Lactobacillus oryzae sp. nov., isolated from fermented rice grain (Oryza sativa L. subsp. japonica)

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART8, 2013, Pages 2957-2962

  Tohno, Masanori ^a   Kitahara, Maki ^b   Irisawa, Tomohiro ^b   Inoue, Hidehiko ^a   Uegaki, Ryuichi ^a   Ohkuma, Moriya ^b   Tajima, Kiyoshi ^a  

^a NATIONAL INSTITUTE OF LIVESTOCK AND GRASSLAND SCIENCE   (Japan)

^b RIKEN BIORESOURCE CENTER   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RNA 16S;

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; GENE SEQUENCE; LACTIC ACID BACTERIUM; LACTOBACILLUS; LACTOBACILLUS ORYZAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RICE;

BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; FATTY ACIDS; FERMENTATION; FOOD MICROBIOLOGY; JAPAN; LACTOBACILLUS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; ORYZA SATIVA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 84881004318     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.048918-0     Document Type: Article

References (26)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Cai, Y., Pang, H., Kitahara, M. & Ohkuma, M. (2012). Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus. Int J Syst Evol Microbiol 62, 1140-1144.
3. Cousin, S., Gulat-Okalla, M. L., Motreff, L., Gouyette, C., Bouchier, C., Clermont, D. & Bizet, C. (2012). Lactobacillus gigeriorum sp. nov., isolated from chicken crop. Int J Syst Evol Microbiol 62, 330-334.
4. Ennahar, S., Cai, Y. & Fujita, Y. (2003). Phylogenetic diversity of lactic acid bacteria associated with paddy rice silage as determined by 16S ribosomal DNA analysis. Appl Environ Microbiol 69, 444-451.
5. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. Hitchener, B. J., Egan, A. F. & Rogers, P. J. (1982). Characteristics of lactic acid bacteria isolated from vacuum-packaged beef. J Appl Bacteriol 52, 31-37.
7. Irisawa, T. & Okada, S. (2009). Lactobacillus sucicola sp. nov., a motile lactic acid bacterium isolated from oak tree (Quercus sp.) sap. Int J Syst Evol Microbiol 59, 2662-2665.
8. Kaksonen, A. H., Spring, S., Schumann, P., Kroppenstedt, R. M. & Puhakka, J. A. (2008). Desulfotomaculum alcoholivorax sp. nov., a moderately thermophilic, spore-forming, sulfate-reducer isolated from a fluidized-bed reactor treating acidic metal-and sulfatecontaining wastewater. Int J Syst Evol Microbiol 58, 833-838.
9. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
10. Kitahara, M., Sakamoto, M. & Benno, Y. (2010). Lactobacillus similis sp. nov., isolated from fermented cane molasses. Int J Syst Evol Microbiol 60, 187-190.
11. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. & other authors (2007). CLUSTAL W and CLUSTAL_X version 2.0. Bioinformatics 23, 2947-2948.
12. Ludwig, W., Strunk, O., Klugbauer, S., Klugbauer, N., Weizenegger, M., Neumaier, J., Bachleitner, M. & Schleifer, K. H. (1998). Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19, 554-568.
13. Naser, S. M., Thompson, F. L., Hoste, B., Gevers, D., Dawyndt, P., Vancanneyt, M. & Swings, J. (2005). Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology 151, 2141-2150.
14. Naser, S. M., Dawyndt, P., Hoste, B., Gevers, D., Vandemeulebroecke, K., Cleenwerck, I., Vancanneyt, M. & Swings, J. (2007). Identification of lactobacilli by pheS and rpoA gene sequence analyses. Int J Syst Evol Microbiol 57, 2777-2789.
15. Okada, S., Suzuki, Y. & Kozaki, M. (1979). New heterofermentative Lactobacillus species with meso-diaminopimelic acid in peptidoglycan, Lactobacillus vaccinostercus Kozaki and Okada sp. nov. J Gen Appl Microbiol 25, 215-221.
16. Oki, K., Kudo, Y. & Watanabe, K. (2012). Lactobacillus saniviri sp. nov. and Lactobacillus senioris sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 62, 601-607.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Sakamoto, M., Suzuki, M., Umeda, M., Ishikawa, I. & Benno, Y. (2002). Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov. Int J Syst Evol Microbiol 52, 841-849.
19. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: A place for DNA-DNA reassociation and 16s rRNA sequence-analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
20. Suzuki, K., Sasaki, J., Uramoto, M., Nakase, T. & Komagata, K. (1996). Agromyces mediolanus sp. nov., nom. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2,4-diaminobutyric acid in the cell wall peptidoglycan. Int J Syst Bacteriol 46, 88-93.
21. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
22. Tindall, B. J., Rosselló-Móra, R., Busse, H. J., Ludwig, W. & Kämpfer, P. (2010). Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60, 249-266.
23. Tohno, M., Kobayashi, H., Nomura, M., Kitahara, M., Ohkuma, M., Uegaki, R. & Cai, Y. (2012a). Genotypic and phenotypic characterization of lactic acid bacteria isolated from Italian ryegrass silage. Anim Sci J 83, 111-120.
24. Tohno, M., Kobayashi, H., Nomura, M., Uegaki, R. & Cai, Y. (2012b). Identification and characterization of lactic acid bacteria isolated from mixed pasture of timothy and orchardgrass, and its badly preserved silage. Anim Sci J 83, 318-330.
25. Tohno, M., Kobayashi, H., Tajima, K. & Uegaki, R. (2012c). Straindependent effects of inoculation of Lactobacillus plantarum subsp. plantarum on fermentation quality of paddy rice (Oryza sativa L. subsp. japonica) silage. FEMS Microbiol Lett 337, 112-119.
26. Tohno, M., Kitahara, M., Inoue, H., Uegaki, R., Irisawa, T., Ohkuma, M. & Tajima, K. (2013). Weissella oryzae sp. nov., isolated from fermented rice grains. Int J Syst Evol Microbiol 63, 1417-1420.