. 84 (2006) 437-443.
-
(2006)
Biochem. Cell Biol
, vol.84
, pp. 437-443
-
-
Malave, T.M.1
Dent, S.Y.2
-
8
-
-
0034234638
-
Turning genes off by Ssn6-Tup1: a conserved system of transcriptional repression in eukaryotes
-
R.L. Smith, A.D. Johnson, Turning genes off by Ssn6-Tup1: a conserved system of transcriptional repression in eukaryotes, Trends Biochem. Sci. 25 (2000) 325-330.
-
(2000)
Trends Biochem. Sci
, vol.25
, pp. 325-330
-
-
Smith, R.L.1
Johnson, A.D.2
-
9
-
-
0035933333
-
Sfl1 functions via the co-repressor Ssn6-Tup1 and the cAMP-dependent protein kinase Tpk2
-
R.S. Conlan, D. Tzamarias, Sfl1 functions via the co-repressor Ssn6-Tup1 and the cAMP-dependent protein kinase Tpk2, J. Mol. Biol. 309 (2001) 1007-1015.
-
(2001)
J. Mol. Biol
, vol.309
, pp. 1007-1015
-
-
Conlan, R.S.1
Tzamarias, D.2
-
10
-
-
0036298418
-
Cti6, a PHD domain protein, bridges the Cyc8-Tup1 corepressor and the SAGA coactivator to overcome repression at GAL1
-
M. Papamichos-Chronakis, T. Petrakis, E. Ktistaki, I. Topalidou, D. Tzamarias, Cti6, a PHD domain protein, bridges the Cyc8-Tup1 corepressor and the SAGA coactivator to overcome repression at GAL1, Mol. Cell 9 (2002) 1297-1305.
-
(2002)
Mol. Cell
, vol.9
, pp. 1297-1305
-
-
Papamichos-Chronakis, M.1
Petrakis, T.2
Ktistaki, E.3
Topalidou, I.4
Tzamarias, D.5
-
11
-
-
0036289351
-
Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress
-
M. Proft, K. Struhl, Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress, Mol. Cell 9 (2002) 1307-1317.
-
(2002)
Mol. Cell
, vol.9
, pp. 1307-1317
-
-
Proft, M.1
Struhl, K.2
-
12
-
-
0346433724
-
Recruitment of Tup1-Ssn6 by yeast hypoxic genes and chromatin-independent exclusion of TATA binding protein
-
T.A. Mennella, L.G. Klinkenberg, R.S. Zitomer, Recruitment of Tup1-Ssn6 by yeast hypoxic genes and chromatin-independent exclusion of TATA binding protein, Eukaryot. Cell 2 (2003) 1288-1303.
-
(2003)
Eukaryot. Cell
, vol.2
, pp. 1288-1303
-
-
Mennella, T.A.1
Klinkenberg, L.G.2
Zitomer, R.S.3
-
13
-
-
1542290663
-
Nhp6 facilitates Aft1 binding and Ssn6 recruitment, both essential for FRE2 transcriptional activation
-
G.S. Fragiadakis, D. Tzamarias, D. Alexandraki, Nhp6 facilitates Aft1 binding and Ssn6 recruitment, both essential for FRE2 transcriptional activation, EMBO J. 23 (2004) 333-342.
-
(2004)
EMBO J
, vol.23
, pp. 333-342
-
-
Fragiadakis, G.S.1
Tzamarias, D.2
Alexandraki, D.3
-
14
-
-
23844531920
-
Molecular genetic analysis of the yeast repressor Rfx1/Crt1 reveals a novel two-step regulatory mechanism
-
Z. Zhang, J.C. Reese, Molecular genetic analysis of the yeast repressor Rfx1/Crt1 reveals a novel two-step regulatory mechanism, Mol. Cell. Biol. 25 (2005) 7399-7411.
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 7399-7411
-
-
Zhang, Z.1
Reese, J.C.2
-
15
-
-
35648957173
-
Heme levels switch the function of Hap1 of Saccharomyces cerevisiae between transcriptional activator and transcriptional repressor
-
M.J. Hickman, F.Winston, Heme levels switch the function of Hap1 of Saccharomyces cerevisiae between transcriptional activator and transcriptional repressor, Mol. Cell. Biol. 27 (2007) 7414-7424.
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 7414-7424
-
-
Hickman, M.J.1
Winston, F.2
-
16
-
-
0033886103
-
Genetic analysis of the role of Pol II holoenzyme components in repression by the Cyc8-Tup1 corepressor in yeast
-
M. Lee, S. Chatterjee, K. Struhl, Genetic analysis of the role of Pol II holoenzyme components in repression by the Cyc8-Tup1 corepressor in yeast, Genetics 155 (2000) 1535-1542.
-
(2000)
Genetics
, vol.155
, pp. 1535-1542
-
-
Lee, M.1
Chatterjee, S.2
Struhl, K.3
-
17
-
-
0036191396
-
Caenorhabditis elegans unc-37/groucho interacts genetically with components of the transcriptional mediator complex
-
H. Zhang, S.W. Emmons, Caenorhabditis elegans unc-37/groucho interacts genetically with components of the transcriptional mediator complex, Genetics 160 (2002) 799-803.
-
(2002)
Genetics
, vol.160
, pp. 799-803
-
-
Zhang, H.1
Emmons, S.W.2
-
18
-
-
0035813169
-
Med9/Cse2 and Gal11 modules are required for transcriptional repression of distinct group of genes
-
S.J. Han, J.S. Lee, J.S. Kang, Y.J. Kim, Med9/Cse2 and Gal11 modules are required for transcriptional repression of distinct group of genes, J. Biol. Chem. 276 (2001) 37020-37026.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 37020-37026
-
-
Han, S.J.1
Lee, J.S.2
Kang, J.S.3
Kim, Y.J.4
-
19
-
-
0034672065
-
Srb7p is a physical and physiological target of Tup1p
-
A. Gromoller, N. Lehming, Srb7p is a physical and physiological target of Tup1p, EMBO J. 19 (2000) 6845-6852.
-
(2000)
EMBO J
, vol.19
, pp. 6845-6852
-
-
Gromoller, A.1
Lehming, N.2
-
20
-
-
0033961273
-
TATA-binding protein mutants that increase transcription from enhancerless and repressed promoters in vivo
-
J.V. Geisberg, K. Struhl, TATA-binding protein mutants that increase transcription from enhancerless and repressed promoters in vivo, Mol. Cell. Biol. 20 (2000) 1478-1488.
-
(2000)
Mol. Cell. Biol
, vol.20
, pp. 1478-1488
-
-
Geisberg, J.V.1
Struhl, K.2
-
21
-
-
0034332501
-
Tup1p represses Mcm1p transcriptional activation and chromatin remodeling of an a-cell-specific gene
-
I.M. Gavin, M.P. Kladde, R.T. Simpson, Tup1p represses Mcm1p transcriptional activation and chromatin remodeling of an a-cell-specific gene, EMBO J. 19 (2000) 5875-5883.
-
(2000)
EMBO J
, vol.19
, pp. 5875-5883
-
-
Gavin, I.M.1
Kladde, M.P.2
Simpson, R.T.3
-
22
-
-
0028970369
-
Repression by SSN6-TUP1 is directed by MIG1, a repressor/activator protein
-
M.A. Treitel, M. Carlson, Repression by SSN6-TUP1 is directed by MIG1, a repressor/activator protein, Proc. Natl. Acad. Sci. U. S. A. 92 (1995) 3132-3136.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A
, vol.92
, pp. 3132-3136
-
-
Treitel, M.A.1
Carlson, M.2
-
23
-
-
82955217673
-
The Cyc8-Tup1 complex inhibits transcription primarily by masking the activation domain of the recruiting protein
-
K.H. Wong, K. Struhl, The Cyc8-Tup1 complex inhibits transcription primarily by masking the activation domain of the recruiting protein, Genes Dev 25 (2011) 2525-2539.
-
(2011)
Genes Dev
, vol.25
, pp. 2525-2539
-
-
Wong, K.H.1
Struhl, K.2
-
24
-
-
84873395730
-
Stabilization of the promoter nucleosomes in nucleosome-free regions by the yeast Cyc8-Tup1 corepressor
-
K. Chen, M.A.Wilson, C. Hirsch, A.Watson, S. Liang, Y. Lu, W. Li, S.Y. Dent, Stabilization of the promoter nucleosomes in nucleosome-free regions by the yeast Cyc8-Tup1 corepressor, Genome Res, 2013.
-
(2013)
Genome Res
-
-
Chen, K.1
Wilson, M.A.2
Hirsch, C.3
Watson, A.4
Liang, S.5
Lu, Y.6
Li, W.7
Dent, S.Y.8
-
25
-
-
0028264386
-
The global transcriptional regulators
-
J.P. Cooper, S.Y. Roth, R.T. Simpson, The global transcriptional regulators, SSN6 and TUP1, play distinct roles in the establishment of a repressive chromatin structure, Genes Dev. 8 (1994) 1400-1410.
-
(1994)
SSN6 and TUP1, play distinct roles in the establishment of a repressive chromatin structure, Genes Dev
, vol.8
, pp. 1400-1410
-
-
Cooper, J.P.1
Roth, S.Y.2
Simpson, R.T.3
-
26
-
-
34347342814
-
The Tup1 corepressor directs Htz1 deposition at a specific promoter nucleosome marking the GAL1 gene for rapid activation
-
T. Gligoris, G. Thireos, D. Tzamarias, The Tup1 corepressor directs Htz1 deposition at a specific promoter nucleosome marking the GAL1 gene for rapid activation, Mol. Cell. Biol. 27 (2007) 4198-4205.
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 4198-4205
-
-
Gligoris, T.1
Thireos, G.2
Tzamarias, D.3
-
27
-
-
0030003051
-
Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4
-
D.G. Edmondson, M.M. Smith, S.Y. Roth, Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4, Genes Dev. 10 (1996) 1247-1259.
-
(1996)
Genes Dev
, vol.10
, pp. 1247-1259
-
-
Edmondson, D.G.1
Smith, M.M.2
Roth, S.Y.3
-
28
-
-
0035910581
-
Recruitment of the yeast Tup1p-Ssn6p repressor is associated with localized decreases in histone acetylation
-
J.R. Bone, S.Y. Roth, Recruitment of the yeast Tup1p-Ssn6p repressor is associated with localized decreases in histone acetylation, J. Biol. Chem. 276 (2001) 1808-1813.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 1808-1813
-
-
Bone, J.R.1
Roth, S.Y.2
-
29
-
-
0035105035
-
TUP1 utilizes histone H3/H2B-specific HDA1 deacetylase to repress gene activity in yeast
-
J. Wu, N. Suka, M. Carlson, M. Grunstein, TUP1 utilizes histone H3/H2B-specific HDA1 deacetylase to repress gene activity in yeast, Mol. Cell 7 (2001) 117-126.
-
(2001)
Mol. Cell
, vol.7
, pp. 117-126
-
-
Wu, J.1
Suka, N.2
Carlson, M.3
Grunstein, M.4
-
30
-
-
0036142163
-
Histone-dependent association of Tup1-Ssn6 with repressed genes in vivo
-
J.K. Davie, R.J. Trumbly, S.Y. Dent, Histone-dependent association of Tup1-Ssn6 with repressed genes in vivo, Mol. Cell. Biol. 22 (2002) 693-703.
-
(2002)
Mol. Cell. Biol
, vol.22
, pp. 693-703
-
-
Davie, J.K.1
Trumbly, R.J.2
Dent, S.Y.3
-
31
-
-
0034312312
-
Ssn6-Tup1 interacts with class I histone deacetylases required for repression
-
A.D. Watson, D.G. Edmondson, J.R. Bone, Y. Mukai, Y. Yu, W. Du, D.J. Stillman, S.Y. Roth, Ssn6-Tup1 interacts with class I histone deacetylases required for repression, Genes Dev. 14 (2000) 2737-2744.
-
(2000)
Genes Dev
, vol.14
, pp. 2737-2744
-
-
Watson, A.D.1
Edmondson, D.G.2
Bone, J.R.3
Mukai, Y.4
Yu, Y.5
Du, W.6
Stillman, D.J.7
Roth, S.Y.8
-
32
-
-
0348010365
-
Tup1-Ssn6 interacts with multiple class I histone deacetylases in vivo
-
J.K. Davie, D.G. Edmondson, C.B. Coco, S.Y. Dent, Tup1-Ssn6 interacts with multiple class I histone deacetylases in vivo, J. Biol. Chem. 278 (2003) 50158-50162.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 50158-50162
-
-
Davie, J.K.1
Edmondson, D.G.2
Coco, C.B.3
Dent, S.Y.4
-
33
-
-
0035836734
-
HDA2 and HDA3 are related proteins that interact with and are essential for the activity of the yeast histone deacetylase HDA1
-
J.Wu, A.A. Carmen, R. Kobayashi, N. Suka, M. Grunstein, HDA2 and HDA3 are related proteins that interact with and are essential for the activity of the yeast histone deacetylase HDA1, Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 4391-4396.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A
, vol.98
, pp. 4391-4396
-
-
Wu, J.1
Carmen, A.A.2
Kobayashi, R.3
Suka, N.4
Grunstein, M.5
-
34
-
-
0028916096
-
Transcriptional regulation of flocculation genes in Saccharomyces cerevisiae
-
A.W. Teunissen, J.A. van den Berg, H.Y. Steensma, Transcriptional regulation of flocculation genes in Saccharomyces cerevisiae, Yeast 11 (1995) 435-446.
-
(1995)
Yeast
, vol.11
, pp. 435-446
-
-
Teunissen, A.W.1
van den Berg, J.A.2
Steensma, H.Y.3
-
35
-
-
73349099708
-
Genetic and epigenetic mechanisms underlying cellsurface variability in protozoa and fungi
-
K.J. Verstrepen, G.R. Fink, Genetic and epigenetic mechanisms underlying cellsurface variability in protozoa and fungi, Annu. Rev. Genet. 43 (2009) 1-24.
-
(2009)
Annu. Rev. Genet
, vol.43
, pp. 1-24
-
-
Verstrepen, K.J.1
Fink, G.R.2
-
36
-
-
0028978278
-
Review: the dominant flocculation genes of Saccharomyces cerevisiae constitute a new subtelomeric gene family
-
A.W. Teunissen, H.Y. Steensma, Review: the dominant flocculation genes of Saccharomyces cerevisiae constitute a new subtelomeric gene family, Yeast 11 (1995) 1001-1013.
-
(1995)
Yeast
, vol.11
, pp. 1001-1013
-
-
Teunissen, A.W.1
Steensma, H.Y.2
-
37
-
-
33644839600
-
Flocculation, adhesion and biofilm formation in yeasts
-
K.J. Verstrepen, F.M. Klis, Flocculation, adhesion and biofilm formation in yeasts, Mol. Microbiol. 60 (2006) 5-15.
-
(2006)
Mol. Microbiol
, vol.60
, pp. 5-15
-
-
Verstrepen, K.J.1
Klis, F.M.2
-
38
-
-
0038702596
-
Yeast flocculation: what brewers should know
-
K.J. Verstrepen, G. Derdelinckx, H. Verachtert, F.R. Delvaux, Yeast flocculation: what brewers should know, Appl. Microbiol. Biotechnol. 61 (2003) 197-205.
-
(2003)
Appl. Microbiol. Biotechnol
, vol.61
, pp. 197-205
-
-
Verstrepen, K.J.1
Derdelinckx, G.2
Verachtert, H.3
Delvaux, F.R.4
-
39
-
-
55649083541
-
FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast
-
S. Smukalla, M. Caldara, N. Pochet, A. Beauvais, S. Guadagnini, C. Yan, M.D. Vinces, A. Jansen, M.C. Prevost, J.P. Latge, G.R. Fink, K.R. Foster, K.J. Verstrepen, FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast, Cell 135 (2008) 726-737.
-
(2008)
Cell
, vol.135
, pp. 726-737
-
-
Smukalla, S.1
Caldara, M.2
Pochet, N.3
Beauvais, A.4
Guadagnini, S.5
Yan, C.6
Vinces, M.D.7
Jansen, A.8
Prevost, M.C.9
Latge, J.P.10
Fink, G.R.11
Foster, K.R.12
Verstrepen, K.J.13
-
40
-
-
0029914164
-
Saccharomyces cerevisiae S288C has a mutation in FLO8, a gene required for filamentous growth
-
H. Liu, C.A. Styles, G.R. Fink, Saccharomyces cerevisiae S288C has a mutation in FLO8, a gene required for filamentous growth, Genetics 144 (1996) 967-978.
-
(1996)
Genetics
, vol.144
, pp. 967-978
-
-
Liu, H.1
Styles, C.A.2
Fink, G.R.3
-
41
-
-
0035903574
-
Antagonistic remodelling by Swi-Snf and Tup1-Ssn6 of an extensive chromatin region forms the background for FLO1 gene regulation
-
A.B. Fleming, S. Pennings, Antagonistic remodelling by Swi-Snf and Tup1-Ssn6 of an extensive chromatin region forms the background for FLO1 gene regulation, EMBO J. 20 (2001) 5219-5231.
-
(2001)
EMBO J
, vol.20
, pp. 5219-5231
-
-
Fleming, A.B.1
Pennings, S.2
-
42
-
-
0032579440
-
Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications
-
C.B. Brachmann, A. Davies, G.J. Cost, E. Caputo, J. Li, P. Hieter, J.D. Boeke, Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications, Yeast 14 (1998) 115-132.
-
(1998)
Yeast
, vol.14
, pp. 115-132
-
-
Brachmann, C.B.1
Davies, A.2
Cost, G.J.3
Caputo, E.4
Li, J.5
Hieter, P.6
Boeke, J.D.7
-
43
-
-
0029871347
-
PCR-synthesis ofmarker cassetteswith long flanking homology regions for gene disruptions in S. cerevisiae
-
A.Wach, PCR-synthesis ofmarker cassetteswith long flanking homology regions for gene disruptions in S. cerevisiae, Yeast 12 (1996) 259-265.
-
(1996)
Yeast
, vol.12
, pp. 259-265
-
-
Wach, A.1
-
44
-
-
4444271170
-
A versatile toolbox for PCRbased tagging of yeast genes: newfluorescent proteins, moremarkers and promoter substitution cassettes
-
C. Janke, M.M. Magiera, N. Rathfelder, C. Taxis, S. Reber, H. Maekawa, A. Moreno-Borchart, G. Doenges, E. Schwob, E. Schiebel, M. Knop, A versatile toolbox for PCRbased tagging of yeast genes: newfluorescent proteins, moremarkers and promoter substitution cassettes, Yeast 21 (2004) 947-962.
-
(2004)
Yeast
, vol.21
, pp. 947-962
-
-
Janke, C.1
Magiera, M.M.2
Rathfelder, N.3
Taxis, C.4
Reber, S.5
Maekawa, H.6
Moreno-Borchart, A.7
Doenges, G.8
Schwob, E.9
Schiebel, E.10
Knop, M.11
-
45
-
-
46149091721
-
H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation
-
A.B. Fleming, C.F. Kao, C. Hillyer, M. Pikaart, M.A. Osley, H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation, Mol. Cell 31 (2008) 57-66.
-
(2008)
Mol. Cell
, vol.31
, pp. 57-66
-
-
Fleming, A.B.1
Kao, C.F.2
Hillyer, C.3
Pikaart, M.4
Osley, M.A.5
-
46
-
-
34047198759
-
In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation
-
694, 696, 698
-
P.Y. Zeng, C.R. Vakoc, Z.C. Chen, G.A. Blobel, S.L. Berger, In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation, Biotechniques 41 (2006) (694, 696, 698).
-
(2006)
Biotechniques
, vol.41
-
-
Zeng, P.Y.1
Vakoc, C.R.2
Chen, Z.C.3
Blobel, G.A.4
Berger, S.L.5
-
47
-
-
0033064318
-
Mapping chromatin structure in yeast
-
P.D. Gregory, W. Horz, Mapping chromatin structure in yeast, Methods Enzymol. 304 (1999) 365-376.
-
(1999)
Methods Enzymol
, vol.304
, pp. 365-376
-
-
Gregory, P.D.1
Horz, W.2
-
48
-
-
0033287309
-
Restriction nucleases as probes for chromatin structure
-
P.D. Gregory, S. Barbaric, W. Horz, Restriction nucleases as probes for chromatin structure, Methods Mol. Biol. 119 (1999) 417-425.
-
(1999)
Methods Mol. Biol
, vol.119
, pp. 417-425
-
-
Gregory, P.D.1
Barbaric, S.2
Horz, W.3
-
49
-
-
84870912857
-
A role for H2B ubiquitylation in DNA replication
-
K.M. Trujillo, M.A. Osley, A role for H2B ubiquitylation in DNA replication, Mol Cell 48 (2012) 734-746.
-
(2012)
Mol Cell
, vol.48
, pp. 734-746
-
-
Trujillo, K.M.1
Osley, M.A.2
-
50
-
-
34548771746
-
Tup1-Ssn6 and Swi-Snf remodelling activities influence long-range chromatin organization upstream of the yeast SUC2 gene
-
A.B. Fleming, S. Pennings, Tup1-Ssn6 and Swi-Snf remodelling activities influence long-range chromatin organization upstream of the yeast SUC2 gene, Nucleic Acids Res. 35 (2007) 5520-5531.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5520-5531
-
-
Fleming, A.B.1
Pennings, S.2
-
51
-
-
59549104788
-
Flocculation in Saccharomyces cerevisiae is repressed by the COMPASS methylation complex during high-gravity fermentation
-
J. Dietvorst, A. Brandt, Flocculation in Saccharomyces cerevisiae is repressed by the COMPASS methylation complex during high-gravity fermentation, Yeast 25 (2008) 891-901.
-
(2008)
Yeast
, vol.25
, pp. 891-901
-
-
Dietvorst, J.1
Brandt, A.2
-
52
-
-
79951493843
-
A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces
-
B.J. Venters, S.Wachi, T.N. Mavrich, B.E. Andersen, P. Jena, A.J. Sinnamon, P. Jain, N.S. Rolleri, C. Jiang, C. Hemeryck-Walsh, B.F. Pugh, A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces, Mol Cell 41 (2011) 480-492.
-
(2011)
Mol Cell
, vol.41
, pp. 480-492
-
-
Venters, B.J.1
Wachi, S.2
Mavrich, T.N.3
Andersen, B.E.4
Jena, P.5
Sinnamon, A.J.6
Jain, P.7
Rolleri, N.S.8
Jiang, C.9
Hemeryck-Walsh, C.10
Pugh, B.F.11
-
53
-
-
84878473105
-
A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription
-
H. van Bakel, K. Tsui, M. Gebbia, S. Mnaimneh, T.R. Hughes, C. Nislow, A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription, PLoS Genet 9 (2013) e1003479.
-
(2013)
PLoS Genet
, vol.9
-
-
van Bakel, H.1
Tsui, K.2
Gebbia, M.3
Mnaimneh, S.4
Hughes, T.R.5
Nislow, C.6
-
54
-
-
79955736398
-
The stress response factors Yap6, Cin5, Phd1, and Skn7 direct targeting of the conserved co-repressor Tup1-Ssn6 in S. cerevisiae
-
S.E. Hanlon, J.M. Rizzo, D.C. Tatomer, J.D. Lieb, M.J. Buck, C. Nislow, The stress response factors Yap6, Cin5, Phd1, and Skn7 direct targeting of the conserved co-repressor Tup1-Ssn6 in S. cerevisiae, PLoS One 6 (2011) e19060.
-
(2011)
PLoS One
, vol.6
-
-
Hanlon, S.E.1
Rizzo, J.M.2
Tatomer, D.C.3
Lieb, J.D.4
Buck, M.J.5
Nislow, C.6
-
55
-
-
80455124117
-
Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes
-
J.M. Rizzo, P.A. Mieczkowski, M.J. Buck, Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes, Nucleic Acids Res 39 (2011) 8803-8819.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 8803-8819
-
-
Rizzo, J.M.1
Mieczkowski, P.A.2
Buck, M.J.3
-
56
-
-
3042551856
-
Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae
-
Z. Zhang, J.C. Reese,-Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae, EMBO J. 23 (2004) 2246-2257.
-
(2004)
EMBO J
, vol.23
, pp. 2246-2257
-
-
Zhang, Z.1
Reese, J.C.2
-
57
-
-
4544308621
-
Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae
-
Z. Zhang, J.C. Reese, Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae, J. Biol. Chem. 279 (2004) 39240-39250.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 39240-39250
-
-
Zhang, Z.1
Reese, J.C.2
-
58
-
-
0035823553
-
Ssn6-Tup1 regulates RNR3 by positioning nucleosomes and affecting the chromatin structure at the upstream repression sequence
-
B. Li, J.C. Reese, Ssn6-Tup1 regulates RNR3 by positioning nucleosomes and affecting the chromatin structure at the upstream repression sequence, J. Biol. Chem. 276 (2001) 33788-33797.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 33788-33797
-
-
Li, B.1
Reese, J.C.2
-
59
-
-
75349098018
-
A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
-
C. Jiang, B.F. Pugh, A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome, Genome Biol. 10 (2009) R109.
-
(2009)
Genome Biol
, vol.10
-
-
Jiang, C.1
Pugh, B.F.2
-
60
-
-
75049083477
-
Histone modifying proteins Gcn5 and Hda1 affect flocculation in Saccharomyces cerevisiae during high-gravity fermentation
-
J. Dietvorst, A. Brandt, Histone modifying proteins Gcn5 and Hda1 affect flocculation in Saccharomyces cerevisiae during high-gravity fermentation, Curr Genet 56 (2010) 75-85.
-
(2010)
Curr Genet
, vol.56
, pp. 75-85
-
-
Dietvorst, J.1
Brandt, A.2
-
62
-
-
4344672753
-
Promoter-dependent roles for the Srb10 cyclin-dependent kinase and the Hda1 deacetylase in Tup1-mediated repression in Saccharomyces cerevisiae
-
S.R. Green, A.D. Johnson, Promoter-dependent roles for the Srb10 cyclin-dependent kinase and the Hda1 deacetylase in Tup1-mediated repression in Saccharomyces cerevisiae, Mol. Biol. Cell 15 (2004) 4191-4202.
-
(2004)
Mol. Biol. Cell
, vol.15
, pp. 4191-4202
-
-
Green, S.R.1
Johnson, A.D.2
-
63
-
-
0037123767
-
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases
-
D. Robyr, Y. Suka, I. Xenarios, S.K. Kurdistani, A.Wang, N. Suka, M. Grunstein, Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases, Cell 109 (2002) 437-446.
-
(2002)
Cell
, vol.109
, pp. 437-446
-
-
Robyr, D.1
Suka, Y.2
Xenarios, I.3
Kurdistani, S.K.4
Wang, A.5
Suka, N.6
Grunstein, M.7
-
64
-
-
39149130323
-
Identification of Tup1 and Cyc8 mutations defective in the responses to osmotic stress
-
Y. Kobayashi, T. Inai, M. Mizunuma, I. Okada, A. Shitamukai, D. Hirata, T. Miyakawa, Identification of Tup1 and Cyc8 mutations defective in the responses to osmotic stress, Biochem. Biophys. Res. Commun. 368 (2008) 50-55.
-
(2008)
Biochem. Biophys. Res. Commun
, vol.368
, pp. 50-55
-
-
Kobayashi, Y.1
Inai, T.2
Mizunuma, M.3
Okada, I.4
Shitamukai, A.5
Hirata, D.6
Miyakawa, T.7
-
65
-
-
0034142029
-
The organized chromatin domain of the repressed yeast a cell-specific gene STE6 contains two molecules of the corepressor Tup1p per nucleosome
-
C.E. Ducker, R.T. Simpson, The organized chromatin domain of the repressed yeast a cell-specific gene STE6 contains two molecules of the corepressor Tup1p per nucleosome, EMBO J. 19 (2000) 400-409.
-
(2000)
EMBO J
, vol.19
, pp. 400-409
-
-
Ducker, C.E.1
Simpson, R.T.2
-
66
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
C.T. Harbison, D.B. Gordon, T.I. Lee, N.J. Rinaldi, K.D. Macisaac, T.W. Danford, N.M. Hannett, J.B. Tagne, D.B. Reynolds, J. Yoo, E.G. Jennings, J. Zeitlinger, D.K. Pokholok, M. Kellis, P.A. Rolfe, K.T. Takusagawa, E.S. Lander, D.K. Gifford, E. Fraenkel, R.A. Young, Transcriptional regulatory code of a eukaryotic genome, Nature 431 (2004) 99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
Danford, T.W.6
Hannett, N.M.7
Tagne, J.B.8
Reynolds, D.B.9
Yoo, J.10
Jennings, E.G.11
Zeitlinger, J.12
Pokholok, D.K.13
Kellis, M.14
Rolfe, P.A.15
Takusagawa, K.T.16
Lander, E.S.17
Gifford, D.K.18
Fraenkel, E.19
Young, R.A.20
more..
-
67
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
T.I. Lee, N.J.Rinaldi, F. Robert, D.T. Odom, Z. Bar-Joseph, G.K.Gerber, N.M. Hannett, C.T. Harbison, C.M. Thompson, I. Simon, J. Zeitlinger, E.G. Jennings, H.L. Murray, D.B. Gordon, B. Ren, J.J. Wyrick, J.B. Tagne, T.L. Volkert, E. Fraenkel, D.K. Gifford, R.A. Young, Transcriptional regulatory networks in Saccharomyces cerevisiae, Science 298 (2002) 799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
Zeitlinger, J.11
Jennings, E.G.12
Murray, H.L.13
Gordon, D.B.14
Ren, B.15
Wyrick, J.J.16
Tagne, J.B.17
Volkert, T.L.18
Fraenkel, E.19
Gifford, D.K.20
Young, R.A.21
more..
-
68
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
Z. Xu, W.Wei, J. Gagneur, F. Perocchi, S. Clauder-Munster, J. Camblong, E. Guffanti, F. Stutz, W. Huber, L.M. Steinmetz, Bidirectional promoters generate pervasive transcription in yeast, Nature 457 (2009) 1033-1037.
-
(2009)
Nature
, vol.457
, pp. 1033-1037
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Perocchi, F.4
Clauder-Munster, S.5
Camblong, J.6
Guffanti, E.7
Stutz, F.8
Huber, W.9
Steinmetz, L.M.10
-
69
-
-
33745885957
-
The Swi2/Snf2 bromodomain is required for the displacement of SAGA and the octamer transfer of SAGA-acetylated nucleosomes
-
A.H. Hassan, S. Awad, P. Prochasson, The Swi2/Snf2 bromodomain is required for the displacement of SAGA and the octamer transfer of SAGA-acetylated nucleosomes, J. Biol. Chem. 281 (2006) 18126-18134.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 18126-18134
-
-
Hassan, A.H.1
Awad, S.2
Prochasson, P.3
-
70
-
-
0036847620
-
Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes
-
A.H. Hassan, P. Prochasson, K.E. Neely, S.C. Galasinski, M. Chandy, M.J. Carrozza, J.L. Workman, Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes, Cell 111 (2002) 369-379.
-
(2002)
Cell
, vol.111
, pp. 369-379
-
-
Hassan, A.H.1
Prochasson, P.2
Neely, K.E.3
Galasinski, S.C.4
Chandy, M.5
Carrozza, M.J.6
Workman, J.L.7
-
71
-
-
0035937419
-
Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes
-
A.H. Hassan, K.E. Neely, J.L.Workman, Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes, Cell 104 (2001) 817-827.
-
(2001)
Cell
, vol.104
, pp. 817-827
-
-
Hassan, A.H.1
Neely, K.E.2
Workman, J.L.3
-
72
-
-
33750370417
-
SWI/SNF displaces SAGAacetylated nucleosomes
-
M. Chandy, J.L. Gutierrez, P. Prochasson, J.L. Workman, SWI/SNF displaces SAGAacetylated nucleosomes, Eukaryot. Cell 5 (2006) 1738-1747.
-
(2006)
Eukaryot. Cell
, vol.5
, pp. 1738-1747
-
-
Chandy, M.1
Gutierrez, J.L.2
Prochasson, P.3
Workman, J.L.4
|