Genetic variation and evolution of the Alpine bamboos (Poaceae: Bambusoideae) using DNA sequence data

Journal of Plant Research

Volumn 114, Issue 3, 2001, Pages 315-322

  Guo, Zhen Hua ^a   Chen, Yong Yan ^a   Li, De Zhu ^a   Yang, Jun Bo ^a  

^a KUNMING INSTITUTE OF BOTANY   (China)

Author keywords

Alpine bamboos; Evolution; Genetic variation; ITS phylogeny

Indexed keywords

EID: 0035619568     PISSN: 09189440     EISSN: None     Source Type: Journal    
DOI: 10.1007/pl00013993     Document Type: Article

References (36)

1. Baldwin, B.G., Sanderson, M.J., Porter, J.M., Wojciechowski, M.F., Campell, C.S. and Donoghue, M.J. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann. Missouri Bot. Gard. 82: 247-277.
2. Chao, C.S., Chu, C.D. and Hsiung, W.Y. 1980. A revision of some genera and species of Chinese bamboos. Acta Phytotax. Sin. 18: 20-36.
3. Chao, C.S. and Renvoize, S.A. 1989. Revision of species described under Arundinaria (Gramineae) in South-east Asia and Africa. Kew Bull. 44: 349-367.
4. Clayton W.D. and Renvoize S.A. 1986. Genera graminum. Her Majesty's Stationery Office, London. pp 41.
5. Doyle, J.J. and Doyle, J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf material. Phytochem. Bull. 19: 11-15.
6. Friar, E., Kochert, G. 1994. A study of genetic variation and evolution of Phyllostachys (Bambusoideae: Poaceae) using nuclear restriction fragment length polymorphisms. Theor. Appl. Genet. 89: 252-270.
7. Gaut, B.S., Clark, L.G., Wendel, J.F. and Muse, S.V. 1997. Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae). Molec. Biol. Evol. 14: 769-77.
8. Hodkinson, T.R., Renvoize, S.A., Chonghaile, G.N., Stapleton C.M.A. and Chase, M.W. 2000. A comparison of ITS nuclear rDNA sequence data and AFLP markers for phylogenetic studies in Phyllostachys (Bambusoideae, Poaceae). J. Plant Res. 113: 259-269.
9. Hsiao, C., Chatterton, N.J., Asay, K.H. and Jensen, K.B. 1994. Phylogenetic relationships of 10 grass species: an assessment of phylogenetic utility of the internal transcribed spacer region in nuclear ribosomal DNA in monocots. Genome 37: 112-120.
10. Hsiao, C., Chatterton, N.J., Asay, K.H. and Jensen, K.B. 1995. Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences. Genome 38: 211-230.
11. Hsiao, C., Jacobs, S.W.L., Chatterton, N.J. and Asay, K.H. 1999. A molecular phylogeny of the grass family (Poaceae) based on the sequences of nuclear ribosomal DNA (ITS). Austral. Syst. Bot. 11: 667-688
12. Hsueh, C.J. and Li, D.Z. 1987. New taxa of Bambusoideae from Sichuan and Yunnan, with discussion on concepts of related genera. J. Bamboo Res. 6: 16-19.
13. Kelcher, S.A. and Clark, L.G. 1997. Molecular evolution and phylogenetic utility of the chloroplast rp/16 intron in Chusquea and the Bambusoideae (Poaceae). Molec. Phylogenet. Evol. 8: 385-397.
14. Keng, P.C. 1992. New taxa of Bambusoideae in the flora of P.R. China. J. Bamboo Res. 11: 19-26.
15. Keng, P.C. and Wang C.P. (eds.) 1996. Flora Reipublicae Popularis Sinicae. Volume IX. Science Press, Beijing.
16. Lai, C.C. and Hsiao, J.Y. 1997. Genetic variation of Phyllostachys (Bambusoideae: Poaceae) in Taiwan based on DNA polymorphisms. Bot. Bull. Acad. Sin. 38: 145-152.
17. Li, D.Z. 1997. The flora of China Bambusoideae project-problems and current understanding of bamboo taxonomy in China. In G.P. Chapman, ed., The Bamboos. Academic Press, London, pp. 61-81.
18. Palumbi, S.R., Benzie, J. 1991. Large mitochondrial DNA differences between morphologically similar penaeid shrimp. Molec. Mar. Biol. Biotech. 1: 27-34.
19. Qiu, G.F., Chang, L.E., Xu, Q.T., Fang, X.Y. and Lou, Y.D. 2000. Intraspecific DNA sequence polymorphism in the mitochondrial 16S rRNA gene of the Chinese Shrimp, Penaeus chinensis. Zool. Res. 21: 35-40.
20. Qu, L.H. and Chen, Y.Q. 1999. Key to molecular taxonomy-principles and methods. Acta Sci. Nat. Univ. Sunyatseni. 38: 1-6.
21. Renvoize, S.A. and Hodkinson, T.R. 1997. Classification of Phyllostachys. In G.P. Chapman, ed., The Bamboos. Academic Press, London, pp. 95-105.
22. Soderstrom, T.R. 1979a. The bamboozling Thamnocalamus. Garden (N. Y.) 3: 22-27.
23. Soderstrom, T.R. 1979b. Another name for the Umbrella Bamboo. Brittonia 31: 495.
24. Soderstrom, T.R. and Ellis, R.P. 1982. Taxonomic status of the endemic South African Bamboo, Thamnocalamus tessellatus. Bothalia 14; 53-67.
25. Soltis, D.E., Doyle, J.J. and Soltis P.S. 1998. Molecular Systematics of Plants II: DNA Sequencing. Chapman & Hall, London.
26. Stapleton, C.M.A. 1994. The bamboos of the Nepal and Bhutan, Part II: Arundinaria, Thamnocalamus, Borinda and Yushania (Gramineae: Poaceae. Bambusoideae). Edinb. J. Bot. 51: 275-295.
27. Stapleton, C.M.A. 1998. New combination in Borinda (Gramineae: Bambusoideae). Kew Bull. 53: 453-459.
28. Swofford, D.L. 2000. PAUP: phylogenetic analysis using parsimony, ver. 4.0b5. Sinauer, Associates, Massachusetts, USA.
29. Wang, C.P. 1997. A proposal concerning a system of classification of Bambusoideae from China. J. Bamboo Res. 16: 1-6.
30. Wang, C.P. and Ye, G.H. 1980. On the problems of the classification of Chinese bamboos with creeping rhizomes. Acta Phytotax. Sin. 18: 283-291.
31. Wen, J. and Zimmer, E.A. 1996. Phylogeny and biogeography of Panax L. (the ginseng genus, Asteraceae): inference from ITS sequences of nuclear ribosomal DNA. Molec. Phylogenet. Evol. 6: 166-177.
32. White, T.J., Y. Bruns, S.L, and Taylor, J. 1990.. Amplification and direct sequencing of fungal RNA genes for phylogenetics. In M. Innis, D. Gelfand, J. Sninsky and T. White ed., PCR Protocols: a guide to methods and applications, Academic Press, San Diego, CA. pp. 315-322.
33. Yi, T.P. 1983. New species of Fargesia Franchet and Yushania Keng f. From Tibet. J. Bamboo Res. 2: 18-52.
34. Yi, T.P. 1985. Classification and distribution of the food bamboos of the giant panda (I). J. Bamboo Res. 4: 11-27.
35. Yi, T.P. 1988. A study on the genus Fargesia from China. J. Bamboo Res. 7: 1-119.
36. Zhang, W. 1996. Phylogeny and classification of the bamboos (Poaceae: Bambusoideae) based on molecular and morphological data. PhD dissertation, Iowa State University.