Lactobacillus formosensis sp. nov., a lactic acid bacterium isolated from fermented soybean meal

International Journal of Systematic and Evolutionary Microbiology

Volumn 65, Issue 1, 2015, Pages 101-106

  Chang, Chi Huan ^a   Chen, Yi Sheng ^b   Lee, Tzu Tai ^a   Chang, Yu Chung ^b   Yu, Bi ^a  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^b MING CHUAN UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DIAMINOPIMELIC ACID; GENOMIC DNA; GLUCOSE; LACTIC ACID; RNA 16S; FATTY ACID; PEPTIDOGLYCAN;

ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATE; DNA DNA HYBRIDIZATION; DNA SEQUENCE; ENZYME ACTIVITY; GENE SEQUENCE; HOUSEKEEPING GENE; LACTIC ACID BACTERIUM; LACTOBACILLUS; LACTOBACILLUS CRUSTORUM; LACTOBACILLUS FORMOSENSIS; LACTOBACILLUS FUTSAII; NONHUMAN; NUCLEOTIDE SEQUENCE; PHES GENE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; RPOA GENE; SOYBEAN; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; FERMENTATION; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION;

BACTERIA (MICROORGANISMS); GLYCINE MAX; LACTOBACILLUS; LACTOBACILLUS FARCIMINIS;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; FERMENTATION; GENES, BACTERIAL; LACTIC ACID; LACTOBACILLUS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PEPTIDOGLYCAN; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOYBEANS;

EID: 84921527041     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.070938-0     Document Type: Article

References (32)

1. Batal, A. B. & Parsons, C. M. (2003). Utilization of different soy products as affected by age in chicks. Poult Sci 82, 454-462.
2. Chao, S. H., Kudo, Y., Tsai, Y. C. & Watanabe, K. (2012). Lactobacillus futsaii sp. nov., isolated from fu-tsai and suan-tsai, traditional Taiwanese fermented mustard products. Int J Syst Evol Microbiol 62, 489-494.
3. Chen, Y. S., Yanagida, F. & Hsu, J. S. (2006). Isolation and characterization of lactic acid bacteria from suan-tsai (fermented mustard), a traditional fermented food in Taiwan. J Appl Microbiol 101, 125-130.
4. Chen, C. C., Shih, Y. C., Chiou, P. W. S. & Yu, B. (2010a). Evaluating nutrition quality of single stage-and two stage-fermented soybean meal. Asian Austral J Anim Sci 23, 598-606.
5. Chen, Y. S., Miyashita, M., Suzuki, K. I., Sato, H., Hsu, J. S. & Yanagida, F. (2010b). Lactobacillus pobuzihii sp. nov., isolated from pobuzihi (fermented cummingcordia). Int J Syst Evol Microbiol 60, 1914-1917.
6. Chen, C. C., Lee, T. T., Hsu, C. B., Huang, C. W. & Yu, B. (2011). Associations of allergenic soybean proteins with piglet skin allergic reaction and application of polyclonal antibodies. Anim Prod Sci 51, 1008-1014.
7. Chen, Y. S., Chang, C. H., Pan, S. F., Wang, L. T., Chang, Y. C., Wu, H. C. & Yanagida, F. (2013). Lactococcus taiwanensis sp. nov., a lactic acid bacterium isolated from fresh cummingcordia. Int J Syst Evol Microbiol 63, 2405-2409.
8. De Bruyne, K., Camu, N., De Vuyst, L. & Vandamme, P. (2009). Lactobacillus fabifermentans sp. nov. and Lactobacillus cacaonum sp. nov., isolated from Ghanaian cocoa fermentations. Int J Syst Evol Microbiol 59, 7-12.
9. Dunsford, B. R., Knabe, D. A. & Haensly, W. E. (1989). Effect of dietary soybean meal on the microscopic anatomy of the small intestine in the early-weaned pig. J Anim Sci 67, 1855-1863.
10. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
11. Farrow, J. A. E., Kruze, J., Phillips, B. A., Bramley, A. J. & Collins, M. D. (1984). Taxonomic studies on Streptococcus bovis and Streptococcus equinus: description of Streptococcus alactolyticus sp. nov. and Streptococcus saccharolyticus sp. nov. Syst Appl Microbiol 5, 467-482.
12. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
13. Feng, J., Liu, X., Xu, Z. R., Lu, Y. P. & Liu, Y. Y. (2007). Effect of fermented soybean meal on intestinal morphology and digestive enzyme activities in weaned piglets. Dig Dis Sci 52, 1845-1850.
14. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
15. Fitch, W. M. (1977). On the problem of discovering the most parsimonious tree. Am Nat 111, 223-257.
16. Goris, J., Suzuki, K., De Vos, P., Nakase, T. & Kersters, K. (1998). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44, 1148-1153.
17. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
18. Kishida, T., Ataki, H., Takebe, M. & Ebihara, K. (2000). Soybean meal fermented by Aspergillus awamori increases the cytochrome P-450 content of the liver microsomes of mice. J Agric Food Chem 48, 1367-1372.
19. Kitahara, M., Sakamoto, M. & Benno, Y. (2010). Lactobacillus similis sp. nov., isolated from fermented cane molasses. Int J Syst Evol Microbiol 60, 187-190.
20. Li, Z., Ding, S., Li, Z. & Tan, T. (2006). L-Lactic acid production by Lactobacillus casei fermentation with corn steep liquor-supplemented acid-hydrolysate of soybean meal. Biotechnol J 1, 1453-1458.
21. Naser, S. M., Thompson, F. L., Hoste, B., Gevers, D., Dawyndt, P., Vancanneyt, M. & Swings, J. (2005). Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology 151, 2141-2150.
22. Reuter, G. (1983). Lactobacillus alimentarius sp. nov., nom rev. and Lactobacillus farciminis sp. nov., nom. rev. Syst Appl Microbiol 4, 277-279.
23. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
24. Scheirlinck, I., Van der Meulen, R., Van Schoor, A., Huys, G., Vandamme, P., De Vuyst, L. & Vancanneyt, M. (2007). Lactobacillus crustorum sp. nov., isolated from two traditional Belgian wheat sourdoughs. Int J Syst Evol Microbiol 57, 1461-1467.
25. Stackebrandt, E. G. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
26. 5-PCR for identification of Enterococcus spp. FEMS Microbiol Lett 247, 59-63.
27. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
28. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
29. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
30. Tohno, M., Kitahara, M., Irisawa, T., Inoue, H., Uegaki, R., Ohkuma, M. & Tajima, K. (2013). Lactobacillus oryzae sp. nov., isolated from fermented rice grain (Oryza sativa L. subsp. japonica). Int J Syst Evol Microbiol 63, 2957-2962.
31. Versalovic, J., Schneider, M., De Bruijn, F. J. & Lupski, J. R. (1994). Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5, 25-40.
32. Wang, L. T., Lee, F. L., Tai, C. J., Yokota, A. & Kuo, H. P. (2007). Reclassification of Bacillus axarquiensis Ruiz-Garcia et al. 2005 and Bacillus malacitensis Ruiz-Garcia et al. 2005 as later heterotypic synonyms of Bacillus mojavensis Roberts et al. 1994. Int J Syst Evol Microbiol 57, 1663-1667.