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Volumn 63, Issue 6, 2014, Pages 933-950

Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (Poaceae)

Author keywords

Branch length; Chloroplast phylogenomics; Data partitioning; Low sequence divergence; Sampling; Temperate woody bamboos

Indexed keywords

BAMBUSA; BAMBUSOIDEAE; PHYLLOSTACHYS ACUTA; POACEAE;

EID: 84921882944     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syu054     Document Type: Article
Times cited : (204)

References (90)
  • 1
    • 70350218974 scopus 로고    scopus 로고
    • An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
    • APG III
    • APG III. 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot. J. Linn. Soc. 161:105-121.
    • (2009) Bot. J. Linn. Soc. , vol.161 , pp. 105-121
  • 2
    • 84873541206 scopus 로고    scopus 로고
    • An updated tribal and subtribal classification for the Bambusoideae (Poaceae)
    • Gielis J., Potters G., editors Belgium: World Bamboo Organization
    • th World Bamboo Congress, Antwerp, Belgium: World Bamboo Organization. p. 3-27.
    • (2012) th World Bamboo Congress, Antwerp , pp. 3-27
  • 4
    • 20444491634 scopus 로고    scopus 로고
    • A review of long-branch attraction
    • Bergsten J. 2005. A review of long-branch attraction. Cladistics 21:163-193.
    • (2005) Cladistics , vol.21 , pp. 163-193
    • Bergsten, J.1
  • 6
    • 0020541784 scopus 로고
    • An approach to population and evolutionary genetic theory for genes in mitochondria and chloroplasts, and some results
    • Birky C.W. Jr., Maruyama T., Fuerst P. 1983. An approach to population and evolutionary genetic theory for genes in mitochondria and chloroplasts, and some results. Genetics 103:513-527.
    • (1983) Genetics , vol.103 , pp. 513-527
    • Birky, C.W.1    Maruyama, T.2    Fuerst, P.3
  • 8
    • 77952787167 scopus 로고    scopus 로고
    • Biogeography of the grasses (Poaceae): A phylogenetic approach to reveal evolutionary history in geographical space and ecological time
    • Bouchenak-Khelladi Y., Verboom G.A., Savolainen V., Hodkinson T.R. 2010. Biogeography of the grasses (Poaceae): a phylogenetic approach to reveal evolutionary history in geographical space and ecological time. Bot. J. Linn. Soc. 162:543-557.
    • (2010) Bot. J. Linn. Soc. , vol.162 , pp. 543-557
    • Bouchenak-Khelladi, Y.1    Verboom, G.A.2    Savolainen, V.3    Hodkinson, T.R.4
  • 9
    • 9944255059 scopus 로고    scopus 로고
    • Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards
    • Brandley M.C., Schmitz A., Reeder T.W. 2005. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Syst. Biol. 54:373-390.
    • (2005) Syst. Biol. , vol.54 , pp. 373-390
    • Brandley, M.C.1    Schmitz, A.2    Reeder, T.W.3
  • 10
    • 37249003697 scopus 로고    scopus 로고
    • The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics
    • Brown J.M., Lemmon A.R. 2007. The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics. Syst. Biol. 56:643-655.
    • (2007) Syst. Biol. , vol.56 , pp. 643-655
    • Brown, J.M.1    Lemmon, A.R.2
  • 11
    • 84875125807 scopus 로고    scopus 로고
    • Plastome sequences of two new world bamboos-Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)-extended phylogenomic understanding of Bambusoideae
    • Burke S.V., Grennan C.P., Duvall M.R. 2012. Plastome sequences of two new world bamboos-Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)-extended phylogenomic understanding of Bambusoideae. Am. J. Bot. 99:1951-1961.
    • (2012) Am. J. Bot. , vol.99 , pp. 1951-1961
    • Burke, S.V.1    Grennan, C.P.2    Duvall, M.R.3
  • 17
    • 17744394753 scopus 로고    scopus 로고
    • Phylogenomics and the reconstruction of the tree of life
    • Delsuc F., Brinkmann H., Philippe H. 2005. Phylogenomics and the reconstruction of the tree of life. Nat. Rev. Genet. 6:361-375.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 361-375
    • Delsuc, F.1    Brinkmann, H.2    Philippe, H.3
  • 18
    • 85006630248 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle J.J., Doyle J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19:11-15.
    • (1987) Phytochem. Bull. , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 19
    • 84860139764 scopus 로고    scopus 로고
    • Multiple continental radiations and correlates of diversification in Lupinus (Leguminosae): Testing for key innovation with incomplete taxon sampling
    • Drummond C.S., Eastwood R.J., Miotto S.T.S., Hughes C.E. 2012. Multiple continental radiations and correlates of diversification in Lupinus (Leguminosae): testing for key innovation with incomplete taxon sampling. Syst. Biol. 61:443-460.
    • (2012) Syst. Biol. , vol.61 , pp. 443-460
    • Drummond, C.S.1    Eastwood, R.J.2    Miotto, S.T.S.3    Hughes, C.E.4
  • 20
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 21
    • 19044400807 scopus 로고    scopus 로고
    • Molecular phylogeny of the Carnivora (Mammalia): Assessing the impact of increased sampling on resolving enigmatic relationships
    • Flynn J.J., Finarelli J.A., Zehr S., Hsu J., Nedbal M.A. 2005. Molecular phylogeny of the Carnivora (Mammalia): assessing the impact of increased sampling on resolving enigmatic relationships. Syst. Biol. 54:317-337.
    • (2005) Syst. Biol. , vol.54 , pp. 317-337
    • Flynn, J.J.1    Finarelli, J.A.2    Zehr, S.3    Hsu, J.4    Nedbal, M.A.5
  • 22
    • 33746252513 scopus 로고    scopus 로고
    • Chinese moso bamboo: Its importance
    • Fu J.H. 2001. Chinese moso bamboo: its importance. Bamboo 22:5-7.
    • (2001) Bamboo , vol.22 , pp. 5-7
    • Fu, J.H.1
  • 23
    • 0035619568 scopus 로고    scopus 로고
    • Genetic variation and evolution of the alpine bamboos (Poaceae: Bambusoideae) using DNA sequence data
    • Guo Z.H., Chen Y.Y., Li D.Z., Yang J.B. 2001. Genetic variation and evolution of the alpine bamboos (Poaceae: Bambusoideae) using DNA sequence data. J. Plant Res. 114:315-322.
    • (2001) J. Plant Res. , vol.114 , pp. 315-322
    • Guo, Z.H.1    Chen, Y.Y.2    Li, D.Z.3    Yang, J.B.4
  • 24
    • 0347093519 scopus 로고    scopus 로고
    • Phylogenetics of the Thamnocalamus group and its allies (Gramineae: Bambusoideae): Inference from the sequence of GBSSI gene and ITS spacer
    • Guo Z.H., Li D.Z. 2004. Phylogenetics of the Thamnocalamus group and its allies (Gramineae: Bambusoideae): inference from the sequence of GBSSI gene and ITS spacer. Mol. Phylogenet. Evol. 30:1-12.
    • (2004) Mol. Phylogenet. Evol. , vol.30 , pp. 1-12
    • Guo, Z.H.1    Li, D.Z.2
  • 26
    • 33747339757 scopus 로고    scopus 로고
    • Resolution of phylogenetic conflict in large data sets by increased taxon sampling
    • Hedtke S.M., Townsend T.M., Hillis D.M. 2006. Resolution of phylogenetic conflict in large data sets by increased taxon sampling. Syst. Biol. 55:522-529.
    • (2006) Syst. Biol. , vol.55 , pp. 522-529
    • Hedtke, S.M.1    Townsend, T.M.2    Hillis, D.M.3
  • 27
    • 78649570620 scopus 로고    scopus 로고
    • Phylogenetic analyses of plastid and nuclear DNA sequences indicate a rapid late Miocene radiation of the temperate bamboo tribe Arundinarieae (Poaceae, Bambusoideae)
    • Hodkinson T.R., Chonghaile G.N., Sungkaew S., Chase M.W., Salamin N., Stapleton C.M.A. 2010. Phylogenetic analyses of plastid and nuclear DNA sequences indicate a rapid late Miocene radiation of the temperate bamboo tribe Arundinarieae (Poaceae, Bambusoideae). Plant Ecol. Divers. 3:109-120.
    • (2010) Plant Ecol. Divers. , vol.3 , pp. 109-120
    • Hodkinson, T.R.1    Chonghaile, G.N.2    Sungkaew, S.3    Chase, M.W.4    Salamin, N.5    Stapleton, C.M.A.6
  • 28
    • 0032148641 scopus 로고    scopus 로고
    • Systematic bias in phylogenetic analysis: Is the Strepsiptera problem solved?
    • Huelsenbeck J.P. 1998. Systematic bias in phylogenetic analysis: is the Strepsiptera problem solved? Syst. Biol. 47:519-537.
    • (1998) Syst. Biol. , vol.47 , pp. 519-537
    • Huelsenbeck, J.P.1
  • 29
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson D.H., Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 31
    • 0000282967 scopus 로고
    • Why bambooswait so long to flower
    • Janzen D.H. 1976.Why bambooswait so long to flower. Ann. Rev. Ecol. Syst. 7:347-391.
    • (1976) Ann. Rev. Ecol. Syst. , vol.7 , pp. 347-391
    • Janzen, D.H.1
  • 34
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: Improvement in accuracy of multiple sequence alignment
    • Katoh K., Kuma K., Toh H., Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33:511-518.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 35
    • 84877928769 scopus 로고    scopus 로고
    • Higher level phylogenetic relationships within the bamboos (Poaceae: Bambusoideae) based on five plastid markers
    • Kelchner S.A., Bamboo Phylogeny Group. 2013. Higher level phylogenetic relationships within the bamboos (Poaceae: Bambusoideae) based on five plastid markers. Mol. Phylogenet. Evol. 67:404-413.
    • (2013) Mol. Phylogenet. Evol. , vol.67 , pp. 404-413
    • Kelchner, S.A.1
  • 36
    • 25144453704 scopus 로고    scopus 로고
    • Untangling long branches: Identifying conflicting phylogenetic signals using spectral analysis, neighbor-net, and consensus networks
    • Kennedy M., Holland B.R., Gray R.D., Spencer H.G. 2005. Untangling long branches: identifying conflicting phylogenetic signals using spectral analysis, neighbor-net, and consensus networks. Syst. Biol. 54:620-633.
    • (2005) Syst. Biol. , vol.54 , pp. 620-633
    • Kennedy, M.1    Holland, B.R.2    Gray, R.D.3    Spencer, H.G.4
  • 37
    • 84861380450 scopus 로고    scopus 로고
    • PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses
    • Lanfear R., Calcott B., Ho S.Y.W., Guindon S. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol. Biol. Evol. 29:1695-1701.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1695-1701
    • Lanfear, R.1    Calcott, B.2    Ho, S.Y.W.3    Guindon, S.4
  • 38
    • 80755128987 scopus 로고    scopus 로고
    • Multilocus resolution of phylogeny and timescale in the extant adaptive radiation of Hawaiian honeycreepers
    • Lerner H.R.L., Meyer M., James H.F., Hofreiter M., Fleischer R.C. 2011. Multilocus resolution of phylogeny and timescale in the extant adaptive radiation of Hawaiian honeycreepers. Curr. Biol. 21:1838-1844.
    • (2011) Curr. Biol. , vol.21 , pp. 1838-1844
    • Lerner, H.R.L.1    Meyer, M.2    James, H.F.3    Hofreiter, M.4    Fleischer, R.C.5
  • 39
    • 47249090871 scopus 로고    scopus 로고
    • Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci
    • Li C., Lu G., Ortí G. 2008. Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci. Syst. Biol. 57:519-539.
    • (2008) Syst. Biol. , vol.57 , pp. 519-539
    • Li, C.1    Lu, G.2    Ortí, G.3
  • 40
    • 52249101125 scopus 로고    scopus 로고
    • Taxonomy and biogeography of the Bambuseae (Gramineae: Bambusoideae)
    • Rao A.N., Rao V.R., editors. Bamboo - Conservation, Diversity, Ecogeography, Germplasm, Resource Utilization and Taxonomy Serdang, Malaysia: IPGRI-APO
    • Li D.Z. 1999. Taxonomy and biogeography of the Bambuseae (Gramineae: Bambusoideae). In: Rao A.N., Rao V.R., editors. Bamboo - conservation, diversity, ecogeography, germplasm, resource utilization and taxonomy. Proceeding of training course cum workshop, Kunming and Xishuangbanna, Yunnan, China. Serdang, Malaysia: IPGRI-APO. p. 14-23.
    • (1999) Proceeding of Training Course Cum Workshop, Kunming and Xishuangbanna, Yunnan, China , pp. 14-23
    • Li, D.Z.1
  • 43
    • 72049096137 scopus 로고    scopus 로고
    • Cryptic failure if partitioned Bayesian phylogenetic analyses: Lost in the land of long trees
    • Marshall D.C. 2010.Cryptic failure if partitioned Bayesian phylogenetic analyses: lost in the land of long trees. Syst. Biol. 59:108-117.
    • (2010) Syst. Biol. , vol.59 , pp. 108-117
    • Marshall, D.C.1
  • 44
    • 0003752385 scopus 로고
    • Cambridge: Harvard University Press. [Reprint 1993, Washington DC: Smithsonian Institution Press.]
    • McClure F.A. 1973. The Bamboos: a fresh perspective. Cambridge: Harvard University Press. [Reprint 1993, Washington DC: Smithsonian Institution Press.]
    • (1973) The Bamboos: A Fresh Perspective.
    • McClure, F.A.1
  • 45
    • 37549054628 scopus 로고    scopus 로고
    • Using plastid genome-scale data to resolve enigmatic relationships among the basal angiosperms
    • Moore M.J., Bell C.D., Soltis P.S., Soltis D.E. 2007. Using plastid genome-scale data to resolve enigmatic relationships among the basal angiosperms. Proc. Natl Acad. Sci. U. S. A. 104:19363-19368.
    • (2007) Proc. Natl Acad. Sci. U. S. A. , vol.104 , pp. 19363-19368
    • Moore, M.J.1    Bell, C.D.2    Soltis, P.S.3    Soltis, D.E.4
  • 46
    • 77949494249 scopus 로고    scopus 로고
    • Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
    • Moore M.J., Soltis P.S., Bell C.D., Burleigh J.G., Soltis D.E. 2010. Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proc. Natl Acad. Sci. U. S. A. 107:4623-4628.
    • (2010) Proc. Natl Acad. Sci. U. S. A. , vol.107 , pp. 4623-4628
    • Moore, M.J.1    Soltis, P.S.2    Bell, C.D.3    Burleigh, J.G.4    Soltis, D.E.5
  • 49
    • 39149141072 scopus 로고    scopus 로고
    • AWTY (are we there yet?): A system for graphical exploration of MCMC convergence in Bayesian phylogenetics
    • Nylander J.A.A., Wilgenbusch J.C., Warren D.L., Swofford D.L. 2008. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24:581-583.
    • (2008) Bioinformatics , vol.24 , pp. 581-583
    • Nylander, J.A.A.1    Wilgenbusch, J.C.2    Warren, D.L.3    Swofford, D.L.4
  • 51
    • 0022294484 scopus 로고
    • Comparative organization of chloroplast genomes
    • Palmer J.D. 1985. Comparative organization of chloroplast genomes. Annu. Rev. Genet. 19:325-354.
    • (1985) Annu. Rev. Genet. , vol.19 , pp. 325-354
    • Palmer, J.D.1
  • 52
    • 72549096467 scopus 로고    scopus 로고
    • Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
    • Parks M., Cronn R., Liston A. 2009. Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes. BMC Biol. 7:84.
    • (2009) BMC Biol. , vol.7 , pp. 84
    • Parks, M.1    Cronn, R.2    Liston, A.3
  • 53
    • 52249112021 scopus 로고    scopus 로고
    • Highly heterogeneous generic delimitation within the temperate bamboo clade (Poaceae: Bambusoideae): Evidence from GBSSI and ITS sequences
    • Peng S., Yang H.Q., Li D.Z. 2008. Highly heterogeneous generic delimitation within the temperate bamboo clade (Poaceae: Bambusoideae): evidence from GBSSI and ITS sequences. Taxon 57:799-810.
    • (2008) Taxon , vol.57 , pp. 799-810
    • Peng, S.1    Yang, H.Q.2    Li, D.Z.3
  • 55
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: Advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests
    • Posada D., Buckley T.R. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 53:793-808.
    • (2004) Syst. Biol. , vol.53 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 56
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D., Crandall K.A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 58
    • 0030928378 scopus 로고    scopus 로고
    • Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • Rambaut A., Grassly N.C. 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:235-238.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 235-238
    • Rambaut, A.1    Grassly, N.C.2
  • 59
    • 33751039720 scopus 로고    scopus 로고
    • Bushes in the tree of life
    • Rokas A., Carroll S.B. 2006. Bushes in the tree of life. PLoS Biol. 4:e352.
    • (2006) PLoS Biol. , vol.4 , pp. e352
    • Rokas, A.1    Carroll, S.B.2
  • 60
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 61
    • 0035845536 scopus 로고    scopus 로고
    • Incomplete taxon sampling is not a problem for phylogenetic inference
    • Rosenberg M.S., Kumar S. 2001. Incomplete taxon sampling is not a problem for phylogenetic inference. Proc. Natl Acad. Sci. U. S. A. 98:10751-10756.
    • (2001) Proc. Natl Acad. Sci. U. S. A. , vol.98 , pp. 10751-10756
    • Rosenberg, M.S.1    Kumar, S.2
  • 62
    • 84862889898 scopus 로고    scopus 로고
    • Biogeography and divergence time estimates of woody bamboos: Insights in the evolution of neotropical bamboos
    • Ruiz-Sanchez E. 2011. Biogeography and divergence time estimates of woody bamboos: insights in the evolution of neotropical bamboos. Bol. Soc. Bot. Mex. 88:67-75.
    • (2011) Bol. Soc. Bot. Mex. , vol.88 , pp. 67-75
    • Ruiz-Sanchez, E.1
  • 64
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure J., Ji H. 2008. Next-generation DNA sequencing. Nat. Biotechnol. 26:1135-1145.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 65
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51:492-508.
    • (2002) Syst. Biol. , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 66
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • Shimodaira H., Hasewaga M. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17:1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasewaga, M.2
  • 68
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 69
    • 84904437205 scopus 로고    scopus 로고
    • Bergbambos and Oldeania, newgenera of African bamboos (Poaceae, Bambusoideae)
    • Stapleton C.M.A. 2013. Bergbambos and Oldeania, newgenera of African bamboos (Poaceae, Bambusoideae). PhytoKeys 25:87-103.
    • (2013) PhytoKeys , vol.25 , pp. 87-103
    • Stapleton, C.M.A.1
  • 70
    • 58149386206 scopus 로고    scopus 로고
    • Nonmonophyly of the woody bamboos (Bambuseae; Poaceae): A multigene region phylogenetic analysis of Bambusoideae s.s.
    • Sungkaew S., Stapleton C.M.A., Salamin N., Hodkinson T.R. 2009.Nonmonophyly of the woody bamboos (Bambuseae; Poaceae): a multigene region phylogenetic analysis of Bambusoideae s.s. J. Plant Res. 122:95-108.
    • (2009) J. Plant Res. , vol.122 , pp. 95-108
    • Sungkaew, S.1    Stapleton, C.M.A.2    Salamin, N.3    Hodkinson, T.R.4
  • 72
    • 34547781750 scopus 로고    scopus 로고
    • MEGA 4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. 2007. MEGA 4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 73
    • 77953325693 scopus 로고    scopus 로고
    • Phylogeny of the temperate bamboos (Poaceae: Bambusoideae: Bambuseae) with an emphasis on Arundinaria and allies
    • Triplett J.K., Clark L.G. 2010. Phylogeny of the temperate bamboos (Poaceae: Bambusoideae: Bambuseae) with an emphasis on Arundinaria and allies. Syst. Bot. 35:102-120.
    • (2010) Syst. Bot. , vol.35 , pp. 102-120
    • Triplett, J.K.1    Clark, L.G.2
  • 74
    • 77952710892 scopus 로고    scopus 로고
    • Unparalleled rates of species diversification in Europe
    • Valente L.M., Savolainen V., VargasP. 2010. Unparalleled rates of species diversification in Europe. Proc. R. Soc. B 277:1489-1496.
    • (2010) Proc. R. Soc. B , vol.277 , pp. 1489-1496
    • Valente, L.M.1    Savolainen, V.2    Vargas, P.3
  • 75
    • 77950850793 scopus 로고    scopus 로고
    • Phylogeny and biogeography of Dolichoderine ants: Effects of data partitioning and relict taxa on historical inference
    • Ward P.S., Brady S.G., Fisher B.L., Schultz T.R. 2010. Phylogeny and biogeography of Dolichoderine ants: effects of data partitioning and relict taxa on historical inference. Syst. Biol. 59:342-362.
    • (2010) Syst. Biol. , vol.59 , pp. 342-362
    • Ward, P.S.1    Brady, S.G.2    Fisher, B.L.3    Schultz, T.R.4
  • 76
    • 61349128420 scopus 로고    scopus 로고
    • Phylogeny, species richness, and ecological specialization in Cyperaceae tribe Cariceae
    • Waterway M., Hoshino T., Masaki T. 2009. Phylogeny, species richness, and ecological specialization in Cyperaceae tribe Cariceae. Bot. Rev. 75:138-159.
    • (2009) Bot. Rev. , vol.75 , pp. 138-159
    • Waterway, M.1    Hoshino, T.2    Masaki, T.3
  • 78
    • 28644436536 scopus 로고    scopus 로고
    • Hylid frog phylogeny and sampling strategies for speciose clades
    • Wiens J.J., Fetzner J.W., Parkinson C.L., Reeder T.W. 2005. Hylid frog phylogeny and sampling strategies for speciose clades. Syst. Biol. 54:719-748.
    • (2005) Syst. Biol. , vol.54 , pp. 719-748
    • Wiens, J.J.1    Fetzner, J.W.2    Parkinson, C.L.3    Reeder, T.W.4
  • 80
    • 69149092980 scopus 로고    scopus 로고
    • Complete nucleotide sequence of Dendrocalamus latiflorus and Bambusa oldhamii chloroplast genomes
    • Wu F.H., Kan D.P., Lee S.B., Daniell H., Lee Y.W., Lin C.C., Lin N.S., Lin C.S. 2009. Complete nucleotide sequence of Dendrocalamus latiflorus and Bambusa oldhamii chloroplast genomes. Tree Physiol. 29:847-856.
    • (2009) Tree Physiol. , vol.29 , pp. 847-856
    • Wu, F.H.1    Kan, D.P.2    Lee, S.B.3    Daniell, H.4    Lee, Y.W.5    Lin, C.C.6    Lin, N.S.7    Lin, C.S.8
  • 81
    • 83655203406 scopus 로고    scopus 로고
    • The phylogeny of the BEP clade in grasses revisited: Evidence from the whole-genome sequences of chloroplast
    • Wu Z.Q., Ge S. 2012. The phylogeny of the BEP clade in grasses revisited: evidence from the whole-genome sequences of chloroplast. Mol. Phylogenet. Evol. 62:573-578.
    • (2012) Mol. Phylogenet. Evol. , vol.62 , pp. 573-578
    • Wu, Z.Q.1    Ge, S.2
  • 82
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman S.K., Jansen R.K., Boore J.L. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252-3255.
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 84
    • 84878106037 scopus 로고    scopus 로고
    • The monophyly of Chimonocalamus and conflicting gene trees in Arundinarieae (Poaceae: Bambusoideae) inferred fromfour plastid and two nuclear markers
    • Yang H.M., Zhang Y.X., Yang J.B., Li D.Z. 2013. The monophyly of Chimonocalamus and conflicting gene trees in Arundinarieae (Poaceae: Bambusoideae) inferred fromfour plastid and two nuclear markers. Mol. Phylogenet. Evol. 68:340-356.
    • (2013) Mol. Phylogenet. Evol. , vol.68 , pp. 340-356
    • Yang, H.M.1    Zhang, Y.X.2    Yang, J.B.3    Li, D.Z.4
  • 85
    • 84905968819 scopus 로고    scopus 로고
    • Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs
    • Yang J.B., Li D.Z., Li H.T. 2014. Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs. Mol. Ecol. Resour. 14:1024-1031.
    • (2014) Mol. Ecol. Resour. , vol.14 , pp. 1024-1031
    • Yang, J.B.1    Li, D.Z.2    Li, H.T.3
  • 86
    • 77953325567 scopus 로고    scopus 로고
    • Large multi-locus plastid phylogeny of the tribe Arundinarieae (Poaceae: Bambusoideae) reveals tenmajor lineages and lowrate of molecular divergence
    • Zeng C.X., Zhang Y.X., Triplett J.K., Yang J.B., Li D.Z. 2010. Large multi-locus plastid phylogeny of the tribe Arundinarieae (Poaceae: Bambusoideae) reveals tenmajor lineages and lowrate of molecular divergence. Mol. Phylogenet. Evol. 56:821-839.
    • (2010) Mol. Phylogenet. Evol. , vol.56 , pp. 821-839
    • Zeng, C.X.1    Zhang, Y.X.2    Triplett, J.K.3    Yang, J.B.4    Li, D.Z.5
  • 87
    • 79957814250 scopus 로고    scopus 로고
    • High-throughput sequencing of six bamboo chloroplast genomes: Phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae)
    • Zhang Y.J., Ma P.F., Li D.Z. 2011. High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae). PLoS One 6:e20596.
    • (2011) PLoS One , vol.6 , pp. e20596
    • Zhang, Y.J.1    Ma, P.F.2    Li, D.Z.3
  • 88
    • 84862816178 scopus 로고    scopus 로고
    • Complex evolution in Arundinarieae (Poaceae: Bambusoideae): Incongruence between plastid and nuclear GBSSI gene phylogenies
    • Zhang Y.X., Zeng C.X., Li D.Z. 2012. Complex evolution in Arundinarieae (Poaceae: Bambusoideae): incongruence between plastid and nuclear GBSSI gene phylogenies. Mol. Phylogenet. Evol. 63:777-797.
    • (2012) Mol. Phylogenet. Evol. , vol.63 , pp. 777-797
    • Zhang, Y.X.1    Zeng, C.X.2    Li, D.Z.3
  • 89
    • 84555186853 scopus 로고    scopus 로고
    • Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the Laurasiatherian mammals
    • Zhou X., Xu S., Xu J., Chen B., Zhou K., Yang G. 2012. Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the Laurasiatherian mammals. Syst. Biol. 61:150-164.
    • (2012) Syst. Biol. , vol.61 , pp. 150-164
    • Zhou, X.1    Xu, S.2    Xu, J.3    Chen, B.4    Zhou, K.5    Yang, G.6
  • 90
    • 0036699481 scopus 로고    scopus 로고
    • Increased taxon sampling greatly reduces phylogenetic error
    • Zwickl D.J., Hillis D.M. 2002. Increased taxon sampling greatly reduces phylogenetic error. Syst. Biol. 51:588-598.
    • (2002) Syst. Biol. , vol.51 , pp. 588-598
    • Zwickl, D.J.1    Hillis, D.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.